1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Eletsky, A. Winge, D.R. Lee, H. Lee, D. Kohan, E. Hamilton, K. Acton, T.B. Xiao, R. Everett, J.K. Prestegard, J.H. Montelione, G.T. Szyperski, T. Northeast Structural Genomics Consortium (NESG) Mitochondrial Protein Partnership (MPP) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking US Biochemistry BICHAW 0033 0006-2960 51 8475 8477 10.1021/bi301171u 23062074 Solution NMR structure of yeast succinate dehydrogenase flavinylation factor sdh5 reveals a putative sdh1 binding site. 2012 13193.031 Succinate dehydrogenase assembly factor 2, mitochondrial UNP residues 55-152 1 man polymer SDH assembly factor 2, Early meiotic induction protein 5, Succinate dehydrogenase subunit 5, mitochondrial no no MGHHHHHHSHMIKRTNEPLDKKRARLIYQSRKRGILETDLLLSGFAAKYLKKMNEEELEEYDSLLNELDWDIYYWATKNF KTSPLPDKWANSKLLKQLQEFSENKEKEI MGHHHHHHSHMIKRTNEPLDKKRARLIYQSRKRGILETDLLLSGFAAKYLKKMNEEELEEYDSLLNELDWDIYYWATKNF KTSPLPDKWANSKLLKQLQEFSENKEKEI A YT682A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Baker's yeast ATCC 204508 / S288c sample EMI5, SDH5, YOL071W 559292 Saccharomyces cerevisiae 469008 Escherichia coli BL21(DE3)pMgK pET15_NESG Northeast Structural Genomics Consortium NESG PSI:Biology Mitochondrial Protein Partnership MPP PSI:Biology repository Initial release Database references Database references 1 0 2012-01-04 1 1 2012-12-05 1 2 2013-01-30 Y BMRB Y RCSB 2011-11-22 REL REL REL 1723 525 390 406 402 0 0 59 59 target function 100 20 2D 1H-15N HSQC 2D 1H-13C CT-HSQC aliphatic 3D HNCO 3D CBCA(CO)NH 3D HNCACB 3D HBHA(CO)NH 3D simutaneous 13C-aromatic,13C-aliphatic,15N edited 1H-1H NOESY 3D HN(CA)CO 2D 1H-13C CT-HSQC aromatic 3D HCCH-TOCSY 3D (H)CCH-COSY aliphatic 3D (H)CCH-COSY aromatic 1D 15N T1 1D 15N T2 2D 1H-13C CT-HSQC methyl 2D J-resolved 1H-15N HSQC 2D J-resolved 1H-15N HSQC 2D J-resolved 1H-15N HSQC 1.0 mM [U-100% 13C; U-100% 15N] 20 mM 100 mM 5 mM 10 mM 0.02 % 50 uM 1.1 mM [5% 13C; U-100% 15N] 20 mM 100 mM 5 mM 10 mM 0.02 % 50 uM 0.7 mM [5% 13C; U-100% 15N] 20 mM 100 mM 5 mM 10 mM 0.02 % 50 uM 4 % 4 % 1.1 mM [5% 13C; U-100% 15N] 20 mM 100 mM 5 mM 10 mM 0.02 % 50 uM 6.5 ambient 298 K Structure determination was performed by running CYANA and ASDP in parallel using NOE-based constraints and PHI and PSI dihedral angle constraints from TALOS+. Consensus peak assignments were selected and used in iterative refinement with CYANA, with RDC constraints added at later stages. The 20 conformers out of 100 with the lowest target function were further refined by simulated annealing in explicit water bath using the program CNS with PARAM19 force field simulated annealing 1 lowest energy 1.0 mM [U-100% 13C; U-100% 15N] YT682A, 20 mM MES, 100 mM sodium chloride, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide, 50 uM DSS, 95% H2O/5% D2O 95% H2O/5% D2O 1.1 mM [5% 13C; U-100% 15N] YT682A, 20 mM MES, 100 mM sodium chloride, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide, 50 uM DSS, 95% H2O/5% D2O 95% H2O/5% D2O 0.7 mM [5% 13C; U-100% 15N] YT682A, 20 mM MES, 100 mM sodium chloride, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide, 50 uM DSS, 4 % C12E5 PEG, 4 % hexanol, 90% H2O/10% D2O 90% H2O/10% D2O 1.1 mM [5% 13C; U-100% 15N] YT682A, 20 mM MES, 100 mM sodium chloride, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide, 50 uM DSS, 90% H2O/10% D2O 90% H2O/10% D2O Brunger, Adams, Clore, Gros, Nilges and Read refinement, structure solution, geometry optimization CNS 1.2 Guntert, Mumenthaler and Wuthrich refinement, geometry optimization, structure solution CYANA 3.0 Huang, Tejero, Powers and Montelione data analysis, refinement ASDP 1.0 Zimmerman, Moseley, Kulikowski and Montelione data analysis, chemical shift assignment AutoAssign 2.3.0 Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax processing NMRPipe Bartels et al. data analysis XEASY 1.3.13 Guntert processing PROSA 6.4 Varian collection VNMRJ 2.2D Shen, Cornilescu, Delaglio and Bax geometry optimization TALOS+ Keller and Wuthrich data analysis,peak picking,chemical shift assignment CARA 1.8.4 Brunger, Adams, Clore, Gros, Nilges and Read refinement CNS 750 Varian INOVA Varian INOVA 600 Varian INOVA Varian INOVA 600 Varian INOVA Varian INOVA MET 1 n 1 MET 1 A GLY 2 n 2 GLY 2 A HIS 3 n 3 HIS 3 A HIS 4 n 4 HIS 4 A HIS 5 n 5 HIS 5 A HIS 6 n 6 HIS 6 A HIS 7 n 7 HIS 7 A HIS 8 n 8 HIS 8 A SER 9 n 9 SER 9 A HIS 10 n 10 HIS 10 A MET 11 n 11 MET 11 A ILE 12 n 12 ILE 12 A LYS 13 n 13 LYS 13 A ARG 14 n 14 ARG 14 A THR 15 n 15 THR 15 A ASN 16 n 16 ASN 16 A GLU 17 n 17 GLU 17 A PRO 18 n 18 PRO 18 A LEU 19 n 19 LEU 19 A ASP 20 n 20 ASP 20 A LYS 21 n 21 LYS 21 A LYS 22 n 22 LYS 22 A ARG 23 n 23 ARG 23 A ALA 24 n 24 ALA 24 A ARG 25 n 25 ARG 25 A LEU 26 n 26 LEU 26 A ILE 27 n 27 ILE 27 A TYR 28 n 28 TYR 28 A GLN 29 n 29 GLN 29 A SER 30 n 30 SER 30 A ARG 31 n 31 ARG 31 A LYS 32 n 32 LYS 32 A ARG 33 n 33 ARG 33 A GLY 34 n 34 GLY 34 A ILE 35 n 35 ILE 35 A LEU 36 n 36 LEU 36 A GLU 37 n 37 GLU 37 A THR 38 n 38 THR 38 A ASP 39 n 39 ASP 39 A LEU 40 n 40 LEU 40 A LEU 41 n 41 LEU 41 A LEU 42 n 42 LEU 42 A SER 43 n 43 SER 43 A GLY 44 n 44 GLY 44 A PHE 45 n 45 PHE 45 A ALA 46 n 46 ALA 46 A ALA 47 n 47 ALA 47 A LYS 48 n 48 LYS 48 A TYR 49 n 49 TYR 49 A LEU 50 n 50 LEU 50 A LYS 51 n 51 LYS 51 A LYS 52 n 52 LYS 52 A MET 53 n 53 MET 53 A ASN 54 n 54 ASN 54 A GLU 55 n 55 GLU 55 A GLU 56 n 56 GLU 56 A GLU 57 n 57 GLU 57 A LEU 58 n 58 LEU 58 A GLU 59 n 59 GLU 59 A GLU 60 n 60 GLU 60 A TYR 61 n 61 TYR 61 A ASP 62 n 62 ASP 62 A SER 63 n 63 SER 63 A LEU 64 n 64 LEU 64 A LEU 65 n 65 LEU 65 A ASN 66 n 66 ASN 66 A GLU 67 n 67 GLU 67 A LEU 68 n 68 LEU 68 A ASP 69 n 69 ASP 69 A TRP 70 n 70 TRP 70 A ASP 71 n 71 ASP 71 A ILE 72 n 72 ILE 72 A TYR 73 n 73 TYR 73 A TYR 74 n 74 TYR 74 A TRP 75 n 75 TRP 75 A ALA 76 n 76 ALA 76 A THR 77 n 77 THR 77 A LYS 78 n 78 LYS 78 A ASN 79 n 79 ASN 79 A PHE 80 n 80 PHE 80 A LYS 81 n 81 LYS 81 A THR 82 n 82 THR 82 A SER 83 n 83 SER 83 A PRO 84 n 84 PRO 84 A LEU 85 n 85 LEU 85 A PRO 86 n 86 PRO 86 A ASP 87 n 87 ASP 87 A LYS 88 n 88 LYS 88 A TRP 89 n 89 TRP 89 A ALA 90 n 90 ALA 90 A ASN 91 n 91 ASN 91 A SER 92 n 92 SER 92 A LYS 93 n 93 LYS 93 A LEU 94 n 94 LEU 94 A LEU 95 n 95 LEU 95 A LYS 96 n 96 LYS 96 A GLN 97 n 97 GLN 97 A LEU 98 n 98 LEU 98 A GLN 99 n 99 GLN 99 A GLU 100 n 100 GLU 100 A PHE 101 n 101 PHE 101 A SER 102 n 102 SER 102 A GLU 103 n 103 GLU 103 A ASN 104 n 104 ASN 104 A LYS 105 n 105 LYS 105 A GLU 106 n 106 GLU 106 A LYS 107 n 107 LYS 107 A GLU 108 n 108 GLU 108 A ILE 109 n 109 ILE 109 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A ASN 104 -90.02 -77.27 1 A LYS 105 45.65 -80.85 2 A HIS 4 -154.71 79.52 2 A ASN 16 59.91 -162.15 2 A LYS 78 -67.42 84.69 2 A THR 82 -162.83 -32.34 3 A SER 9 62.17 179.75 3 A LYS 107 43.40 84.67 4 A HIS 5 54.79 80.50 4 A SER 9 -136.39 -68.70 4 A LYS 13 64.01 95.48 4 A THR 15 -151.71 -79.02 4 A ASN 16 -138.93 -65.89 5 A GLU 17 55.84 79.45 5 A LYS 105 -68.84 87.95 6 A LYS 78 55.07 70.91 7 A HIS 3 -79.47 -81.86 7 A HIS 6 -131.94 -78.43 7 A HIS 7 -141.77 -79.56 7 A HIS 8 58.54 -163.54 7 A SER 9 67.85 -173.56 7 A MET 11 63.05 178.48 7 A PHE 80 65.28 -79.13 7 A LYS 81 51.41 -74.82 8 A HIS 4 -144.92 -7.35 8 A SER 9 59.95 -166.19 8 A ARG 14 56.27 82.79 8 A GLU 106 -146.04 -74.80 9 A HIS 8 -162.24 11.69 9 A ILE 12 -100.82 75.79 9 A ASN 16 72.60 164.29 9 A LYS 107 60.48 103.77 10 A SER 9 -68.67 -87.93 10 A LYS 13 -69.67 99.95 10 A GLU 17 63.35 91.68 10 A ASN 79 -94.43 48.59 11 A HIS 5 -62.98 96.85 11 A HIS 7 -132.92 -37.39 11 A MET 11 -55.80 104.73 11 A ILE 12 63.22 128.92 11 A ASN 79 -65.51 -72.75 12 A HIS 7 -133.06 -55.75 12 A LYS 78 -96.14 39.68 12 A ASN 79 -110.68 51.22 12 A GLU 106 -127.41 -81.11 12 A LYS 107 -162.92 36.66 13 A HIS 5 -151.03 50.41 13 A HIS 10 65.13 95.93 13 A ILE 12 -67.01 95.55 13 A ASN 79 -67.37 -71.73 13 A PHE 80 67.14 -12.96 13 A LYS 105 -69.65 87.68 13 A LYS 107 59.18 19.57 14 A HIS 10 -160.94 20.42 14 A ARG 33 -149.65 -157.84 14 A ASN 79 -90.43 41.16 14 A LYS 105 -69.02 81.56 15 A HIS 5 62.52 -168.08 15 A HIS 8 -147.16 -33.16 15 A SER 9 55.82 -158.22 15 A LYS 13 65.04 113.32 15 A THR 15 -135.60 -65.46 16 A HIS 10 -84.80 49.29 16 A LYS 13 -67.40 88.88 16 A GLU 17 58.19 72.15 16 A THR 82 -131.45 -30.02 16 A LYS 105 -87.13 31.49 17 A GLU 17 -152.26 77.72 17 A LYS 105 -80.87 41.90 18 A HIS 8 -79.92 47.53 19 A HIS 6 57.87 85.58 19 A HIS 10 -83.69 31.97 19 A ILE 12 -69.21 87.92 19 A ASN 16 -95.38 -78.33 19 A GLU 17 51.23 83.76 19 A ASN 79 -127.12 -74.45 19 A PHE 80 66.58 -4.11 20 A SER 9 59.12 -164.86 20 A HIS 10 72.48 -9.16 20 A ILE 12 45.49 92.42 20 A ASN 16 65.48 76.84 20 A GLU 17 61.33 98.69 20 A ALA 90 -58.82 102.85 Succinate dehydrogenase assembly factor 2, mitochondrial lowest energy, model 1 Solution NMR Structure of mitochondrial succinate dehydrogenase assembly factor 2 from Saccharomyces cerevisiae, Northeast Structural Genomics Consortium Target YT682A 1 N N A PRO 18 A PRO 18 HELX_P A ARG 31 A ARG 31 1 1 14 A ILE 35 A ILE 35 HELX_P A MET 53 A MET 53 1 2 19 A ASN 54 A ASN 54 HELX_P A ASN 66 A ASN 66 1 3 13 A LEU 68 A LEU 68 HELX_P A THR 77 A THR 77 1 4 10 A PRO 86 A PRO 86 HELX_P A ASN 91 A ASN 91 1 5 6 A SER 92 A SER 92 HELX_P A LYS 105 A LYS 105 1 6 14 PROTEIN BINDING Structural Genomics, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG), PSI-Biology, Protein Structure Initiative, PROTEIN BINDING, Mitochondrial Protein Partnership, MPP SDHF2_YEAST UNP 1 55 Q08230 IKRTNEPLDKKRARLIYQSRKRGILETDLLLSGFAAKYLKKMNEEELEEYDSLLNELDWDIYYWATKNFKTSPLPDKWAN SKLLKQLQEFSENKEKEI 55 152 2LM4 12 109 Q08230 A 1 12 109 1 EXPRESSION TAG MET 1 2LM4 A Q08230 UNP 1 1 EXPRESSION TAG GLY 2 2LM4 A Q08230 UNP 2 1 EXPRESSION TAG HIS 3 2LM4 A Q08230 UNP 3 1 EXPRESSION TAG HIS 4 2LM4 A Q08230 UNP 4 1 EXPRESSION TAG HIS 5 2LM4 A Q08230 UNP 5 1 EXPRESSION TAG HIS 6 2LM4 A Q08230 UNP 6 1 EXPRESSION TAG HIS 7 2LM4 A Q08230 UNP 7 1 EXPRESSION TAG HIS 8 2LM4 A Q08230 UNP 8 1 EXPRESSION TAG SER 9 2LM4 A Q08230 UNP 9 1 EXPRESSION TAG HIS 10 2LM4 A Q08230 UNP 10 1 EXPRESSION TAG MET 11 2LM4 A Q08230 UNP 11