1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Esposito, V.
Musi, V.
De Chiara, C.
Kelly, G.
Veggi, D.
Pizza, M.
Pastore, A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
286
41767
41775
10.1074/jbc.M111.289314
21965688
Structure of the C-terminal Domain of Neisseria Heparin Binding Antigen (NHBA), One of the Main Antigens of a Novel Vaccine against Neisseria meningitidis.
2011
10.2210/pdb2lfu/pdb
pdb_00002lfu
20637.754
Gna2132
sequence database residues 246-428
1
man
polymer
Putative lipoprotein GNA2132
no
no
MASLPAEMPLIPVNQADTLIVDGEAVSLTGHSGNIFAPEGNYRYLTYGAEKLPGGSYALRVQGEPAKGEMLAGTAVYNGE
VLHFHTENGRPYPTRGRFAAKVDFGSKSVDGIIDSGDDLHMGTQKFKAAIDGNGFKGTWTENGGGDVSGRFYGPAGEEVA
GKYSYRPTDAEKGGFGVFAGKKEQDLEHHHHHH
MASLPAEMPLIPVNQADTLIVDGEAVSLTGHSGNIFAPEGNYRYLTYGAEKLPGGSYALRVQGEPAKGEMLAGTAVYNGE
VLHFHTENGRPYPTRGRFAAKVDFGSKSVDGIIDSGDDLHMGTQKFKAAIDGNGFKGTWTENGGGDVSGRFYGPAGEEVA
GKYSYRPTDAEKGGFGVFAGKKEQDLEHHHHHH
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
gna2132
487
Neisseria meningitidis
469008
Escherichia coli
BL21(DE3)-pLysS
pET21b+
database_2
pdbx_database_status
pdbx_nmr_spectrometer
struct_ref_seq_dif
repository
Initial release
Database references
Data collection
Database references
Other
1
0
2011-10-19
1
1
2011-12-28
1
2
2023-06-14
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_nmr_data
_pdbx_nmr_spectrometer.model
_struct_ref_seq_dif.details
chemical shift assignment
BMRB
Y
RCSB
2011-07-15
REL
REL
REL
REL
structures with the lowest energy
100
10
3D 1H-15N NOESY
3D 1H-15N TOCSY
2D 1H-15N HSQC
3D 1H-13C NOESY aromatic
3D 1H-13C NOESY
3D CBCA(CO)NH
3D C(CO)NH
3D HNCO
3D HNCA
3D HNCACB
3D HBHA(CO)NH
3D HN(CO)CA
3D HNHA
3D HCCH-TOCSY
0.5
mM
[U-100% 13C; U-100% 15N]
20
mM
50
mM
30
mM
0.05
7
ambient
313
K
simulated annealing
1
lowest energy
0.5 mM [U-100% 13C; U-100% 15N] Gna2132, 20 mM TRIS, 50 mM sodium chloride, 30 mM DPC, 95% H2O/5% D2O
95% H2O/5% D2O
Linge, O'Donoghue and Nilges
structure solution
ARIA
1.2
Linge, O'Donoghue and Nilges
refinement
ARIA
1.2
700
Bruker
AVANCE
Bruker Avance
n
1
243
A
n
2
244
A
n
3
245
A
n
4
246
A
n
5
247
A
n
6
248
A
n
7
249
A
n
8
250
A
n
9
251
A
n
10
252
A
n
11
253
A
n
12
254
A
n
13
255
A
n
14
256
A
n
15
257
A
n
16
258
A
n
17
259
A
n
18
260
A
n
19
261
A
n
20
262
A
n
21
263
A
n
22
264
A
n
23
265
A
n
24
266
A
n
25
267
A
n
26
268
A
n
27
269
A
n
28
270
A
n
29
271
A
n
30
272
A
n
31
273
A
n
32
274
A
n
33
275
A
ASN
34
n
34
ASN
276
A
ILE
35
n
35
ILE
277
A
PHE
36
n
36
PHE
278
A
ALA
37
n
37
ALA
279
A
PRO
38
n
38
PRO
280
A
GLU
39
n
39
GLU
281
A
GLY
40
n
40
GLY
282
A
ASN
41
n
41
ASN
283
A
TYR
42
n
42
TYR
284
A
ARG
43
n
43
ARG
285
A
TYR
44
n
44
TYR
286
A
LEU
45
n
45
LEU
287
A
THR
46
n
46
THR
288
A
TYR
47
n
47
TYR
289
A
GLY
48
n
48
GLY
290
A
ALA
49
n
49
ALA
291
A
GLU
50
n
50
GLU
292
A
LYS
51
n
51
LYS
293
A
LEU
52
n
52
LEU
294
A
PRO
53
n
53
PRO
295
A
GLY
54
n
54
GLY
296
A
GLY
55
n
55
GLY
297
A
SER
56
n
56
SER
298
A
TYR
57
n
57
TYR
299
A
ALA
58
n
58
ALA
300
A
LEU
59
n
59
LEU
301
A
ARG
60
n
60
ARG
302
A
VAL
61
n
61
VAL
303
A
GLN
62
n
62
GLN
304
A
GLY
63
n
63
GLY
305
A
GLU
64
n
64
GLU
306
A
PRO
65
n
65
PRO
307
A
ALA
66
n
66
ALA
308
A
LYS
67
n
67
LYS
309
A
GLY
68
n
68
GLY
310
A
GLU
69
n
69
GLU
311
A
MET
70
n
70
MET
312
A
LEU
71
n
71
LEU
313
A
ALA
72
n
72
ALA
314
A
GLY
73
n
73
GLY
315
A
THR
74
n
74
THR
316
A
ALA
75
n
75
ALA
317
A
VAL
76
n
76
VAL
318
A
TYR
77
n
77
TYR
319
A
ASN
78
n
78
ASN
320
A
GLY
79
n
79
GLY
321
A
GLU
80
n
80
GLU
322
A
VAL
81
n
81
VAL
323
A
LEU
82
n
82
LEU
324
A
HIS
83
n
83
HIS
325
A
PHE
84
n
84
PHE
326
A
HIS
85
n
85
HIS
327
A
THR
86
n
86
THR
328
A
GLU
87
n
87
GLU
329
A
ASN
88
n
88
ASN
330
A
GLY
89
n
89
GLY
331
A
ARG
90
n
90
ARG
332
A
PRO
91
n
91
PRO
333
A
TYR
92
n
92
TYR
334
A
PRO
93
n
93
PRO
335
A
THR
94
n
94
THR
336
A
ARG
95
n
95
ARG
337
A
GLY
96
n
96
GLY
338
A
ARG
97
n
97
ARG
339
A
PHE
98
n
98
PHE
340
A
ALA
99
n
99
ALA
341
A
ALA
100
n
100
ALA
342
A
LYS
101
n
101
LYS
343
A
VAL
102
n
102
VAL
344
A
ASP
103
n
103
ASP
345
A
PHE
104
n
104
PHE
346
A
GLY
105
n
105
GLY
347
A
SER
106
n
106
SER
348
A
LYS
107
n
107
LYS
349
A
SER
108
n
108
SER
350
A
VAL
109
n
109
VAL
351
A
ASP
110
n
110
ASP
352
A
GLY
111
n
111
GLY
353
A
ILE
112
n
112
ILE
354
A
ILE
113
n
113
ILE
355
A
ASP
114
n
114
ASP
356
A
SER
115
n
115
SER
357
A
GLY
116
n
116
GLY
358
A
ASP
117
n
117
ASP
359
A
ASP
118
n
118
ASP
360
A
LEU
119
n
119
LEU
361
A
HIS
120
n
120
HIS
362
A
MET
121
n
121
MET
363
A
GLY
122
n
122
GLY
364
A
THR
123
n
123
THR
365
A
GLN
124
n
124
GLN
366
A
LYS
125
n
125
LYS
367
A
PHE
126
n
126
PHE
368
A
LYS
127
n
127
LYS
369
A
ALA
128
n
128
ALA
370
A
ALA
129
n
129
ALA
371
A
ILE
130
n
130
ILE
372
A
ASP
131
n
131
ASP
373
A
GLY
132
n
132
GLY
374
A
ASN
133
n
133
ASN
375
A
GLY
134
n
134
GLY
376
A
PHE
135
n
135
PHE
377
A
LYS
136
n
136
LYS
378
A
GLY
137
n
137
GLY
379
A
THR
138
n
138
THR
380
A
TRP
139
n
139
TRP
381
A
THR
140
n
140
THR
382
A
GLU
141
n
141
GLU
383
A
ASN
142
n
142
ASN
384
A
GLY
143
n
143
GLY
385
A
GLY
144
n
144
GLY
386
A
GLY
145
n
145
GLY
387
A
ASP
146
n
146
ASP
388
A
VAL
147
n
147
VAL
389
A
SER
148
n
148
SER
390
A
GLY
149
n
149
GLY
391
A
ARG
150
n
150
ARG
392
A
PHE
151
n
151
PHE
393
A
TYR
152
n
152
TYR
394
A
GLY
153
n
153
GLY
395
A
PRO
154
n
154
PRO
396
A
ALA
155
n
155
ALA
397
A
GLY
156
n
156
GLY
398
A
GLU
157
n
157
GLU
399
A
GLU
158
n
158
GLU
400
A
VAL
159
n
159
VAL
401
A
ALA
160
n
160
ALA
402
A
GLY
161
n
161
GLY
403
A
LYS
162
n
162
LYS
404
A
TYR
163
n
163
TYR
405
A
SER
164
n
164
SER
406
A
TYR
165
n
165
TYR
407
A
ARG
166
n
166
ARG
408
A
PRO
167
n
167
PRO
409
A
THR
168
n
168
THR
410
A
ASP
169
n
169
ASP
411
A
ALA
170
n
170
ALA
412
A
GLU
171
n
171
GLU
413
A
LYS
172
n
172
LYS
414
A
GLY
173
n
173
GLY
415
A
GLY
174
n
174
GLY
416
A
PHE
175
n
175
PHE
417
A
GLY
176
n
176
GLY
418
A
VAL
177
n
177
VAL
419
A
PHE
178
n
178
PHE
420
A
ALA
179
n
179
ALA
421
A
GLY
180
n
180
GLY
422
A
LYS
181
n
181
LYS
423
A
LYS
182
n
182
LYS
424
A
GLU
183
n
183
GLU
425
A
GLN
184
n
184
GLN
426
A
ASP
185
n
185
ASP
427
A
LEU
186
n
186
LEU
428
A
GLU
187
n
187
GLU
429
A
HIS
188
n
188
HIS
430
A
HIS
189
n
189
HIS
431
A
HIS
190
n
190
HIS
432
A
HIS
191
n
191
HIS
433
A
HIS
192
n
192
HIS
434
A
HIS
193
n
193
HIS
435
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLY
290
A
N
GLY
48
A
O
ARG
302
A
O
ARG
60
A
N
VAL
323
A
N
VAL
81
A
O
GLY
338
A
O
GLY
96
A
N
ALA
341
A
N
ALA
99
A
O
ILE
354
A
O
ILE
112
A
N
GLY
353
A
N
GLY
111
A
O
PHE
368
A
O
PHE
126
A
N
LYS
369
A
N
LYS
127
A
O
THR
380
A
O
THR
138
A
N
GLY
379
A
N
GLY
137
A
O
VAL
389
A
O
VAL
147
A
N
ASP
388
A
N
ASP
146
A
O
SER
406
A
O
SER
164
A
N
GLY
403
A
N
GLY
161
A
O
PHE
420
A
O
PHE
178
A
O
LYS
423
A
O
LYS
181
A
N
ASN
320
A
N
ASN
78
1
A
MET
243
A
MET
1
1
Y
1
A
ALA
244
A
ALA
2
1
Y
1
A
SER
245
A
SER
3
1
Y
1
A
LEU
246
A
LEU
4
1
Y
1
A
PRO
247
A
PRO
5
1
Y
1
A
ALA
248
A
ALA
6
1
Y
1
A
GLU
249
A
GLU
7
1
Y
1
A
MET
250
A
MET
8
1
Y
1
A
PRO
251
A
PRO
9
1
Y
1
A
LEU
252
A
LEU
10
1
Y
1
A
ILE
253
A
ILE
11
1
Y
1
A
PRO
254
A
PRO
12
1
Y
1
A
VAL
255
A
VAL
13
1
Y
1
A
ASN
256
A
ASN
14
1
Y
1
A
GLN
257
A
GLN
15
1
Y
1
A
ALA
258
A
ALA
16
1
Y
1
A
ASP
259
A
ASP
17
1
Y
1
A
THR
260
A
THR
18
1
Y
1
A
LEU
261
A
LEU
19
1
Y
1
A
ILE
262
A
ILE
20
1
Y
1
A
VAL
263
A
VAL
21
1
Y
1
A
ASP
264
A
ASP
22
1
Y
1
A
GLY
265
A
GLY
23
1
Y
1
A
GLU
266
A
GLU
24
1
Y
1
A
ALA
267
A
ALA
25
1
Y
1
A
VAL
268
A
VAL
26
1
Y
1
A
SER
269
A
SER
27
1
Y
1
A
LEU
270
A
LEU
28
1
Y
1
A
THR
271
A
THR
29
1
Y
1
A
GLY
272
A
GLY
30
1
Y
1
A
HIS
273
A
HIS
31
1
Y
1
A
SER
274
A
SER
32
1
Y
1
A
GLY
275
A
GLY
33
1
Y
2
A
MET
243
A
MET
1
1
Y
2
A
ALA
244
A
ALA
2
1
Y
2
A
SER
245
A
SER
3
1
Y
2
A
LEU
246
A
LEU
4
1
Y
2
A
PRO
247
A
PRO
5
1
Y
2
A
ALA
248
A
ALA
6
1
Y
2
A
GLU
249
A
GLU
7
1
Y
2
A
MET
250
A
MET
8
1
Y
2
A
PRO
251
A
PRO
9
1
Y
2
A
LEU
252
A
LEU
10
1
Y
2
A
ILE
253
A
ILE
11
1
Y
2
A
PRO
254
A
PRO
12
1
Y
2
A
VAL
255
A
VAL
13
1
Y
2
A
ASN
256
A
ASN
14
1
Y
2
A
GLN
257
A
GLN
15
1
Y
2
A
ALA
258
A
ALA
16
1
Y
2
A
ASP
259
A
ASP
17
1
Y
2
A
THR
260
A
THR
18
1
Y
2
A
LEU
261
A
LEU
19
1
Y
2
A
ILE
262
A
ILE
20
1
Y
2
A
VAL
263
A
VAL
21
1
Y
2
A
ASP
264
A
ASP
22
1
Y
2
A
GLY
265
A
GLY
23
1
Y
2
A
GLU
266
A
GLU
24
1
Y
2
A
ALA
267
A
ALA
25
1
Y
2
A
VAL
268
A
VAL
26
1
Y
2
A
SER
269
A
SER
27
1
Y
2
A
LEU
270
A
LEU
28
1
Y
2
A
THR
271
A
THR
29
1
Y
2
A
GLY
272
A
GLY
30
1
Y
2
A
HIS
273
A
HIS
31
1
Y
2
A
SER
274
A
SER
32
1
Y
2
A
GLY
275
A
GLY
33
1
Y
3
A
MET
243
A
MET
1
1
Y
3
A
ALA
244
A
ALA
2
1
Y
3
A
SER
245
A
SER
3
1
Y
3
A
LEU
246
A
LEU
4
1
Y
3
A
PRO
247
A
PRO
5
1
Y
3
A
ALA
248
A
ALA
6
1
Y
3
A
GLU
249
A
GLU
7
1
Y
3
A
MET
250
A
MET
8
1
Y
3
A
PRO
251
A
PRO
9
1
Y
3
A
LEU
252
A
LEU
10
1
Y
3
A
ILE
253
A
ILE
11
1
Y
3
A
PRO
254
A
PRO
12
1
Y
3
A
VAL
255
A
VAL
13
1
Y
3
A
ASN
256
A
ASN
14
1
Y
3
A
GLN
257
A
GLN
15
1
Y
3
A
ALA
258
A
ALA
16
1
Y
3
A
ASP
259
A
ASP
17
1
Y
3
A
THR
260
A
THR
18
1
Y
3
A
LEU
261
A
LEU
19
1
Y
3
A
ILE
262
A
ILE
20
1
Y
3
A
VAL
263
A
VAL
21
1
Y
3
A
ASP
264
A
ASP
22
1
Y
3
A
GLY
265
A
GLY
23
1
Y
3
A
GLU
266
A
GLU
24
1
Y
3
A
ALA
267
A
ALA
25
1
Y
3
A
VAL
268
A
VAL
26
1
Y
3
A
SER
269
A
SER
27
1
Y
3
A
LEU
270
A
LEU
28
1
Y
3
A
THR
271
A
THR
29
1
Y
3
A
GLY
272
A
GLY
30
1
Y
3
A
HIS
273
A
HIS
31
1
Y
3
A
SER
274
A
SER
32
1
Y
3
A
GLY
275
A
GLY
33
1
Y
4
A
MET
243
A
MET
1
1
Y
4
A
ALA
244
A
ALA
2
1
Y
4
A
SER
245
A
SER
3
1
Y
4
A
LEU
246
A
LEU
4
1
Y
4
A
PRO
247
A
PRO
5
1
Y
4
A
ALA
248
A
ALA
6
1
Y
4
A
GLU
249
A
GLU
7
1
Y
4
A
MET
250
A
MET
8
1
Y
4
A
PRO
251
A
PRO
9
1
Y
4
A
LEU
252
A
LEU
10
1
Y
4
A
ILE
253
A
ILE
11
1
Y
4
A
PRO
254
A
PRO
12
1
Y
4
A
VAL
255
A
VAL
13
1
Y
4
A
ASN
256
A
ASN
14
1
Y
4
A
GLN
257
A
GLN
15
1
Y
4
A
ALA
258
A
ALA
16
1
Y
4
A
ASP
259
A
ASP
17
1
Y
4
A
THR
260
A
THR
18
1
Y
4
A
LEU
261
A
LEU
19
1
Y
4
A
ILE
262
A
ILE
20
1
Y
4
A
VAL
263
A
VAL
21
1
Y
4
A
ASP
264
A
ASP
22
1
Y
4
A
GLY
265
A
GLY
23
1
Y
4
A
GLU
266
A
GLU
24
1
Y
4
A
ALA
267
A
ALA
25
1
Y
4
A
VAL
268
A
VAL
26
1
Y
4
A
SER
269
A
SER
27
1
Y
4
A
LEU
270
A
LEU
28
1
Y
4
A
THR
271
A
THR
29
1
Y
4
A
GLY
272
A
GLY
30
1
Y
4
A
HIS
273
A
HIS
31
1
Y
4
A
SER
274
A
SER
32
1
Y
4
A
GLY
275
A
GLY
33
1
Y
5
A
MET
243
A
MET
1
1
Y
5
A
ALA
244
A
ALA
2
1
Y
5
A
SER
245
A
SER
3
1
Y
5
A
LEU
246
A
LEU
4
1
Y
5
A
PRO
247
A
PRO
5
1
Y
5
A
ALA
248
A
ALA
6
1
Y
5
A
GLU
249
A
GLU
7
1
Y
5
A
MET
250
A
MET
8
1
Y
5
A
PRO
251
A
PRO
9
1
Y
5
A
LEU
252
A
LEU
10
1
Y
5
A
ILE
253
A
ILE
11
1
Y
5
A
PRO
254
A
PRO
12
1
Y
5
A
VAL
255
A
VAL
13
1
Y
5
A
ASN
256
A
ASN
14
1
Y
5
A
GLN
257
A
GLN
15
1
Y
5
A
ALA
258
A
ALA
16
1
Y
5
A
ASP
259
A
ASP
17
1
Y
5
A
THR
260
A
THR
18
1
Y
5
A
LEU
261
A
LEU
19
1
Y
5
A
ILE
262
A
ILE
20
1
Y
5
A
VAL
263
A
VAL
21
1
Y
5
A
ASP
264
A
ASP
22
1
Y
5
A
GLY
265
A
GLY
23
1
Y
5
A
GLU
266
A
GLU
24
1
Y
5
A
ALA
267
A
ALA
25
1
Y
5
A
VAL
268
A
VAL
26
1
Y
5
A
SER
269
A
SER
27
1
Y
5
A
LEU
270
A
LEU
28
1
Y
5
A
THR
271
A
THR
29
1
Y
5
A
GLY
272
A
GLY
30
1
Y
5
A
HIS
273
A
HIS
31
1
Y
5
A
SER
274
A
SER
32
1
Y
5
A
GLY
275
A
GLY
33
1
Y
6
A
MET
243
A
MET
1
1
Y
6
A
ALA
244
A
ALA
2
1
Y
6
A
SER
245
A
SER
3
1
Y
6
A
LEU
246
A
LEU
4
1
Y
6
A
PRO
247
A
PRO
5
1
Y
6
A
ALA
248
A
ALA
6
1
Y
6
A
GLU
249
A
GLU
7
1
Y
6
A
MET
250
A
MET
8
1
Y
6
A
PRO
251
A
PRO
9
1
Y
6
A
LEU
252
A
LEU
10
1
Y
6
A
ILE
253
A
ILE
11
1
Y
6
A
PRO
254
A
PRO
12
1
Y
6
A
VAL
255
A
VAL
13
1
Y
6
A
ASN
256
A
ASN
14
1
Y
6
A
GLN
257
A
GLN
15
1
Y
6
A
ALA
258
A
ALA
16
1
Y
6
A
ASP
259
A
ASP
17
1
Y
6
A
THR
260
A
THR
18
1
Y
6
A
LEU
261
A
LEU
19
1
Y
6
A
ILE
262
A
ILE
20
1
Y
6
A
VAL
263
A
VAL
21
1
Y
6
A
ASP
264
A
ASP
22
1
Y
6
A
GLY
265
A
GLY
23
1
Y
6
A
GLU
266
A
GLU
24
1
Y
6
A
ALA
267
A
ALA
25
1
Y
6
A
VAL
268
A
VAL
26
1
Y
6
A
SER
269
A
SER
27
1
Y
6
A
LEU
270
A
LEU
28
1
Y
6
A
THR
271
A
THR
29
1
Y
6
A
GLY
272
A
GLY
30
1
Y
6
A
HIS
273
A
HIS
31
1
Y
6
A
SER
274
A
SER
32
1
Y
6
A
GLY
275
A
GLY
33
1
Y
7
A
MET
243
A
MET
1
1
Y
7
A
ALA
244
A
ALA
2
1
Y
7
A
SER
245
A
SER
3
1
Y
7
A
LEU
246
A
LEU
4
1
Y
7
A
PRO
247
A
PRO
5
1
Y
7
A
ALA
248
A
ALA
6
1
Y
7
A
GLU
249
A
GLU
7
1
Y
7
A
MET
250
A
MET
8
1
Y
7
A
PRO
251
A
PRO
9
1
Y
7
A
LEU
252
A
LEU
10
1
Y
7
A
ILE
253
A
ILE
11
1
Y
7
A
PRO
254
A
PRO
12
1
Y
7
A
VAL
255
A
VAL
13
1
Y
7
A
ASN
256
A
ASN
14
1
Y
7
A
GLN
257
A
GLN
15
1
Y
7
A
ALA
258
A
ALA
16
1
Y
7
A
ASP
259
A
ASP
17
1
Y
7
A
THR
260
A
THR
18
1
Y
7
A
LEU
261
A
LEU
19
1
Y
7
A
ILE
262
A
ILE
20
1
Y
7
A
VAL
263
A
VAL
21
1
Y
7
A
ASP
264
A
ASP
22
1
Y
7
A
GLY
265
A
GLY
23
1
Y
7
A
GLU
266
A
GLU
24
1
Y
7
A
ALA
267
A
ALA
25
1
Y
7
A
VAL
268
A
VAL
26
1
Y
7
A
SER
269
A
SER
27
1
Y
7
A
LEU
270
A
LEU
28
1
Y
7
A
THR
271
A
THR
29
1
Y
7
A
GLY
272
A
GLY
30
1
Y
7
A
HIS
273
A
HIS
31
1
Y
7
A
SER
274
A
SER
32
1
Y
7
A
GLY
275
A
GLY
33
1
Y
8
A
MET
243
A
MET
1
1
Y
8
A
ALA
244
A
ALA
2
1
Y
8
A
SER
245
A
SER
3
1
Y
8
A
LEU
246
A
LEU
4
1
Y
8
A
PRO
247
A
PRO
5
1
Y
8
A
ALA
248
A
ALA
6
1
Y
8
A
GLU
249
A
GLU
7
1
Y
8
A
MET
250
A
MET
8
1
Y
8
A
PRO
251
A
PRO
9
1
Y
8
A
LEU
252
A
LEU
10
1
Y
8
A
ILE
253
A
ILE
11
1
Y
8
A
PRO
254
A
PRO
12
1
Y
8
A
VAL
255
A
VAL
13
1
Y
8
A
ASN
256
A
ASN
14
1
Y
8
A
GLN
257
A
GLN
15
1
Y
8
A
ALA
258
A
ALA
16
1
Y
8
A
ASP
259
A
ASP
17
1
Y
8
A
THR
260
A
THR
18
1
Y
8
A
LEU
261
A
LEU
19
1
Y
8
A
ILE
262
A
ILE
20
1
Y
8
A
VAL
263
A
VAL
21
1
Y
8
A
ASP
264
A
ASP
22
1
Y
8
A
GLY
265
A
GLY
23
1
Y
8
A
GLU
266
A
GLU
24
1
Y
8
A
ALA
267
A
ALA
25
1
Y
8
A
VAL
268
A
VAL
26
1
Y
8
A
SER
269
A
SER
27
1
Y
8
A
LEU
270
A
LEU
28
1
Y
8
A
THR
271
A
THR
29
1
Y
8
A
GLY
272
A
GLY
30
1
Y
8
A
HIS
273
A
HIS
31
1
Y
8
A
SER
274
A
SER
32
1
Y
8
A
GLY
275
A
GLY
33
1
Y
9
A
MET
243
A
MET
1
1
Y
9
A
ALA
244
A
ALA
2
1
Y
9
A
SER
245
A
SER
3
1
Y
9
A
LEU
246
A
LEU
4
1
Y
9
A
PRO
247
A
PRO
5
1
Y
9
A
ALA
248
A
ALA
6
1
Y
9
A
GLU
249
A
GLU
7
1
Y
9
A
MET
250
A
MET
8
1
Y
9
A
PRO
251
A
PRO
9
1
Y
9
A
LEU
252
A
LEU
10
1
Y
9
A
ILE
253
A
ILE
11
1
Y
9
A
PRO
254
A
PRO
12
1
Y
9
A
VAL
255
A
VAL
13
1
Y
9
A
ASN
256
A
ASN
14
1
Y
9
A
GLN
257
A
GLN
15
1
Y
9
A
ALA
258
A
ALA
16
1
Y
9
A
ASP
259
A
ASP
17
1
Y
9
A
THR
260
A
THR
18
1
Y
9
A
LEU
261
A
LEU
19
1
Y
9
A
ILE
262
A
ILE
20
1
Y
9
A
VAL
263
A
VAL
21
1
Y
9
A
ASP
264
A
ASP
22
1
Y
9
A
GLY
265
A
GLY
23
1
Y
9
A
GLU
266
A
GLU
24
1
Y
9
A
ALA
267
A
ALA
25
1
Y
9
A
VAL
268
A
VAL
26
1
Y
9
A
SER
269
A
SER
27
1
Y
9
A
LEU
270
A
LEU
28
1
Y
9
A
THR
271
A
THR
29
1
Y
9
A
GLY
272
A
GLY
30
1
Y
9
A
HIS
273
A
HIS
31
1
Y
9
A
SER
274
A
SER
32
1
Y
9
A
GLY
275
A
GLY
33
1
Y
10
A
MET
243
A
MET
1
1
Y
10
A
ALA
244
A
ALA
2
1
Y
10
A
SER
245
A
SER
3
1
Y
10
A
LEU
246
A
LEU
4
1
Y
10
A
PRO
247
A
PRO
5
1
Y
10
A
ALA
248
A
ALA
6
1
Y
10
A
GLU
249
A
GLU
7
1
Y
10
A
MET
250
A
MET
8
1
Y
10
A
PRO
251
A
PRO
9
1
Y
10
A
LEU
252
A
LEU
10
1
Y
10
A
ILE
253
A
ILE
11
1
Y
10
A
PRO
254
A
PRO
12
1
Y
10
A
VAL
255
A
VAL
13
1
Y
10
A
ASN
256
A
ASN
14
1
Y
10
A
GLN
257
A
GLN
15
1
Y
10
A
ALA
258
A
ALA
16
1
Y
10
A
ASP
259
A
ASP
17
1
Y
10
A
THR
260
A
THR
18
1
Y
10
A
LEU
261
A
LEU
19
1
Y
10
A
ILE
262
A
ILE
20
1
Y
10
A
VAL
263
A
VAL
21
1
Y
10
A
ASP
264
A
ASP
22
1
Y
10
A
GLY
265
A
GLY
23
1
Y
10
A
GLU
266
A
GLU
24
1
Y
10
A
ALA
267
A
ALA
25
1
Y
10
A
VAL
268
A
VAL
26
1
Y
10
A
SER
269
A
SER
27
1
Y
10
A
LEU
270
A
LEU
28
1
Y
10
A
THR
271
A
THR
29
1
Y
10
A
GLY
272
A
GLY
30
1
Y
10
A
HIS
273
A
HIS
31
1
Y
10
A
SER
274
A
SER
32
1
Y
10
A
GLY
275
A
GLY
33
1
Y
2
A
A
HH
HZ
TYR
PHE
319
346
1.21
2
A
A
HB3
HA
TYR
ARG
289
302
1.24
2
A
A
OD1
HZ1
ASP
LYS
352
369
1.59
3
A
A
O
H
LYS
LEU
309
313
1.58
4
A
A
HA
H
ALA
LEU
291
301
1.14
4
A
A
OD1
HD1
ASP
HIS
427
430
1.59
5
A
A
OD2
HZ1
ASP
LYS
352
369
1.55
5
A
A
OE1
HZ3
GLU
LYS
306
309
1.57
6
A
A
O
HG1
LEU
THR
287
288
1.58
7
A
A
HH
HZ
TYR
PHE
319
346
1.30
7
A
A
HB3
HA
ALA
LEU
291
301
1.32
8
A
A
HA
HZ3
LYS
TRP
367
381
1.18
8
A
A
HG2
HG22
LYS
VAL
404
419
1.31
8
A
A
HG2
H
LYS
PHE
367
368
1.33
8
A
A
O
HG1
LEU
THR
287
288
1.55
9
A
A
HG
H
LEU
THR
287
288
1.31
9
A
A
OD2
HZ2
ASP
LYS
352
369
1.54
9
A
A
OE2
HZ1
GLU
LYS
399
424
1.59
10
A
A
HD1
HE1
TYR
TYR
284
286
1.24
10
A
A
HD1
HA3
TRP
GLY
381
387
1.28
10
A
A
HB
HB
VAL
VAL
344
351
1.31
10
A
A
OD2
HZ3
ASP
LYS
352
369
1.57
7
A
A
GLY
PRO
395
396
-149.84
1
A
GLU
281
70.83
-64.01
1
A
THR
288
-172.37
143.66
1
A
ASN
330
30.96
54.72
1
A
PRO
333
-68.74
-173.93
1
A
HIS
362
-129.77
-66.16
1
A
ASN
375
-97.57
59.56
1
A
GLU
383
62.14
-88.56
1
A
THR
410
-87.56
-151.24
1
A
ASP
411
-61.38
91.30
1
A
ALA
412
61.74
-78.82
1
A
GLU
413
71.04
132.88
1
A
HIS
430
73.50
-51.46
1
A
HIS
431
60.15
77.81
1
A
HIS
432
-134.27
-78.71
1
A
HIS
433
-176.86
-36.42
2
A
ARG
285
-140.50
44.17
2
A
PRO
295
-74.30
41.14
2
A
ALA
308
-47.51
153.88
2
A
ARG
332
-177.74
78.06
2
A
TYR
334
73.50
116.51
2
A
HIS
362
-100.70
-73.35
2
A
ASN
384
-175.70
-45.04
2
A
PRO
396
-17.25
-40.46
2
A
ASP
411
-172.14
-67.22
2
A
ALA
412
-161.24
-48.47
2
A
HIS
431
-175.84
-52.74
2
A
HIS
433
64.10
69.36
3
A
ILE
277
-80.03
38.36
3
A
GLU
281
72.76
161.92
3
A
PRO
295
-54.25
106.14
3
A
ALA
308
-49.09
160.42
3
A
PRO
333
-66.31
-151.13
3
A
HIS
362
-178.65
-43.72
3
A
ASN
375
28.85
44.60
3
A
PRO
396
-16.15
-50.63
3
A
THR
410
-150.27
-46.71
3
A
ALA
412
70.48
106.16
3
A
HIS
430
-63.61
95.68
3
A
HIS
431
-41.51
101.69
4
A
ILE
277
-88.99
37.23
4
A
LEU
313
-65.79
-165.45
4
A
ALA
314
-76.25
-168.98
4
A
HIS
327
-176.20
118.38
4
A
HIS
362
-167.79
-14.95
4
A
ASN
384
-166.93
-72.68
4
A
GLU
399
-59.97
-9.99
4
A
PRO
409
-66.31
84.64
4
A
ASP
411
73.70
-36.62
4
A
HIS
433
-162.34
-35.70
5
A
PHE
278
38.50
31.92
5
A
GLU
281
-62.85
92.24
5
A
ARG
285
73.38
-27.48
5
A
PRO
295
-67.68
81.33
5
A
HIS
327
-173.73
148.63
5
A
ARG
332
68.49
88.55
5
A
ASP
359
-116.70
52.46
5
A
HIS
362
-160.59
-128.97
5
A
ASN
375
29.86
46.05
5
A
THR
382
-104.34
55.11
5
A
GLU
383
-177.61
-56.79
5
A
PRO
396
-19.35
-45.17
5
A
ASP
411
-84.01
30.60
5
A
GLU
429
167.83
-25.57
5
A
HIS
430
66.45
-70.51
5
A
HIS
431
-165.03
72.34
6
A
ILE
277
-95.70
-74.43
6
A
GLU
281
170.51
-43.86
6
A
PRO
295
-65.90
97.59
6
A
ASN
330
67.65
-66.49
6
A
ARG
332
156.61
90.97
6
A
ASN
375
28.92
46.67
6
A
THR
382
60.73
-85.88
6
A
GLU
383
-133.01
-48.85
6
A
ASN
384
-163.17
72.09
6
A
PRO
396
-18.10
-42.65
6
A
ARG
408
67.81
118.11
6
A
ALA
412
178.87
-69.99
6
A
HIS
430
73.40
-51.33
7
A
ILE
277
-83.90
42.60
7
A
PHE
278
-35.66
121.90
7
A
GLU
281
173.56
-52.56
7
A
ARG
302
-164.12
113.49
7
A
HIS
327
-175.74
-174.00
7
A
THR
328
-47.47
159.93
7
A
ARG
332
104.45
-66.19
7
A
TYR
334
66.50
174.81
7
A
SER
357
-52.99
12.09
7
A
HIS
362
-125.50
-74.35
7
A
ASN
375
1.80
60.38
7
A
GLU
383
-157.04
-75.84
7
A
PRO
396
-46.37
-17.98
7
A
ASP
427
76.43
136.40
7
A
HIS
433
-136.58
-51.13
7
A
HIS
434
-179.78
-56.35
8
A
ILE
277
-84.55
40.43
8
A
ALA
279
-162.32
97.01
8
A
GLU
281
76.91
-151.43
8
A
TYR
286
75.88
-49.33
8
A
LEU
287
179.10
123.85
8
A
THR
288
-174.03
130.14
8
A
PRO
295
-54.50
97.05
8
A
ASN
375
-98.81
50.21
8
A
ASN
384
80.21
-39.70
8
A
PRO
396
-11.13
-57.03
8
A
THR
410
-67.13
87.72
8
A
ASP
427
-103.39
60.26
8
A
HIS
434
74.83
-47.79
9
A
GLU
281
-59.36
102.93
9
A
PRO
295
-60.57
89.92
9
A
ALA
308
-31.44
106.60
9
A
LYS
309
-69.62
91.76
9
A
ASN
330
72.94
-57.92
9
A
PRO
333
-84.07
-79.05
9
A
HIS
362
-105.05
-89.76
9
A
ASN
375
26.13
48.10
9
A
THR
382
63.86
-78.35
9
A
GLU
383
-163.29
-32.87
9
A
ASN
384
-155.61
19.39
9
A
GLU
399
-58.73
-9.22
9
A
ARG
408
106.44
-68.45
9
A
ASP
427
67.66
-175.08
9
A
GLU
429
-137.79
-103.31
10
A
PHE
278
-89.96
44.05
10
A
PRO
295
-48.81
102.96
10
A
ALA
308
-48.07
152.51
10
A
ARG
332
65.64
73.51
10
A
PRO
333
-83.92
39.50
10
A
HIS
362
-108.14
-79.09
10
A
ASN
375
-94.33
42.60
10
A
PRO
396
-22.95
-42.42
10
A
ALA
412
-146.30
-54.34
10
A
ASP
427
-107.40
-161.76
10
A
GLU
429
66.62
-81.17
10
A
HIS
432
76.08
-75.91
lowest energy, model 1
The structure of a N. meningitides protein targeted for vaccine development
1
N
N
MEMBRANE PROTEIN
beta-barrel, antigen, MEMBRANE PROTEIN
Q9JPI1_NEIME
UNP
1
245
Q9JPI1
SLPAEMPLIPVNQADTLIVDGEAVSLTGHSGNIFAPEGNYRYLTYGAEKLPGGSYALRVQGEPAKGEMLAGTAVYNGEVL
HFHTENGRPYPTRGRFAAKVDFGSKSVDGIIDSGDDLHMGTQKFKAAIDGNGFKGTWTENGGGDVSGRFYGPAGEEVAGK
YSYRPTDAEKGGFGVFAGKKEQD
245
427
2LFU
245
427
Q9JPI1
A
1
3
185
1
expression tag
MET
243
2LFU
A
Q9JPI1
UNP
1
1
expression tag
ALA
244
2LFU
A
Q9JPI1
UNP
2
1
expression tag
LEU
428
2LFU
A
Q9JPI1
UNP
186
1
expression tag
GLU
429
2LFU
A
Q9JPI1
UNP
187
1
expression tag
HIS
430
2LFU
A
Q9JPI1
UNP
188
1
expression tag
HIS
431
2LFU
A
Q9JPI1
UNP
189
1
expression tag
HIS
432
2LFU
A
Q9JPI1
UNP
190
1
expression tag
HIS
433
2LFU
A
Q9JPI1
UNP
191
1
expression tag
HIS
434
2LFU
A
Q9JPI1
UNP
192
1
expression tag
HIS
435
2LFU
A
Q9JPI1
UNP
193
2
9
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
TYR
289
A
TYR
47
A
LYS
293
A
LYS
51
A
TYR
299
A
TYR
57
A
VAL
303
A
VAL
61
A
THR
316
A
THR
74
A
HIS
325
A
HIS
83
A
THR
336
A
THR
94
A
ASP
345
A
ASP
103
A
SER
350
A
SER
108
A
ASP
356
A
ASP
114
A
GLN
366
A
GLN
124
A
ILE
372
A
ILE
130
A
GLY
376
A
GLY
134
A
TRP
381
A
TRP
139
A
GLY
387
A
GLY
145
A
PHE
393
A
PHE
151
A
GLU
400
A
GLU
158
A
TYR
407
A
TYR
165
A
VAL
419
A
VAL
177
A
LYS
424
A
LYS
182
A
THR
316
A
THR
74
A
HIS
325
A
HIS
83