1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Liu, G.
Xiao, R.
Lee, H.-W.
Hamilton, K.
Ciccosanti, C.
Wang, H.B.
Acton, T.B.
Everett, J.K.
Huang, Y.J.
Montelione, G.T.
Northeast Structural Genomics Consortium (NESG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be Published
0353
Solution NMR Structure of Homeobox domain of Homeobox protein Nkx-3.1 from homo sapiens, Northeast Structural Genomics Consortium Target HR6470A
10.2210/pdb2l9r/pdb
pdb_00002l9r
8370.620
Homeobox protein Nkx-3.1
DNA binding Homeobox residues 132-189
1
man
polymer
Homeobox protein NK-3 homolog A
no
no
MGHHHHHHSHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLSSELG
MGHHHHHHSHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLSSELG
A
HR6470A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
NKX3-1, NKX3.1, NKX3A
9606
Homo sapiens
562
Escherichia coli
pET 14-15C
Northeast Structural Genomics Consortium
NESG
PSI:Biology
database_2
pdbx_database_status
pdbx_nmr_software
pdbx_nmr_spectrometer
struct_ref_seq_dif
repository
Initial release
Version format compliance
Structure summary
Data collection
Database references
Other
1
0
2011-04-20
1
1
2011-07-13
1
2
2012-02-22
1
3
2023-06-14
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_nmr_data
_pdbx_nmr_software.name
_pdbx_nmr_spectrometer.model
_struct_ref_seq_dif.details
Y
BMRB
Y
RCSB
2011-02-22
REL
REL
REL
REL
target function
100
20
2D 1H-15N HSQC
2D 1H-13C HSQC
3D HNCO
3D CBCA(CO)NH
3D HNCACB
3D 1H-13C arom NOESY
3D simutaneous 13C-aromatic,13C-aliphatic,15N edited 1H-1H NOESY
0.69
mM
[U-100% 13C; U-100% 15N]
0.65
mM
[U-5% 13C; U-100% 15N]
6.5
ambient
298
K
distance geometry, torsion angle dynamics, molecular dynamics
1
lowest energy
0.69 mM [U-100% 13C; U-100% 15N] HR6470A, 90% H2O/10% D2O
90% H2O/10% D2O
0.65 mM [U-5% 13C; U-100% 15N] HR6470A, 90% H2O/10% D2O
90% H2O/10% D2O
Brunger, Adams, Clore, Gros, Nilges and Read
refinement
CNS
Brunger, Adams, Clore, Gros, Nilges and Read
structure solution
CNS
Brunger, Adams, Clore, Gros, Nilges and Read
geometry optimization
CNS
Guntert, Mumenthaler and Wuthrich
refinement
CYANA
3.0
Guntert, Mumenthaler and Wuthrich
geometry optimization
CYANA
3.0
Guntert, Mumenthaler and Wuthrich
structure solution
CYANA
3.0
Huang, Tejero, Powers and Montelione
data analysis
AutoStructure
2.1
Huang, Tejero, Powers and Montelione
refinement
AutoStructure
2.1
Zimmerman, Moseley, Kulikowski and Montelione
data analysis
AutoAssign
2.1
Zimmerman, Moseley, Kulikowski and Montelione
chemical shift assignment
AutoAssign
2.1
Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
processing
NMRPipe
Bartels et al.
data analysis
XEASY
Bartels et al.
peak picking
XEASY
Bartels et al.
chemical shift assignment
XEASY
Bruker Biospin
collection
TopSpin
Varian
collection
VnmrJ
Shen, Cornilescu, Delaglio and Bax
geometry optimization
TALOS+
800
Bruker
AVANCE
Bruker Avance
600
Varian
INOVA
Varian INOVA
MET
1
n
1
MET
1
A
GLY
2
n
2
GLY
2
A
HIS
3
n
3
HIS
3
A
HIS
4
n
4
HIS
4
A
HIS
5
n
5
HIS
5
A
HIS
6
n
6
HIS
6
A
HIS
7
n
7
HIS
7
A
HIS
8
n
8
HIS
8
A
SER
9
n
9
SER
9
A
HIS
10
n
10
HIS
10
A
MET
11
n
11
MET
11
A
SER
12
n
12
SER
12
A
HIS
13
n
13
HIS
13
A
THR
14
n
14
THR
14
A
GLN
15
n
15
GLN
15
A
VAL
16
n
16
VAL
16
A
ILE
17
n
17
ILE
17
A
GLU
18
n
18
GLU
18
A
LEU
19
n
19
LEU
19
A
GLU
20
n
20
GLU
20
A
ARG
21
n
21
ARG
21
A
LYS
22
n
22
LYS
22
A
PHE
23
n
23
PHE
23
A
SER
24
n
24
SER
24
A
HIS
25
n
25
HIS
25
A
GLN
26
n
26
GLN
26
A
LYS
27
n
27
LYS
27
A
TYR
28
n
28
TYR
28
A
LEU
29
n
29
LEU
29
A
SER
30
n
30
SER
30
A
ALA
31
n
31
ALA
31
A
PRO
32
n
32
PRO
32
A
GLU
33
n
33
GLU
33
A
ARG
34
n
34
ARG
34
A
ALA
35
n
35
ALA
35
A
HIS
36
n
36
HIS
36
A
LEU
37
n
37
LEU
37
A
ALA
38
n
38
ALA
38
A
LYS
39
n
39
LYS
39
A
ASN
40
n
40
ASN
40
A
LEU
41
n
41
LEU
41
A
LYS
42
n
42
LYS
42
A
LEU
43
n
43
LEU
43
A
THR
44
n
44
THR
44
A
GLU
45
n
45
GLU
45
A
THR
46
n
46
THR
46
A
GLN
47
n
47
GLN
47
A
VAL
48
n
48
VAL
48
A
LYS
49
n
49
LYS
49
A
ILE
50
n
50
ILE
50
A
TRP
51
n
51
TRP
51
A
PHE
52
n
52
PHE
52
A
GLN
53
n
53
GLN
53
A
ASN
54
n
54
ASN
54
A
ARG
55
n
55
ARG
55
A
ARG
56
n
56
ARG
56
A
TYR
57
n
57
TYR
57
A
LYS
58
n
58
LYS
58
A
THR
59
n
59
THR
59
A
LYS
60
n
60
LYS
60
A
ARG
61
n
61
ARG
61
A
LYS
62
n
62
LYS
62
A
GLN
63
n
63
GLN
63
A
LEU
64
n
64
LEU
64
A
SER
65
n
65
SER
65
A
SER
66
n
66
SER
66
A
GLU
67
n
67
GLU
67
A
LEU
68
n
68
LEU
68
A
GLY
69
n
69
GLY
69
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
LYS
60
-62.73
96.98
1
A
GLN
63
-126.47
-155.18
2
A
HIS
10
-68.48
98.49
2
A
LYS
62
-170.79
137.16
2
A
GLN
63
39.39
-77.08
2
A
LEU
64
-160.19
-42.03
2
A
SER
66
-176.90
-56.33
4
A
HIS
7
-69.54
79.47
4
A
SER
66
-84.28
41.82
4
A
LEU
68
-143.69
-52.98
5
A
ARG
61
-66.37
-160.88
6
A
HIS
10
-65.04
91.65
6
A
LYS
42
55.70
17.44
6
A
LYS
60
-57.92
109.75
6
A
LYS
62
-167.03
-42.48
7
A
LEU
64
-122.30
-54.60
7
A
GLU
67
-85.40
45.66
8
A
HIS
7
-82.17
-71.54
8
A
HIS
10
-169.41
112.44
8
A
SER
65
72.14
-68.85
9
A
HIS
8
-69.22
84.26
9
A
SER
9
-90.09
35.08
9
A
LYS
42
56.42
19.74
9
A
LYS
60
-67.31
82.12
9
A
ARG
61
-155.14
-43.88
10
A
LYS
42
59.41
16.69
10
A
THR
59
-116.83
-162.78
10
A
SER
65
68.94
152.60
11
A
HIS
6
-161.41
105.96
12
A
HIS
4
-163.41
118.09
13
A
HIS
7
-66.99
92.79
13
A
SER
65
70.61
-55.31
15
A
HIS
8
-100.58
71.98
15
A
LEU
64
-124.54
-52.20
15
A
SER
66
-129.83
-169.62
16
A
HIS
8
-69.01
92.98
17
A
HIS
3
-135.23
-71.15
17
A
HIS
4
58.85
19.21
17
A
LYS
60
-54.08
97.72
17
A
SER
66
60.48
104.75
18
A
LYS
60
-79.92
26.94
18
A
LEU
68
-170.63
134.35
19
A
HIS
8
-69.25
79.49
19
A
SER
9
-174.99
-44.71
19
A
LYS
42
59.44
14.43
20
A
HIS
3
-115.79
65.01
20
A
HIS
6
62.58
88.91
20
A
SER
9
-60.55
96.96
20
A
LYS
62
-69.55
88.61
20
A
SER
66
-58.79
101.03
20
A
LEU
68
-60.87
93.88
lowest energy, model 1
Solution NMR Structure of Homeobox domain of Homeobox protein Nkx-3.1 from homo sapiens, Northeast Structural Genomics Consortium Target HR6470A
1
N
N
A
SER
12
A
SER
12
HELX_P
A
GLN
26
A
GLN
26
1
1
15
A
SER
30
A
SER
30
HELX_P
A
LEU
41
A
LEU
41
1
2
12
A
THR
44
A
THR
44
HELX_P
A
THR
59
A
THR
59
1
3
16
TRANSCRIPTION
Structural Genomics, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG, PSI-Biology, Protein Structure Initiative, transcription factor, transcription, Methods Development
NKX31_HUMAN
UNP
1
132
Q99801
SHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLSSELG
132
189
2L9R
12
69
Q99801
A
1
12
69
1
expression tag
MET
1
2L9R
A
Q99801
UNP
1
1
expression tag
GLY
2
2L9R
A
Q99801
UNP
2
1
expression tag
HIS
3
2L9R
A
Q99801
UNP
3
1
expression tag
HIS
4
2L9R
A
Q99801
UNP
4
1
expression tag
HIS
5
2L9R
A
Q99801
UNP
5
1
expression tag
HIS
6
2L9R
A
Q99801
UNP
6
1
expression tag
HIS
7
2L9R
A
Q99801
UNP
7
1
expression tag
HIS
8
2L9R
A
Q99801
UNP
8
1
expression tag
SER
9
2L9R
A
Q99801
UNP
9
1
expression tag
HIS
10
2L9R
A
Q99801
UNP
10
1
expression tag
MET
11
2L9R
A
Q99801
UNP
11