1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Cordier, F.
Zorba, A.
Hajj, M.
Ducancel, F.
Servent, D.
Delepierre, M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
FR
Biochimie
BICMBE
0466
0300-9084
94
461
470
10.1016/j.biochi.2011.08.014
21889567
Pharmacological and structural characterization of long-sarafotoxins, a new family of endothelin-like peptides: Role of the C-terminus extension.
2012
10.2210/pdb2ldf/pdb
pdb_00002ldf
2910.219
Sarafotoxin-m
1
syn
polymer
SRTX-m
no
no
CSCNDINDKECMYFCHQDVIWDEP
CSCNDINDKECMYFCHQDVIWDEP
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
database_2
pdbx_database_status
pdbx_nmr_software
repository
Initial release
Database references
Data collection
Database references
Other
1
0
2011-09-21
1
1
2012-02-01
1
2
2023-06-14
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_nmr_data
_pdbx_nmr_software.name
BMRB
Y
RCSB
2011-05-24
REL
REL
REL
REL
172021
snakes
Atractaspis microlepidota
sample
382
197
20
56
109
8
structures with the lowest energy
200
10
0
0.333
0.024
0.002
2D 1H-1H COSY
2D 1H-1H TOCSY
2D 1H-1H NOESY
2D 1H-1H TOCSY
2D 1H-1H NOESY
2D 1H-1H TOCSY
2D 1H-1H NOESY
2D 1H-1H NOESY
1.5
mM
0
5
ambient
298
K
0
5
ambient
308
K
Of the 200 calculated conformers, the 80 conformers with the lowest total energy were refined in water. The 10 refined conformers of lowest energy represent the final ensemble.
torsion angle dynamics
1
lowest energy
1.5 mM srtx-m, 90% H2O/10% D2O
90% H2O/10% D2O
Varian
collection
VnmrJ
Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
processing
NMRPipe
Johnson, One Moon Scientific
data analysis
NMRView
Johnson, One Moon Scientific
peak picking
NMRView
Johnson, One Moon Scientific
chemical shift assignment
NMRView
Linge, O'Donoghue and Nilges
structure solution
ARIA
Linge, O'Donoghue and Nilges
refinement
ARIA
600
Varian
INOVA
Varian INOVA
500
Varian
INOVA
Varian INOVA
CYS
1
n
1
CYS
1
A
SER
2
n
2
SER
2
A
CYS
3
n
3
CYS
3
A
ASN
4
n
4
ASN
4
A
ASP
5
n
5
ASP
5
A
ILE
6
n
6
ILE
6
A
ASN
7
n
7
ASN
7
A
ASP
8
n
8
ASP
8
A
LYS
9
n
9
LYS
9
A
GLU
10
n
10
GLU
10
A
CYS
11
n
11
CYS
11
A
MET
12
n
12
MET
12
A
TYR
13
n
13
TYR
13
A
PHE
14
n
14
PHE
14
A
CYS
15
n
15
CYS
15
A
HIS
16
n
16
HIS
16
A
GLN
17
n
17
GLN
17
A
ASP
18
n
18
ASP
18
A
VAL
19
n
19
VAL
19
A
ILE
20
n
20
ILE
20
A
TRP
21
n
21
TRP
21
A
ASP
22
n
22
ASP
22
A
GLU
23
n
23
GLU
23
A
PRO
24
n
24
PRO
24
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
3
A
A
O
H
PHE
ASP
14
18
1.59
5
A
A
HB3
HA
CYS
CYS
1
15
1.26
5
A
A
O
H
PHE
ASP
14
18
1.57
9
A
A
O
H
PHE
ASP
14
18
1.56
1
A
ASN
4
-161.07
-43.63
1
A
ASP
18
65.54
70.67
1
A
ASP
22
-150.18
-51.50
2
A
ASN
4
-160.24
-30.79
2
A
ASP
18
-34.15
102.79
3
A
ASP
18
65.66
92.66
3
A
GLU
23
56.37
94.68
4
A
HIS
16
-83.62
44.89
4
A
GLN
17
-157.05
-45.02
4
A
TRP
21
-96.34
51.92
5
A
GLN
17
-129.92
-53.08
5
A
ASP
18
54.57
82.32
5
A
ILE
20
-81.33
-148.91
6
A
ASN
4
-158.96
-48.31
6
A
ILE
6
-111.79
-168.74
6
A
HIS
16
-83.72
30.64
6
A
GLN
17
-139.09
-56.99
6
A
ASP
18
60.34
80.55
6
A
ILE
20
-131.31
-153.17
6
A
TRP
21
68.79
115.05
6
A
ASP
22
70.38
90.91
7
A
ASN
4
-159.83
-53.20
7
A
ASP
18
60.20
89.37
8
A
SER
2
-93.37
34.17
8
A
ASP
8
-176.04
-141.19
8
A
HIS
16
-96.73
31.54
8
A
GLN
17
-147.36
-66.74
8
A
ASP
18
63.70
118.33
8
A
ILE
20
-92.76
-156.56
8
A
TRP
21
68.25
101.65
8
A
ASP
22
75.05
163.12
9
A
GLN
17
-147.00
-48.35
9
A
ILE
20
-86.25
-154.32
9
A
GLU
23
-178.95
97.87
10
A
ASN
4
-150.13
-36.94
10
A
ILE
6
-115.48
-167.87
10
A
ASP
18
63.66
96.60
lowest energy, model 1
Solution structure of the long sarafotoxin srtx-m
1
N
N
A
ASN
7
A
ASN
7
HELX_P
A
ASP
18
A
ASP
18
1
1
12
disulf
2.036
A
CYS
1
A
SG
CYS
1
1_555
A
CYS
15
A
SG
CYS
15
1_555
disulf
2.025
A
CYS
3
A
SG
CYS
3
1_555
A
CYS
11
A
SG
CYS
11
1_555
TOXIN
endothelin-like peptide, TOXIN
SRTDL_ATRMM
UNP
1
30
Q6RY98
CSCNDINDKECMYFCHQDVIWDEP
30
53
2LDF
1
24
Q6RY98
A
1
1
24