1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Eletsky, A.
Winge, D.R.
Lee, H.
Lee, D.
Kohan, E.
Hamilton, K.
Acton, T.B.
Xiao, R.
Everett, J.K.
Prestegard, J.H.
Montelione, G.T.
Szyperski, T.
Northeast Structural Genomics Consortium (NESG)
Mitochondrial Protein Partnership (MPP)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
US
Biochemistry
BICHAW
0033
0006-2960
51
8475
8477
10.1021/bi301171u
23062074
Solution NMR structure of yeast succinate dehydrogenase flavinylation factor sdh5 reveals a putative sdh1 binding site.
2012
13193.031
Succinate dehydrogenase assembly factor 2, mitochondrial
UNP residues 55-152
1
man
polymer
SDH assembly factor 2, Early meiotic induction protein 5, Succinate dehydrogenase subunit 5, mitochondrial
no
no
MGHHHHHHSHMIKRTNEPLDKKRARLIYQSRKRGILETDLLLSGFAAKYLKKMNEEELEEYDSLLNELDWDIYYWATKNF
KTSPLPDKWANSKLLKQLQEFSENKEKEI
MGHHHHHHSHMIKRTNEPLDKKRARLIYQSRKRGILETDLLLSGFAAKYLKKMNEEELEEYDSLLNELDWDIYYWATKNF
KTSPLPDKWANSKLLKQLQEFSENKEKEI
A
YT682A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Baker's yeast
ATCC 204508 / S288c
sample
EMI5, SDH5, YOL071W
559292
Saccharomyces cerevisiae
469008
Escherichia coli
BL21(DE3)pMgK
pET15_NESG
Northeast Structural Genomics Consortium
NESG
PSI:Biology
Mitochondrial Protein Partnership
MPP
PSI:Biology
repository
Initial release
Database references
Database references
1
0
2012-01-04
1
1
2012-12-05
1
2
2013-01-30
Y
BMRB
Y
RCSB
2011-11-22
REL
REL
REL
1723
525
390
406
402
0
0
59
59
target function
100
20
2D 1H-15N HSQC
2D 1H-13C CT-HSQC aliphatic
3D HNCO
3D CBCA(CO)NH
3D HNCACB
3D HBHA(CO)NH
3D simutaneous 13C-aromatic,13C-aliphatic,15N edited 1H-1H NOESY
3D HN(CA)CO
2D 1H-13C CT-HSQC aromatic
3D HCCH-TOCSY
3D (H)CCH-COSY aliphatic
3D (H)CCH-COSY aromatic
1D 15N T1
1D 15N T2
2D 1H-13C CT-HSQC methyl
2D J-resolved 1H-15N HSQC
2D J-resolved 1H-15N HSQC
2D J-resolved 1H-15N HSQC
1.0
mM
[U-100% 13C; U-100% 15N]
20
mM
100
mM
5
mM
10
mM
0.02
%
50
uM
1.1
mM
[5% 13C; U-100% 15N]
20
mM
100
mM
5
mM
10
mM
0.02
%
50
uM
0.7
mM
[5% 13C; U-100% 15N]
20
mM
100
mM
5
mM
10
mM
0.02
%
50
uM
4
%
4
%
1.1
mM
[5% 13C; U-100% 15N]
20
mM
100
mM
5
mM
10
mM
0.02
%
50
uM
6.5
ambient
298
K
Structure determination was performed by running CYANA and ASDP in parallel using NOE-based constraints and PHI and PSI dihedral angle constraints from TALOS+. Consensus peak assignments were selected and used in iterative refinement with CYANA, with RDC constraints added at later stages. The 20 conformers out of 100 with the lowest target function were further refined by simulated annealing in explicit water bath using the program CNS with PARAM19 force field
simulated annealing
1
lowest energy
1.0 mM [U-100% 13C; U-100% 15N] YT682A, 20 mM MES, 100 mM sodium chloride, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide, 50 uM DSS, 95% H2O/5% D2O
95% H2O/5% D2O
1.1 mM [5% 13C; U-100% 15N] YT682A, 20 mM MES, 100 mM sodium chloride, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide, 50 uM DSS, 95% H2O/5% D2O
95% H2O/5% D2O
0.7 mM [5% 13C; U-100% 15N] YT682A, 20 mM MES, 100 mM sodium chloride, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide, 50 uM DSS, 4 % C12E5 PEG, 4 % hexanol, 90% H2O/10% D2O
90% H2O/10% D2O
1.1 mM [5% 13C; U-100% 15N] YT682A, 20 mM MES, 100 mM sodium chloride, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide, 50 uM DSS, 90% H2O/10% D2O
90% H2O/10% D2O
Brunger, Adams, Clore, Gros, Nilges and Read
refinement, structure solution, geometry optimization
CNS
1.2
Guntert, Mumenthaler and Wuthrich
refinement, geometry optimization, structure solution
CYANA
3.0
Huang, Tejero, Powers and Montelione
data analysis, refinement
ASDP
1.0
Zimmerman, Moseley, Kulikowski and Montelione
data analysis, chemical shift assignment
AutoAssign
2.3.0
Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
processing
NMRPipe
Bartels et al.
data analysis
XEASY
1.3.13
Guntert
processing
PROSA
6.4
Varian
collection
VNMRJ
2.2D
Shen, Cornilescu, Delaglio and Bax
geometry optimization
TALOS+
Keller and Wuthrich
data analysis,peak picking,chemical shift assignment
CARA
1.8.4
Brunger, Adams, Clore, Gros, Nilges and Read
refinement
CNS
750
Varian
INOVA
Varian INOVA
600
Varian
INOVA
Varian INOVA
600
Varian
INOVA
Varian INOVA
MET
1
n
1
MET
1
A
GLY
2
n
2
GLY
2
A
HIS
3
n
3
HIS
3
A
HIS
4
n
4
HIS
4
A
HIS
5
n
5
HIS
5
A
HIS
6
n
6
HIS
6
A
HIS
7
n
7
HIS
7
A
HIS
8
n
8
HIS
8
A
SER
9
n
9
SER
9
A
HIS
10
n
10
HIS
10
A
MET
11
n
11
MET
11
A
ILE
12
n
12
ILE
12
A
LYS
13
n
13
LYS
13
A
ARG
14
n
14
ARG
14
A
THR
15
n
15
THR
15
A
ASN
16
n
16
ASN
16
A
GLU
17
n
17
GLU
17
A
PRO
18
n
18
PRO
18
A
LEU
19
n
19
LEU
19
A
ASP
20
n
20
ASP
20
A
LYS
21
n
21
LYS
21
A
LYS
22
n
22
LYS
22
A
ARG
23
n
23
ARG
23
A
ALA
24
n
24
ALA
24
A
ARG
25
n
25
ARG
25
A
LEU
26
n
26
LEU
26
A
ILE
27
n
27
ILE
27
A
TYR
28
n
28
TYR
28
A
GLN
29
n
29
GLN
29
A
SER
30
n
30
SER
30
A
ARG
31
n
31
ARG
31
A
LYS
32
n
32
LYS
32
A
ARG
33
n
33
ARG
33
A
GLY
34
n
34
GLY
34
A
ILE
35
n
35
ILE
35
A
LEU
36
n
36
LEU
36
A
GLU
37
n
37
GLU
37
A
THR
38
n
38
THR
38
A
ASP
39
n
39
ASP
39
A
LEU
40
n
40
LEU
40
A
LEU
41
n
41
LEU
41
A
LEU
42
n
42
LEU
42
A
SER
43
n
43
SER
43
A
GLY
44
n
44
GLY
44
A
PHE
45
n
45
PHE
45
A
ALA
46
n
46
ALA
46
A
ALA
47
n
47
ALA
47
A
LYS
48
n
48
LYS
48
A
TYR
49
n
49
TYR
49
A
LEU
50
n
50
LEU
50
A
LYS
51
n
51
LYS
51
A
LYS
52
n
52
LYS
52
A
MET
53
n
53
MET
53
A
ASN
54
n
54
ASN
54
A
GLU
55
n
55
GLU
55
A
GLU
56
n
56
GLU
56
A
GLU
57
n
57
GLU
57
A
LEU
58
n
58
LEU
58
A
GLU
59
n
59
GLU
59
A
GLU
60
n
60
GLU
60
A
TYR
61
n
61
TYR
61
A
ASP
62
n
62
ASP
62
A
SER
63
n
63
SER
63
A
LEU
64
n
64
LEU
64
A
LEU
65
n
65
LEU
65
A
ASN
66
n
66
ASN
66
A
GLU
67
n
67
GLU
67
A
LEU
68
n
68
LEU
68
A
ASP
69
n
69
ASP
69
A
TRP
70
n
70
TRP
70
A
ASP
71
n
71
ASP
71
A
ILE
72
n
72
ILE
72
A
TYR
73
n
73
TYR
73
A
TYR
74
n
74
TYR
74
A
TRP
75
n
75
TRP
75
A
ALA
76
n
76
ALA
76
A
THR
77
n
77
THR
77
A
LYS
78
n
78
LYS
78
A
ASN
79
n
79
ASN
79
A
PHE
80
n
80
PHE
80
A
LYS
81
n
81
LYS
81
A
THR
82
n
82
THR
82
A
SER
83
n
83
SER
83
A
PRO
84
n
84
PRO
84
A
LEU
85
n
85
LEU
85
A
PRO
86
n
86
PRO
86
A
ASP
87
n
87
ASP
87
A
LYS
88
n
88
LYS
88
A
TRP
89
n
89
TRP
89
A
ALA
90
n
90
ALA
90
A
ASN
91
n
91
ASN
91
A
SER
92
n
92
SER
92
A
LYS
93
n
93
LYS
93
A
LEU
94
n
94
LEU
94
A
LEU
95
n
95
LEU
95
A
LYS
96
n
96
LYS
96
A
GLN
97
n
97
GLN
97
A
LEU
98
n
98
LEU
98
A
GLN
99
n
99
GLN
99
A
GLU
100
n
100
GLU
100
A
PHE
101
n
101
PHE
101
A
SER
102
n
102
SER
102
A
GLU
103
n
103
GLU
103
A
ASN
104
n
104
ASN
104
A
LYS
105
n
105
LYS
105
A
GLU
106
n
106
GLU
106
A
LYS
107
n
107
LYS
107
A
GLU
108
n
108
GLU
108
A
ILE
109
n
109
ILE
109
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
ASN
104
-90.02
-77.27
1
A
LYS
105
45.65
-80.85
2
A
HIS
4
-154.71
79.52
2
A
ASN
16
59.91
-162.15
2
A
LYS
78
-67.42
84.69
2
A
THR
82
-162.83
-32.34
3
A
SER
9
62.17
179.75
3
A
LYS
107
43.40
84.67
4
A
HIS
5
54.79
80.50
4
A
SER
9
-136.39
-68.70
4
A
LYS
13
64.01
95.48
4
A
THR
15
-151.71
-79.02
4
A
ASN
16
-138.93
-65.89
5
A
GLU
17
55.84
79.45
5
A
LYS
105
-68.84
87.95
6
A
LYS
78
55.07
70.91
7
A
HIS
3
-79.47
-81.86
7
A
HIS
6
-131.94
-78.43
7
A
HIS
7
-141.77
-79.56
7
A
HIS
8
58.54
-163.54
7
A
SER
9
67.85
-173.56
7
A
MET
11
63.05
178.48
7
A
PHE
80
65.28
-79.13
7
A
LYS
81
51.41
-74.82
8
A
HIS
4
-144.92
-7.35
8
A
SER
9
59.95
-166.19
8
A
ARG
14
56.27
82.79
8
A
GLU
106
-146.04
-74.80
9
A
HIS
8
-162.24
11.69
9
A
ILE
12
-100.82
75.79
9
A
ASN
16
72.60
164.29
9
A
LYS
107
60.48
103.77
10
A
SER
9
-68.67
-87.93
10
A
LYS
13
-69.67
99.95
10
A
GLU
17
63.35
91.68
10
A
ASN
79
-94.43
48.59
11
A
HIS
5
-62.98
96.85
11
A
HIS
7
-132.92
-37.39
11
A
MET
11
-55.80
104.73
11
A
ILE
12
63.22
128.92
11
A
ASN
79
-65.51
-72.75
12
A
HIS
7
-133.06
-55.75
12
A
LYS
78
-96.14
39.68
12
A
ASN
79
-110.68
51.22
12
A
GLU
106
-127.41
-81.11
12
A
LYS
107
-162.92
36.66
13
A
HIS
5
-151.03
50.41
13
A
HIS
10
65.13
95.93
13
A
ILE
12
-67.01
95.55
13
A
ASN
79
-67.37
-71.73
13
A
PHE
80
67.14
-12.96
13
A
LYS
105
-69.65
87.68
13
A
LYS
107
59.18
19.57
14
A
HIS
10
-160.94
20.42
14
A
ARG
33
-149.65
-157.84
14
A
ASN
79
-90.43
41.16
14
A
LYS
105
-69.02
81.56
15
A
HIS
5
62.52
-168.08
15
A
HIS
8
-147.16
-33.16
15
A
SER
9
55.82
-158.22
15
A
LYS
13
65.04
113.32
15
A
THR
15
-135.60
-65.46
16
A
HIS
10
-84.80
49.29
16
A
LYS
13
-67.40
88.88
16
A
GLU
17
58.19
72.15
16
A
THR
82
-131.45
-30.02
16
A
LYS
105
-87.13
31.49
17
A
GLU
17
-152.26
77.72
17
A
LYS
105
-80.87
41.90
18
A
HIS
8
-79.92
47.53
19
A
HIS
6
57.87
85.58
19
A
HIS
10
-83.69
31.97
19
A
ILE
12
-69.21
87.92
19
A
ASN
16
-95.38
-78.33
19
A
GLU
17
51.23
83.76
19
A
ASN
79
-127.12
-74.45
19
A
PHE
80
66.58
-4.11
20
A
SER
9
59.12
-164.86
20
A
HIS
10
72.48
-9.16
20
A
ILE
12
45.49
92.42
20
A
ASN
16
65.48
76.84
20
A
GLU
17
61.33
98.69
20
A
ALA
90
-58.82
102.85
Succinate dehydrogenase assembly factor 2, mitochondrial
lowest energy, model 1
Solution NMR Structure of mitochondrial succinate dehydrogenase assembly factor 2 from Saccharomyces cerevisiae, Northeast Structural Genomics Consortium Target YT682A
1
N
N
A
PRO
18
A
PRO
18
HELX_P
A
ARG
31
A
ARG
31
1
1
14
A
ILE
35
A
ILE
35
HELX_P
A
MET
53
A
MET
53
1
2
19
A
ASN
54
A
ASN
54
HELX_P
A
ASN
66
A
ASN
66
1
3
13
A
LEU
68
A
LEU
68
HELX_P
A
THR
77
A
THR
77
1
4
10
A
PRO
86
A
PRO
86
HELX_P
A
ASN
91
A
ASN
91
1
5
6
A
SER
92
A
SER
92
HELX_P
A
LYS
105
A
LYS
105
1
6
14
PROTEIN BINDING
Structural Genomics, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG), PSI-Biology, Protein Structure Initiative, PROTEIN BINDING, Mitochondrial Protein Partnership, MPP
SDHF2_YEAST
UNP
1
55
Q08230
IKRTNEPLDKKRARLIYQSRKRGILETDLLLSGFAAKYLKKMNEEELEEYDSLLNELDWDIYYWATKNFKTSPLPDKWAN
SKLLKQLQEFSENKEKEI
55
152
2LM4
12
109
Q08230
A
1
12
109
1
EXPRESSION TAG
MET
1
2LM4
A
Q08230
UNP
1
1
EXPRESSION TAG
GLY
2
2LM4
A
Q08230
UNP
2
1
EXPRESSION TAG
HIS
3
2LM4
A
Q08230
UNP
3
1
EXPRESSION TAG
HIS
4
2LM4
A
Q08230
UNP
4
1
EXPRESSION TAG
HIS
5
2LM4
A
Q08230
UNP
5
1
EXPRESSION TAG
HIS
6
2LM4
A
Q08230
UNP
6
1
EXPRESSION TAG
HIS
7
2LM4
A
Q08230
UNP
7
1
EXPRESSION TAG
HIS
8
2LM4
A
Q08230
UNP
8
1
EXPRESSION TAG
SER
9
2LM4
A
Q08230
UNP
9
1
EXPRESSION TAG
HIS
10
2LM4
A
Q08230
UNP
10
1
EXPRESSION TAG
MET
11
2LM4
A
Q08230
UNP
11