1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Liu, G. Xiao, R. Lee, H.-W. Hamilton, K. Ciccosanti, C. Wang, H.B. Acton, T.B. Everett, J.K. Huang, Y.J. Montelione, G.T. Northeast Structural Genomics Consortium (NESG) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking To be Published 0353 Solution NMR Structure of Homeobox domain of Homeobox protein Nkx-3.1 from homo sapiens, Northeast Structural Genomics Consortium Target HR6470A 10.2210/pdb2l9r/pdb pdb_00002l9r 8370.620 Homeobox protein Nkx-3.1 DNA binding Homeobox residues 132-189 1 man polymer Homeobox protein NK-3 homolog A no no MGHHHHHHSHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLSSELG MGHHHHHHSHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLSSELG A HR6470A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample NKX3-1, NKX3.1, NKX3A 9606 Homo sapiens 562 Escherichia coli pET 14-15C Northeast Structural Genomics Consortium NESG PSI:Biology database_2 pdbx_database_status pdbx_nmr_software pdbx_nmr_spectrometer struct_ref_seq_dif repository Initial release Version format compliance Structure summary Data collection Database references Other 1 0 2011-04-20 1 1 2011-07-13 1 2 2012-02-22 1 3 2023-06-14 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.status_code_nmr_data _pdbx_nmr_software.name _pdbx_nmr_spectrometer.model _struct_ref_seq_dif.details Y BMRB Y RCSB 2011-02-22 REL REL REL REL target function 100 20 2D 1H-15N HSQC 2D 1H-13C HSQC 3D HNCO 3D CBCA(CO)NH 3D HNCACB 3D 1H-13C arom NOESY 3D simutaneous 13C-aromatic,13C-aliphatic,15N edited 1H-1H NOESY 0.69 mM [U-100% 13C; U-100% 15N] 0.65 mM [U-5% 13C; U-100% 15N] 6.5 ambient 298 K distance geometry, torsion angle dynamics, molecular dynamics 1 lowest energy 0.69 mM [U-100% 13C; U-100% 15N] HR6470A, 90% H2O/10% D2O 90% H2O/10% D2O 0.65 mM [U-5% 13C; U-100% 15N] HR6470A, 90% H2O/10% D2O 90% H2O/10% D2O Brunger, Adams, Clore, Gros, Nilges and Read refinement CNS Brunger, Adams, Clore, Gros, Nilges and Read structure solution CNS Brunger, Adams, Clore, Gros, Nilges and Read geometry optimization CNS Guntert, Mumenthaler and Wuthrich refinement CYANA 3.0 Guntert, Mumenthaler and Wuthrich geometry optimization CYANA 3.0 Guntert, Mumenthaler and Wuthrich structure solution CYANA 3.0 Huang, Tejero, Powers and Montelione data analysis AutoStructure 2.1 Huang, Tejero, Powers and Montelione refinement AutoStructure 2.1 Zimmerman, Moseley, Kulikowski and Montelione data analysis AutoAssign 2.1 Zimmerman, Moseley, Kulikowski and Montelione chemical shift assignment AutoAssign 2.1 Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax processing NMRPipe Bartels et al. data analysis XEASY Bartels et al. peak picking XEASY Bartels et al. chemical shift assignment XEASY Bruker Biospin collection TopSpin Varian collection VnmrJ Shen, Cornilescu, Delaglio and Bax geometry optimization TALOS+ 800 Bruker AVANCE Bruker Avance 600 Varian INOVA Varian INOVA MET 1 n 1 MET 1 A GLY 2 n 2 GLY 2 A HIS 3 n 3 HIS 3 A HIS 4 n 4 HIS 4 A HIS 5 n 5 HIS 5 A HIS 6 n 6 HIS 6 A HIS 7 n 7 HIS 7 A HIS 8 n 8 HIS 8 A SER 9 n 9 SER 9 A HIS 10 n 10 HIS 10 A MET 11 n 11 MET 11 A SER 12 n 12 SER 12 A HIS 13 n 13 HIS 13 A THR 14 n 14 THR 14 A GLN 15 n 15 GLN 15 A VAL 16 n 16 VAL 16 A ILE 17 n 17 ILE 17 A GLU 18 n 18 GLU 18 A LEU 19 n 19 LEU 19 A GLU 20 n 20 GLU 20 A ARG 21 n 21 ARG 21 A LYS 22 n 22 LYS 22 A PHE 23 n 23 PHE 23 A SER 24 n 24 SER 24 A HIS 25 n 25 HIS 25 A GLN 26 n 26 GLN 26 A LYS 27 n 27 LYS 27 A TYR 28 n 28 TYR 28 A LEU 29 n 29 LEU 29 A SER 30 n 30 SER 30 A ALA 31 n 31 ALA 31 A PRO 32 n 32 PRO 32 A GLU 33 n 33 GLU 33 A ARG 34 n 34 ARG 34 A ALA 35 n 35 ALA 35 A HIS 36 n 36 HIS 36 A LEU 37 n 37 LEU 37 A ALA 38 n 38 ALA 38 A LYS 39 n 39 LYS 39 A ASN 40 n 40 ASN 40 A LEU 41 n 41 LEU 41 A LYS 42 n 42 LYS 42 A LEU 43 n 43 LEU 43 A THR 44 n 44 THR 44 A GLU 45 n 45 GLU 45 A THR 46 n 46 THR 46 A GLN 47 n 47 GLN 47 A VAL 48 n 48 VAL 48 A LYS 49 n 49 LYS 49 A ILE 50 n 50 ILE 50 A TRP 51 n 51 TRP 51 A PHE 52 n 52 PHE 52 A GLN 53 n 53 GLN 53 A ASN 54 n 54 ASN 54 A ARG 55 n 55 ARG 55 A ARG 56 n 56 ARG 56 A TYR 57 n 57 TYR 57 A LYS 58 n 58 LYS 58 A THR 59 n 59 THR 59 A LYS 60 n 60 LYS 60 A ARG 61 n 61 ARG 61 A LYS 62 n 62 LYS 62 A GLN 63 n 63 GLN 63 A LEU 64 n 64 LEU 64 A SER 65 n 65 SER 65 A SER 66 n 66 SER 66 A GLU 67 n 67 GLU 67 A LEU 68 n 68 LEU 68 A GLY 69 n 69 GLY 69 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A LYS 60 -62.73 96.98 1 A GLN 63 -126.47 -155.18 2 A HIS 10 -68.48 98.49 2 A LYS 62 -170.79 137.16 2 A GLN 63 39.39 -77.08 2 A LEU 64 -160.19 -42.03 2 A SER 66 -176.90 -56.33 4 A HIS 7 -69.54 79.47 4 A SER 66 -84.28 41.82 4 A LEU 68 -143.69 -52.98 5 A ARG 61 -66.37 -160.88 6 A HIS 10 -65.04 91.65 6 A LYS 42 55.70 17.44 6 A LYS 60 -57.92 109.75 6 A LYS 62 -167.03 -42.48 7 A LEU 64 -122.30 -54.60 7 A GLU 67 -85.40 45.66 8 A HIS 7 -82.17 -71.54 8 A HIS 10 -169.41 112.44 8 A SER 65 72.14 -68.85 9 A HIS 8 -69.22 84.26 9 A SER 9 -90.09 35.08 9 A LYS 42 56.42 19.74 9 A LYS 60 -67.31 82.12 9 A ARG 61 -155.14 -43.88 10 A LYS 42 59.41 16.69 10 A THR 59 -116.83 -162.78 10 A SER 65 68.94 152.60 11 A HIS 6 -161.41 105.96 12 A HIS 4 -163.41 118.09 13 A HIS 7 -66.99 92.79 13 A SER 65 70.61 -55.31 15 A HIS 8 -100.58 71.98 15 A LEU 64 -124.54 -52.20 15 A SER 66 -129.83 -169.62 16 A HIS 8 -69.01 92.98 17 A HIS 3 -135.23 -71.15 17 A HIS 4 58.85 19.21 17 A LYS 60 -54.08 97.72 17 A SER 66 60.48 104.75 18 A LYS 60 -79.92 26.94 18 A LEU 68 -170.63 134.35 19 A HIS 8 -69.25 79.49 19 A SER 9 -174.99 -44.71 19 A LYS 42 59.44 14.43 20 A HIS 3 -115.79 65.01 20 A HIS 6 62.58 88.91 20 A SER 9 -60.55 96.96 20 A LYS 62 -69.55 88.61 20 A SER 66 -58.79 101.03 20 A LEU 68 -60.87 93.88 lowest energy, model 1 Solution NMR Structure of Homeobox domain of Homeobox protein Nkx-3.1 from homo sapiens, Northeast Structural Genomics Consortium Target HR6470A 1 N N A SER 12 A SER 12 HELX_P A GLN 26 A GLN 26 1 1 15 A SER 30 A SER 30 HELX_P A LEU 41 A LEU 41 1 2 12 A THR 44 A THR 44 HELX_P A THR 59 A THR 59 1 3 16 TRANSCRIPTION Structural Genomics, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG, PSI-Biology, Protein Structure Initiative, transcription factor, transcription, Methods Development NKX31_HUMAN UNP 1 132 Q99801 SHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLSSELG 132 189 2L9R 12 69 Q99801 A 1 12 69 1 expression tag MET 1 2L9R A Q99801 UNP 1 1 expression tag GLY 2 2L9R A Q99801 UNP 2 1 expression tag HIS 3 2L9R A Q99801 UNP 3 1 expression tag HIS 4 2L9R A Q99801 UNP 4 1 expression tag HIS 5 2L9R A Q99801 UNP 5 1 expression tag HIS 6 2L9R A Q99801 UNP 6 1 expression tag HIS 7 2L9R A Q99801 UNP 7 1 expression tag HIS 8 2L9R A Q99801 UNP 8 1 expression tag SER 9 2L9R A Q99801 UNP 9 1 expression tag HIS 10 2L9R A Q99801 UNP 10 1 expression tag MET 11 2L9R A Q99801 UNP 11