1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Kristiansen, P. Bie Andersen, T. Huszenicza, Z. Andreotti, A.H. Spurkland, A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N N N 159 S C N 160 N C N 161 N O N 162 S C N 163 N C N 164 N C N 165 N C N 166 N O N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N N N 181 S C N 182 N C N 183 N O N 184 N C N 185 N C N 186 N C N 187 N C N 188 N O N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N N N 203 S C N 204 N C N 205 N O N 206 N C N 207 N C N 208 N C N 209 N C N 210 N N N 211 N O N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N N N 228 S C N 229 N C N 230 N O N 231 N C N 232 N C N 233 N C N 234 N O N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N N N 245 S C N 246 N C N 247 N O N 248 N C N 249 N O N 250 N O N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N N N 259 S C N 260 N C N 261 N O N 262 R C N 263 N O N 264 N C N 265 N O N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N N N 276 S C N 277 N C N 278 N O N 279 N C Y 280 N C Y 281 N C Y 282 N C Y 283 N N Y 284 N C Y 285 N C Y 286 N C Y 287 N C Y 288 N C N 289 N O N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N N N 303 S C N 304 N C N 305 N O N 306 N C Y 307 N C Y 308 N C Y 309 N C Y 310 N C Y 311 N C Y 312 N C N 313 N O N 314 N O N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N N N 327 S C N 328 N C N 329 N O N 330 N C N 331 N C N 332 N C N 333 N O N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N doub N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N doub N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N doub N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N doub N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N doub N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N doub N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N doub N 269 N sing N 270 N sing N 271 N sing N 272 N sing Y 273 N doub Y 274 N sing Y 275 N sing N 276 N sing Y 277 N doub Y 278 N sing Y 279 N sing N 280 N sing Y 281 N sing Y 282 N doub N 283 N sing Y 284 N doub N 285 N sing Y 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing Y 301 N doub Y 302 N sing Y 303 N sing N 304 N sing Y 305 N doub N 306 N sing Y 307 N doub N 308 N sing Y 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N doub N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing To be Published 0353 The SH3 domains of the Tec family kinase Itk and the Src family kinase Lck compete for adjacent sites on T-cell specific adapter protein 10.2210/pdb2lmj/pdb pdb_00002lmj 10.13018/BMR18119 7658.336 Tyrosine-protein kinase ITK/TSK 2.7.10.2 SH3 domain residues 171-231 1 man polymer Interleukin-2-inducible T cell kinase, IL-2-inducible T cell kinase, Kinase EMT, T-cell-specific kinase, Tyrosine-protein kinase Lyk no no GPLGSPEETVVIALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDRNGHEGYVPSSYLVEKSP GPLGSPEETVVIALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDRNGHEGYVPSSYLVEKSP A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample ITK, EMT, LYK 9606 Homo sapiens 511693 Escherichia coli bl21 pGex-6P-1 chem_comp_atom chem_comp_bond database_2 pdbx_nmr_software pdbx_nmr_spectrometer struct_ref_seq_dif repository Initial release Data collection Database references 1 0 2012-12-05 1 1 2024-05-01 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _pdbx_nmr_spectrometer.model _struct_ref_seq_dif.details BMRB Y RCSB 2011-12-05 REL REL REL 1286 84 40 40 structures with the lowest energy 100 20 2D 1H-15N HSQC 2D 1H-13C HSQC 3D 1H-15N NOESY 3D HNCO 3D CBCA(CO)NH 3D HNCA 3D HNCACB 3D HBHA(CO)NH 3D HN(CO)CA 3D HBHANH 3D HN(CA)CO 3D C(CO)NH 3D H(CCO)NH 2D 1H-13C HSQC 2D 1H-13C HSQC 3D HCCH-TOCSY 3D CCH-TOCSY 3D 1H-13C NOESY 2D 1H-15N HSQC 2D 1H-15N HSQC 2D 1H-15N HSQC 2D 1H-15N HSQC 2D 1H-15N HSQC 1H 1H 1.0 mM [U-98% 13C; U-98% 15N] 95 % 5 % 98% .2 mM 20 mM 1.0 mM [U-98% 13C; U-98% 15N] 100 % 99.98 .2 mM 20 mM 20 6.5 ambient 298 K 20 6.5 ambient 293 K 20 6.5 ambient 288 K 20 6.5 ambient 283 K 20 6.5 ambient 303 K 20 6.5 ambient 308 K molecular dynamics 1 lowest energy 1.0 mM [U-98% 13C; U-98% 15N] ITK-SH3, 95 % H2O, 5 % 98% D2O, 0.2 mM DSS, 20 mM potassium phosphate, 95% H2O/5% D2O 95% H2O/5% D2O 1.0 mM [U-98% 13C; U-98% 15N] ITK-SH3, 100 % 99.98 D2O, 0.2 mM DSS, 20 mM potassium phosphate, 100% D2O 100% D2O Guntert, Mumenthaler and Wuthrich structure solution CYANA 3.0 Guntert, Mumenthaler and Wuthrich refinement CYANA 3.0 T. D. Goddard and D. G. Kneller, chemical shift assignment Sparky 3.114 Fred Damberger chemical shift assignment CARA 1.0 Fred Damberger peak picking CARA 1.0 Cornilescu, Delaglio and Bax data analysis TALOS + Bruker Biospin collection TopSpin 2.1p4 600 Bruker AVANCE II Bruker Avance II GLY 1 n 1 GLY 1 A PRO 2 n 2 PRO 2 A LEU 3 n 3 LEU 3 A GLY 4 n 4 GLY 4 A SER 5 n 5 SER 5 A PRO 6 n 6 PRO 6 A GLU 7 n 7 GLU 7 A GLU 8 n 8 GLU 8 A THR 9 n 9 THR 9 A VAL 10 n 10 VAL 10 A VAL 11 n 11 VAL 11 A ILE 12 n 12 ILE 12 A ALA 13 n 13 ALA 13 A LEU 14 n 14 LEU 14 A TYR 15 n 15 TYR 15 A ASP 16 n 16 ASP 16 A TYR 17 n 17 TYR 17 A GLN 18 n 18 GLN 18 A THR 19 n 19 THR 19 A ASN 20 n 20 ASN 20 A ASP 21 n 21 ASP 21 A PRO 22 n 22 PRO 22 A GLN 23 n 23 GLN 23 A GLU 24 n 24 GLU 24 A LEU 25 n 25 LEU 25 A ALA 26 n 26 ALA 26 A LEU 27 n 27 LEU 27 A ARG 28 n 28 ARG 28 A ARG 29 n 29 ARG 29 A ASN 30 n 30 ASN 30 A GLU 31 n 31 GLU 31 A GLU 32 n 32 GLU 32 A TYR 33 n 33 TYR 33 A CYS 34 n 34 CYS 34 A LEU 35 n 35 LEU 35 A LEU 36 n 36 LEU 36 A ASP 37 n 37 ASP 37 A SER 38 n 38 SER 38 A SER 39 n 39 SER 39 A GLU 40 n 40 GLU 40 A ILE 41 n 41 ILE 41 A HIS 42 n 42 HIS 42 A TRP 43 n 43 TRP 43 A TRP 44 n 44 TRP 44 A ARG 45 n 45 ARG 45 A VAL 46 n 46 VAL 46 A GLN 47 n 47 GLN 47 A ASP 48 n 48 ASP 48 A ARG 49 n 49 ARG 49 A ASN 50 n 50 ASN 50 A GLY 51 n 51 GLY 51 A HIS 52 n 52 HIS 52 A GLU 53 n 53 GLU 53 A GLY 54 n 54 GLY 54 A TYR 55 n 55 TYR 55 A VAL 56 n 56 VAL 56 A PRO 57 n 57 PRO 57 A SER 58 n 58 SER 58 A SER 59 n 59 SER 59 A TYR 60 n 60 TYR 60 A LEU 61 n 61 LEU 61 A VAL 62 n 62 VAL 62 A GLU 63 n 63 GLU 63 A LYS 64 n 64 LYS 64 A SER 65 n 65 SER 65 A PRO 66 n 66 PRO 66 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O GLY 54 A O GLY 54 A N VAL 46 A N VAL 46 A O ARG 45 A O ARG 45 A N LEU 36 A N LEU 36 A O TYR 33 A O TYR 33 A N VAL 11 A N VAL 11 A N ILE 12 A N ILE 12 A O VAL 62 A O VAL 62 1 A GLU 8 -96.98 31.97 2 A ASP 16 -66.20 98.50 3 A PRO 6 -69.81 77.62 3 A ASP 16 -66.31 94.07 3 A SER 65 59.75 73.29 4 A PRO 2 -69.85 92.94 4 A GLU 8 -99.92 54.30 4 A ASP 16 -68.38 89.77 5 A PRO 6 -69.78 78.40 5 A ASP 16 -69.85 93.91 6 A PRO 6 -69.81 78.28 6 A ASP 16 -65.65 94.26 7 A ASP 16 -66.82 89.77 7 A LYS 64 -69.69 92.31 8 A ASP 16 -68.30 99.95 9 A PRO 6 -69.74 78.31 9 A LYS 64 -69.04 98.40 10 A PRO 2 -69.79 -177.90 11 A LEU 3 53.59 77.26 11 A PRO 6 -69.71 78.19 11 A ASP 16 -68.67 92.44 12 A PRO 6 -69.74 77.70 12 A ASP 48 -79.61 -169.94 13 A SER 65 -155.07 69.40 14 A PRO 6 -69.75 62.77 14 A ASP 16 -68.92 85.81 15 A PRO 6 -69.79 62.72 16 A ASP 16 -66.99 89.65 16 A LEU 36 -121.33 -50.04 17 A PRO 6 -69.74 78.41 17 A LEU 36 -120.75 -50.01 17 A SER 65 -167.34 70.97 18 A PRO 6 -69.81 79.18 18 A ASP 16 -69.36 87.37 19 A GLU 8 -99.59 42.38 20 A GLU 8 -106.00 40.14 20 A ASP 16 -67.98 88.00 N lowest energy, model 1 Itk-sh3 1 N N A PRO 57 A PRO 57 HELX_P A SER 59 A SER 59 5 1 3 TRANSFERASE TRANSFERASE ITK_HUMAN UNP 1 171 Q08881 PEETVVIALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDRNGHEGYVPSSYLVEKSP 171 231 2LMJ 6 66 Q08881 A 1 6 66 1 expression tag GLY 1 2LMJ A Q08881 UNP 1 1 expression tag PRO 2 2LMJ A Q08881 UNP 2 1 expression tag LEU 3 2LMJ A Q08881 UNP 3 1 expression tag GLY 4 2LMJ A Q08881 UNP 4 1 expression tag SER 5 2LMJ A Q08881 UNP 5 5 anti-parallel anti-parallel anti-parallel anti-parallel A GLU 53 A GLU 53 A VAL 56 A VAL 56 A TRP 43 A TRP 43 A GLN 47 A GLN 47 A GLU 32 A GLU 32 A GLU 40 A GLU 40 A VAL 10 A VAL 10 A ALA 13 A ALA 13 A LEU 61 A LEU 61 A GLU 63 A GLU 63