1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Serrano, P.
Dutta, S.K.
Geralt, M.
Wuthrich, K.
Joint Center for Structural Genomics (JCSG)
Partnership for T-Cell Biology (TCELL)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be Published
0353
NMR structure of the RNA binding motif 39 (RBM39) from Mus musculus
10.2210/pdb2lq5/pdb
pdb_00002lq5
12516.202
RNA-binding protein 39
RRM 3 domain residues 418-530
1
man
polymer
Coactivator of activating protein 1 and estrogen receptors, Coactivator of AP-1 and ERs, RNA-binding motif protein 39, RNA-binding region-containing protein 2, Transcription coactivator CAPER
no
no
VQPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFA
GKMITAAYVPLPTYHNLFPDSMTATQLLVPSRR
VQPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFA
GKMITAAYVPLPTYHNLFPDSMTATQLLVPSRR
A
JCSG-421759
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
mouse
sample
Rbm39, Caper, Rnpc2
10090
Mus musculus
469008
Escherichia coli
BL21 DE3
pSpeedET
Joint Center for Structural Genomics
JCSG
PSI:Biology
Partnership for T-Cell Biology
TCELL
PSI:Biology
database_2
pdbx_database_status
pdbx_nmr_software
pdbx_nmr_spectrometer
repository
Initial release
Database references
Structure summary
Data collection
Database references
Other
1
0
2012-03-07
1
1
2015-10-21
1
2
2023-06-14
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_nmr_data
_pdbx_nmr_software.name
_pdbx_nmr_spectrometer.model
Y
BMRB
Y
RCSB
2012-02-23
REL
REL
REL
REL
target function
80
20
2D 1H-15N HSQC
3D 1H-13C NOESY aliphatic
3D 1H-15N NOESY
3D 1H-13C NOESY aromatic
4D APSY HACANH
5D APSY CBCACONH
5D APSY HACACONH
2D 1H-13C HSQC
1.2
mM
[U-95% 13C; U-95% 15N]
4.5
mM
50
mM
25
mM
0.083
6.0
ambient
298
K
molecular dynamics
1
lowest energy
1.2 mM [U-95% 13C; U-95% 15N] protein, 4.5 mM sodium azide, 50 mM sodium chloride, 25 mM sodium phosphate, 95% H2O/5% D2O
95% H2O/5% D2O
Keller and Wuthrich
chemical shift assignment
CARA
Keller and Wuthrich
data analysis
CARA
Luginbuhl, Guntert, Billeter and Wuthrich
refinement
OPALp
Guntert, Mumenthaler and Wuthrich
structure solution
CYANA
Bruker Biospin
data analysis
TopSpin
Bruker Biospin
collection
TopSpin
Bruker Biospin
processing
TopSpin
Unio Herrmann Wuthrich
chemical shift assignment
UNIO
Unio Herrmann Wuthrich
structure solution
UNIO
600
Bruker
AVANCE
Bruker Avance
800
Bruker
AVANCE
Bruker Avance
VAL
1
n
1
VAL
1
A
GLN
2
n
2
GLN
2
A
PRO
3
n
3
PRO
3
A
LEU
4
n
4
LEU
4
A
ALA
5
n
5
ALA
5
A
THR
6
n
6
THR
6
A
GLN
7
n
7
GLN
7
A
CYS
8
n
8
CYS
8
A
PHE
9
n
9
PHE
9
A
GLN
10
n
10
GLN
10
A
LEU
11
n
11
LEU
11
A
SER
12
n
12
SER
12
A
ASN
13
n
13
ASN
13
A
MET
14
n
14
MET
14
A
PHE
15
n
15
PHE
15
A
ASN
16
n
16
ASN
16
A
PRO
17
n
17
PRO
17
A
GLN
18
n
18
GLN
18
A
THR
19
n
19
THR
19
A
GLU
20
n
20
GLU
20
A
GLU
21
n
21
GLU
21
A
GLU
22
n
22
GLU
22
A
VAL
23
n
23
VAL
23
A
GLY
24
n
24
GLY
24
A
TRP
25
n
25
TRP
25
A
ASP
26
n
26
ASP
26
A
THR
27
n
27
THR
27
A
GLU
28
n
28
GLU
28
A
ILE
29
n
29
ILE
29
A
LYS
30
n
30
LYS
30
A
ASP
31
n
31
ASP
31
A
ASP
32
n
32
ASP
32
A
VAL
33
n
33
VAL
33
A
ILE
34
n
34
ILE
34
A
GLU
35
n
35
GLU
35
A
GLU
36
n
36
GLU
36
A
CYS
37
n
37
CYS
37
A
ASN
38
n
38
ASN
38
A
LYS
39
n
39
LYS
39
A
HIS
40
n
40
HIS
40
A
GLY
41
n
41
GLY
41
A
GLY
42
n
42
GLY
42
A
VAL
43
n
43
VAL
43
A
ILE
44
n
44
ILE
44
A
HIS
45
n
45
HIS
45
A
ILE
46
n
46
ILE
46
A
TYR
47
n
47
TYR
47
A
VAL
48
n
48
VAL
48
A
ASP
49
n
49
ASP
49
A
LYS
50
n
50
LYS
50
A
ASN
51
n
51
ASN
51
A
SER
52
n
52
SER
52
A
ALA
53
n
53
ALA
53
A
GLN
54
n
54
GLN
54
A
GLY
55
n
55
GLY
55
A
ASN
56
n
56
ASN
56
A
VAL
57
n
57
VAL
57
A
TYR
58
n
58
TYR
58
A
VAL
59
n
59
VAL
59
A
LYS
60
n
60
LYS
60
A
CYS
61
n
61
CYS
61
A
PRO
62
n
62
PRO
62
A
SER
63
n
63
SER
63
A
ILE
64
n
64
ILE
64
A
ALA
65
n
65
ALA
65
A
ALA
66
n
66
ALA
66
A
ALA
67
n
67
ALA
67
A
ILE
68
n
68
ILE
68
A
ALA
69
n
69
ALA
69
A
ALA
70
n
70
ALA
70
A
VAL
71
n
71
VAL
71
A
ASN
72
n
72
ASN
72
A
ALA
73
n
73
ALA
73
A
LEU
74
n
74
LEU
74
A
HIS
75
n
75
HIS
75
A
GLY
76
n
76
GLY
76
A
ARG
77
n
77
ARG
77
A
TRP
78
n
78
TRP
78
A
PHE
79
n
79
PHE
79
A
ALA
80
n
80
ALA
80
A
GLY
81
n
81
GLY
81
A
LYS
82
n
82
LYS
82
A
MET
83
n
83
MET
83
A
ILE
84
n
84
ILE
84
A
THR
85
n
85
THR
85
A
ALA
86
n
86
ALA
86
A
ALA
87
n
87
ALA
87
A
TYR
88
n
88
TYR
88
A
VAL
89
n
89
VAL
89
A
PRO
90
n
90
PRO
90
A
LEU
91
n
91
LEU
91
A
PRO
92
n
92
PRO
92
A
THR
93
n
93
THR
93
A
TYR
94
n
94
TYR
94
A
HIS
95
n
95
HIS
95
A
ASN
96
n
96
ASN
96
A
LEU
97
n
97
LEU
97
A
PHE
98
n
98
PHE
98
A
PRO
99
n
99
PRO
99
A
ASP
100
n
100
ASP
100
A
SER
101
n
101
SER
101
A
MET
102
n
102
MET
102
A
THR
103
n
103
THR
103
A
ALA
104
n
104
ALA
104
A
THR
105
n
105
THR
105
A
GLN
106
n
106
GLN
106
A
LEU
107
n
107
LEU
107
A
LEU
108
n
108
LEU
108
A
VAL
109
n
109
VAL
109
A
PRO
110
n
110
PRO
110
A
SER
111
n
111
SER
111
A
ARG
112
n
112
ARG
112
A
ARG
113
n
113
ARG
113
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
TYR
47
A
N
TYR
47
A
O
TYR
58
A
O
TYR
58
A
O
VAL
59
A
O
VAL
59
A
N
PHE
9
A
N
PHE
9
A
N
GLN
10
A
N
GLN
10
A
O
ALA
87
A
O
ALA
87
A
N
PHE
79
A
N
PHE
79
A
O
LYS
82
A
O
LYS
82
1
A
ARG
112
0.080
SIDE CHAIN
2
A
TYR
88
0.072
SIDE CHAIN
5
A
TYR
88
0.076
SIDE CHAIN
6
A
TYR
58
0.068
SIDE CHAIN
7
A
PHE
9
0.084
SIDE CHAIN
7
A
ARG
112
0.078
SIDE CHAIN
8
A
ARG
113
0.087
SIDE CHAIN
9
A
TYR
88
0.081
SIDE CHAIN
9
A
TYR
94
0.068
SIDE CHAIN
9
A
ARG
112
0.103
SIDE CHAIN
11
A
TYR
94
0.116
SIDE CHAIN
12
A
TYR
94
0.065
SIDE CHAIN
13
A
ARG
77
0.087
SIDE CHAIN
13
A
ARG
113
0.132
SIDE CHAIN
14
A
ARG
77
0.078
SIDE CHAIN
16
A
TYR
94
0.084
SIDE CHAIN
16
A
ARG
112
0.087
SIDE CHAIN
18
A
ARG
112
0.080
SIDE CHAIN
19
A
TYR
88
0.091
SIDE CHAIN
19
A
ARG
112
0.151
SIDE CHAIN
20
A
HIS
95
0.092
SIDE CHAIN
20
A
ARG
113
0.138
SIDE CHAIN
1
A
SER
12
-150.08
35.22
1
A
ASN
13
178.00
82.10
1
A
MET
14
-140.85
-11.00
1
A
GLU
21
-149.72
17.42
1
A
HIS
40
-99.09
-66.90
1
A
ASN
51
-117.14
57.82
1
A
ALA
80
-66.03
85.09
1
A
PHE
98
-117.66
70.80
1
A
ALA
104
-45.26
94.29
1
A
ARG
112
-174.23
123.81
2
A
LEU
4
-149.29
34.28
2
A
SER
12
-147.38
59.49
2
A
ASN
13
-179.10
4.57
2
A
GLU
21
-148.01
16.20
2
A
ARG
112
-166.91
119.79
3
A
SER
12
-150.16
33.68
3
A
ASN
13
-158.19
-0.09
3
A
GLU
20
-68.21
11.91
3
A
LEU
74
-124.45
-56.25
3
A
ALA
80
-66.85
81.27
3
A
SER
101
-68.95
8.73
3
A
ALA
104
-57.48
106.06
3
A
ARG
112
-160.66
113.25
4
A
SER
12
-153.72
68.73
4
A
ASN
13
178.20
7.02
4
A
GLU
20
-159.50
34.50
4
A
HIS
45
-166.31
118.63
5
A
PRO
3
-65.21
82.33
5
A
SER
12
-157.16
49.72
5
A
ASN
13
-165.37
-5.94
5
A
THR
19
-112.95
56.83
5
A
GLU
20
-154.29
87.37
5
A
TRP
25
-66.49
3.85
5
A
HIS
40
-120.19
-65.96
5
A
ALA
80
-57.00
-6.54
5
A
ARG
112
-173.97
122.02
6
A
LEU
4
-153.72
33.38
6
A
SER
12
-158.10
63.00
6
A
ASN
13
178.48
12.21
6
A
GLU
21
-156.96
13.35
6
A
HIS
45
-170.80
137.60
6
A
GLN
54
-145.33
40.77
6
A
PHE
79
-64.21
-178.80
6
A
ALA
80
-67.64
27.95
6
A
PHE
98
-117.82
72.31
6
A
ALA
104
-66.52
96.61
7
A
SER
12
-150.11
39.75
7
A
ASN
13
-169.82
9.63
7
A
VAL
23
-67.91
82.41
7
A
TRP
25
-66.60
0.04
7
A
TYR
47
-161.98
108.78
7
A
LYS
50
-58.79
-6.89
7
A
PHE
79
-69.15
-164.44
7
A
ALA
80
-69.72
47.67
7
A
LYS
82
176.15
144.25
7
A
ARG
112
-170.72
116.04
8
A
GLN
2
-168.40
86.02
8
A
PRO
3
-67.09
82.17
8
A
SER
12
-149.10
35.30
8
A
ASN
13
-176.19
72.72
8
A
THR
19
-146.93
44.30
8
A
GLU
21
-144.31
18.37
8
A
TYR
47
-163.58
112.40
8
A
GLN
54
-116.39
54.02
8
A
SER
101
-68.57
9.19
8
A
ARG
112
-146.52
14.04
9
A
LEU
4
-151.77
33.90
9
A
ASN
13
-172.34
1.25
9
A
TRP
25
-57.68
-9.94
9
A
GLU
28
-98.53
-64.48
9
A
PHE
79
-66.65
-173.80
9
A
ALA
80
-63.14
0.41
10
A
PRO
3
-66.43
77.82
10
A
SER
12
-150.71
42.73
10
A
ASN
13
-166.85
10.96
10
A
THR
19
-141.32
51.15
10
A
GLU
21
-150.36
20.62
10
A
TRP
25
-61.02
4.12
10
A
HIS
40
-130.72
-52.71
10
A
ASN
51
-79.92
34.77
10
A
ARG
112
-163.85
111.11
11
A
GLN
2
-154.95
73.18
11
A
SER
12
-150.54
28.80
11
A
ASN
13
-164.20
31.50
11
A
GLU
21
-78.87
-163.70
11
A
GLU
22
-72.83
-165.36
11
A
VAL
23
-49.51
94.64
11
A
TRP
25
-57.80
-5.09
11
A
ALA
80
-63.15
82.62
11
A
ARG
112
-176.41
92.04
12
A
SER
12
-157.06
61.88
12
A
ASN
13
-176.06
8.24
12
A
GLU
20
-173.89
141.03
12
A
GLU
21
-168.57
33.53
12
A
VAL
23
-113.31
72.44
12
A
TRP
25
-64.02
2.77
12
A
SER
52
-59.30
178.58
12
A
SER
111
-138.79
-35.79
12
A
ARG
112
-177.35
125.01
13
A
GLN
2
-153.70
74.71
13
A
LEU
4
-155.79
32.21
13
A
SER
12
-146.49
39.81
13
A
ASN
13
-159.72
-4.31
13
A
THR
19
-142.86
57.50
13
A
GLU
21
-164.61
29.01
13
A
HIS
40
-94.13
-74.68
13
A
ALA
80
-61.03
87.28
13
A
ALA
87
-157.49
20.26
13
A
TYR
88
49.99
-179.02
13
A
ARG
112
-177.10
99.64
14
A
PRO
3
-69.16
88.08
14
A
SER
12
-150.25
52.84
14
A
ASN
13
172.73
81.08
14
A
VAL
23
-68.05
75.72
14
A
ASN
51
-91.22
40.86
14
A
GLN
54
-142.15
43.57
15
A
SER
12
-160.37
36.08
15
A
ASN
13
-171.22
22.46
15
A
GLU
21
-77.81
-165.96
15
A
TRP
25
-59.66
-5.44
15
A
TYR
47
-161.18
96.22
15
A
ASN
51
-69.17
9.90
15
A
ALA
80
-62.26
6.11
15
A
ARG
112
-161.97
109.65
16
A
ALA
5
-68.97
81.74
16
A
SER
12
-156.50
53.03
16
A
ASN
13
-177.69
23.08
16
A
GLU
21
-148.21
17.60
16
A
HIS
45
-174.56
145.01
16
A
ALA
80
-62.87
5.07
16
A
THR
103
-142.22
33.31
16
A
ALA
104
-63.47
98.75
16
A
ARG
112
-171.44
110.72
17
A
GLN
7
-73.04
21.00
17
A
SER
12
-154.60
35.87
17
A
ASN
13
-168.05
27.86
17
A
GLU
21
-123.05
-164.16
17
A
HIS
40
-129.95
-61.17
17
A
SER
52
-68.07
4.55
17
A
ALA
53
65.78
-36.12
17
A
PHE
79
-114.16
-169.63
17
A
ALA
80
-63.59
75.06
17
A
SER
111
-123.76
-58.01
17
A
ARG
112
-160.97
117.48
18
A
LEU
4
-67.56
37.30
18
A
ALA
5
-140.02
58.24
18
A
SER
12
-143.62
21.16
18
A
ASN
13
-169.16
70.14
18
A
THR
19
-105.36
41.63
18
A
TYR
47
-166.23
97.68
18
A
SER
52
-67.07
-179.08
18
A
GLN
54
-118.00
56.42
18
A
ALA
80
-48.63
-7.21
18
A
ALA
104
-65.03
98.52
18
A
ARG
112
-171.16
112.04
19
A
LEU
4
-151.23
34.91
19
A
GLN
7
-77.80
29.16
19
A
SER
12
-156.52
48.04
19
A
ASN
13
-168.94
22.49
19
A
THR
19
-149.73
48.94
19
A
TRP
25
-57.80
2.00
19
A
GLU
28
-70.04
-73.05
19
A
VAL
48
-58.67
108.70
19
A
ASN
51
-69.39
1.77
19
A
PHE
79
-64.70
-171.21
19
A
ALA
80
-62.07
83.69
19
A
ARG
112
174.79
125.40
20
A
GLN
2
-154.71
86.12
20
A
SER
12
-153.99
49.16
20
A
ASN
13
174.62
71.10
20
A
TRP
25
-55.91
15.79
20
A
VAL
43
-165.79
108.74
20
A
TYR
47
-161.54
101.48
20
A
ARG
112
174.87
103.77
lowest energy, model 1
NMR structure of the RNA binding motif 39 (RBM39) from Mus musculus
1
N
N
A
TRP
25
A
TRP
25
HELX_P
A
GLY
41
A
GLY
41
1
1
17
A
SER
63
A
SER
63
HELX_P
A
HIS
75
A
HIS
75
1
2
13
A
PRO
90
A
PRO
90
HELX_P
A
PHE
98
A
PHE
98
1
3
9
RNA BINDING PROTEIN
RNA binding domain, RNA BINDING PROTEIN, Structural Genomics, PSI-Biology, Joint Center for Structural Genomics, JCSG, Partnership for T-Cell Biology, TCELL
RBM39_MOUSE
UNP
1
418
Q8VH51
VQPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFA
GKMITAAYVPLPTYHNLFPDSMTATQLLVPSRR
418
530
2LQ5
1
113
Q8VH51
A
1
1
113
4
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
HIS
45
A
HIS
45
A
TYR
47
A
TYR
47
A
TYR
58
A
TYR
58
A
LYS
60
A
LYS
60
A
CYS
8
A
CYS
8
A
LEU
11
A
LEU
11
A
ALA
86
A
ALA
86
A
TYR
88
A
TYR
88
A
TRP
78
A
TRP
78
A
PHE
79
A
PHE
79
A
LYS
82
A
LYS
82
A
MET
83
A
MET
83