1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Serrano, P. Dutta, S.K. Geralt, M. Wuthrich, K. Joint Center for Structural Genomics (JCSG) Partnership for T-Cell Biology (TCELL) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking To be Published 0353 NMR structure of the RNA binding motif 39 (RBM39) from Mus musculus 10.2210/pdb2lq5/pdb pdb_00002lq5 12516.202 RNA-binding protein 39 RRM 3 domain residues 418-530 1 man polymer Coactivator of activating protein 1 and estrogen receptors, Coactivator of AP-1 and ERs, RNA-binding motif protein 39, RNA-binding region-containing protein 2, Transcription coactivator CAPER no no VQPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFA GKMITAAYVPLPTYHNLFPDSMTATQLLVPSRR VQPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFA GKMITAAYVPLPTYHNLFPDSMTATQLLVPSRR A JCSG-421759 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n mouse sample Rbm39, Caper, Rnpc2 10090 Mus musculus 469008 Escherichia coli BL21 DE3 pSpeedET Joint Center for Structural Genomics JCSG PSI:Biology Partnership for T-Cell Biology TCELL PSI:Biology database_2 pdbx_database_status pdbx_nmr_software pdbx_nmr_spectrometer repository Initial release Database references Structure summary Data collection Database references Other 1 0 2012-03-07 1 1 2015-10-21 1 2 2023-06-14 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.status_code_nmr_data _pdbx_nmr_software.name _pdbx_nmr_spectrometer.model Y BMRB Y RCSB 2012-02-23 REL REL REL REL target function 80 20 2D 1H-15N HSQC 3D 1H-13C NOESY aliphatic 3D 1H-15N NOESY 3D 1H-13C NOESY aromatic 4D APSY HACANH 5D APSY CBCACONH 5D APSY HACACONH 2D 1H-13C HSQC 1.2 mM [U-95% 13C; U-95% 15N] 4.5 mM 50 mM 25 mM 0.083 6.0 ambient 298 K molecular dynamics 1 lowest energy 1.2 mM [U-95% 13C; U-95% 15N] protein, 4.5 mM sodium azide, 50 mM sodium chloride, 25 mM sodium phosphate, 95% H2O/5% D2O 95% H2O/5% D2O Keller and Wuthrich chemical shift assignment CARA Keller and Wuthrich data analysis CARA Luginbuhl, Guntert, Billeter and Wuthrich refinement OPALp Guntert, Mumenthaler and Wuthrich structure solution CYANA Bruker Biospin data analysis TopSpin Bruker Biospin collection TopSpin Bruker Biospin processing TopSpin Unio Herrmann Wuthrich chemical shift assignment UNIO Unio Herrmann Wuthrich structure solution UNIO 600 Bruker AVANCE Bruker Avance 800 Bruker AVANCE Bruker Avance VAL 1 n 1 VAL 1 A GLN 2 n 2 GLN 2 A PRO 3 n 3 PRO 3 A LEU 4 n 4 LEU 4 A ALA 5 n 5 ALA 5 A THR 6 n 6 THR 6 A GLN 7 n 7 GLN 7 A CYS 8 n 8 CYS 8 A PHE 9 n 9 PHE 9 A GLN 10 n 10 GLN 10 A LEU 11 n 11 LEU 11 A SER 12 n 12 SER 12 A ASN 13 n 13 ASN 13 A MET 14 n 14 MET 14 A PHE 15 n 15 PHE 15 A ASN 16 n 16 ASN 16 A PRO 17 n 17 PRO 17 A GLN 18 n 18 GLN 18 A THR 19 n 19 THR 19 A GLU 20 n 20 GLU 20 A GLU 21 n 21 GLU 21 A GLU 22 n 22 GLU 22 A VAL 23 n 23 VAL 23 A GLY 24 n 24 GLY 24 A TRP 25 n 25 TRP 25 A ASP 26 n 26 ASP 26 A THR 27 n 27 THR 27 A GLU 28 n 28 GLU 28 A ILE 29 n 29 ILE 29 A LYS 30 n 30 LYS 30 A ASP 31 n 31 ASP 31 A ASP 32 n 32 ASP 32 A VAL 33 n 33 VAL 33 A ILE 34 n 34 ILE 34 A GLU 35 n 35 GLU 35 A GLU 36 n 36 GLU 36 A CYS 37 n 37 CYS 37 A ASN 38 n 38 ASN 38 A LYS 39 n 39 LYS 39 A HIS 40 n 40 HIS 40 A GLY 41 n 41 GLY 41 A GLY 42 n 42 GLY 42 A VAL 43 n 43 VAL 43 A ILE 44 n 44 ILE 44 A HIS 45 n 45 HIS 45 A ILE 46 n 46 ILE 46 A TYR 47 n 47 TYR 47 A VAL 48 n 48 VAL 48 A ASP 49 n 49 ASP 49 A LYS 50 n 50 LYS 50 A ASN 51 n 51 ASN 51 A SER 52 n 52 SER 52 A ALA 53 n 53 ALA 53 A GLN 54 n 54 GLN 54 A GLY 55 n 55 GLY 55 A ASN 56 n 56 ASN 56 A VAL 57 n 57 VAL 57 A TYR 58 n 58 TYR 58 A VAL 59 n 59 VAL 59 A LYS 60 n 60 LYS 60 A CYS 61 n 61 CYS 61 A PRO 62 n 62 PRO 62 A SER 63 n 63 SER 63 A ILE 64 n 64 ILE 64 A ALA 65 n 65 ALA 65 A ALA 66 n 66 ALA 66 A ALA 67 n 67 ALA 67 A ILE 68 n 68 ILE 68 A ALA 69 n 69 ALA 69 A ALA 70 n 70 ALA 70 A VAL 71 n 71 VAL 71 A ASN 72 n 72 ASN 72 A ALA 73 n 73 ALA 73 A LEU 74 n 74 LEU 74 A HIS 75 n 75 HIS 75 A GLY 76 n 76 GLY 76 A ARG 77 n 77 ARG 77 A TRP 78 n 78 TRP 78 A PHE 79 n 79 PHE 79 A ALA 80 n 80 ALA 80 A GLY 81 n 81 GLY 81 A LYS 82 n 82 LYS 82 A MET 83 n 83 MET 83 A ILE 84 n 84 ILE 84 A THR 85 n 85 THR 85 A ALA 86 n 86 ALA 86 A ALA 87 n 87 ALA 87 A TYR 88 n 88 TYR 88 A VAL 89 n 89 VAL 89 A PRO 90 n 90 PRO 90 A LEU 91 n 91 LEU 91 A PRO 92 n 92 PRO 92 A THR 93 n 93 THR 93 A TYR 94 n 94 TYR 94 A HIS 95 n 95 HIS 95 A ASN 96 n 96 ASN 96 A LEU 97 n 97 LEU 97 A PHE 98 n 98 PHE 98 A PRO 99 n 99 PRO 99 A ASP 100 n 100 ASP 100 A SER 101 n 101 SER 101 A MET 102 n 102 MET 102 A THR 103 n 103 THR 103 A ALA 104 n 104 ALA 104 A THR 105 n 105 THR 105 A GLN 106 n 106 GLN 106 A LEU 107 n 107 LEU 107 A LEU 108 n 108 LEU 108 A VAL 109 n 109 VAL 109 A PRO 110 n 110 PRO 110 A SER 111 n 111 SER 111 A ARG 112 n 112 ARG 112 A ARG 113 n 113 ARG 113 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N TYR 47 A N TYR 47 A O TYR 58 A O TYR 58 A O VAL 59 A O VAL 59 A N PHE 9 A N PHE 9 A N GLN 10 A N GLN 10 A O ALA 87 A O ALA 87 A N PHE 79 A N PHE 79 A O LYS 82 A O LYS 82 1 A ARG 112 0.080 SIDE CHAIN 2 A TYR 88 0.072 SIDE CHAIN 5 A TYR 88 0.076 SIDE CHAIN 6 A TYR 58 0.068 SIDE CHAIN 7 A PHE 9 0.084 SIDE CHAIN 7 A ARG 112 0.078 SIDE CHAIN 8 A ARG 113 0.087 SIDE CHAIN 9 A TYR 88 0.081 SIDE CHAIN 9 A TYR 94 0.068 SIDE CHAIN 9 A ARG 112 0.103 SIDE CHAIN 11 A TYR 94 0.116 SIDE CHAIN 12 A TYR 94 0.065 SIDE CHAIN 13 A ARG 77 0.087 SIDE CHAIN 13 A ARG 113 0.132 SIDE CHAIN 14 A ARG 77 0.078 SIDE CHAIN 16 A TYR 94 0.084 SIDE CHAIN 16 A ARG 112 0.087 SIDE CHAIN 18 A ARG 112 0.080 SIDE CHAIN 19 A TYR 88 0.091 SIDE CHAIN 19 A ARG 112 0.151 SIDE CHAIN 20 A HIS 95 0.092 SIDE CHAIN 20 A ARG 113 0.138 SIDE CHAIN 1 A SER 12 -150.08 35.22 1 A ASN 13 178.00 82.10 1 A MET 14 -140.85 -11.00 1 A GLU 21 -149.72 17.42 1 A HIS 40 -99.09 -66.90 1 A ASN 51 -117.14 57.82 1 A ALA 80 -66.03 85.09 1 A PHE 98 -117.66 70.80 1 A ALA 104 -45.26 94.29 1 A ARG 112 -174.23 123.81 2 A LEU 4 -149.29 34.28 2 A SER 12 -147.38 59.49 2 A ASN 13 -179.10 4.57 2 A GLU 21 -148.01 16.20 2 A ARG 112 -166.91 119.79 3 A SER 12 -150.16 33.68 3 A ASN 13 -158.19 -0.09 3 A GLU 20 -68.21 11.91 3 A LEU 74 -124.45 -56.25 3 A ALA 80 -66.85 81.27 3 A SER 101 -68.95 8.73 3 A ALA 104 -57.48 106.06 3 A ARG 112 -160.66 113.25 4 A SER 12 -153.72 68.73 4 A ASN 13 178.20 7.02 4 A GLU 20 -159.50 34.50 4 A HIS 45 -166.31 118.63 5 A PRO 3 -65.21 82.33 5 A SER 12 -157.16 49.72 5 A ASN 13 -165.37 -5.94 5 A THR 19 -112.95 56.83 5 A GLU 20 -154.29 87.37 5 A TRP 25 -66.49 3.85 5 A HIS 40 -120.19 -65.96 5 A ALA 80 -57.00 -6.54 5 A ARG 112 -173.97 122.02 6 A LEU 4 -153.72 33.38 6 A SER 12 -158.10 63.00 6 A ASN 13 178.48 12.21 6 A GLU 21 -156.96 13.35 6 A HIS 45 -170.80 137.60 6 A GLN 54 -145.33 40.77 6 A PHE 79 -64.21 -178.80 6 A ALA 80 -67.64 27.95 6 A PHE 98 -117.82 72.31 6 A ALA 104 -66.52 96.61 7 A SER 12 -150.11 39.75 7 A ASN 13 -169.82 9.63 7 A VAL 23 -67.91 82.41 7 A TRP 25 -66.60 0.04 7 A TYR 47 -161.98 108.78 7 A LYS 50 -58.79 -6.89 7 A PHE 79 -69.15 -164.44 7 A ALA 80 -69.72 47.67 7 A LYS 82 176.15 144.25 7 A ARG 112 -170.72 116.04 8 A GLN 2 -168.40 86.02 8 A PRO 3 -67.09 82.17 8 A SER 12 -149.10 35.30 8 A ASN 13 -176.19 72.72 8 A THR 19 -146.93 44.30 8 A GLU 21 -144.31 18.37 8 A TYR 47 -163.58 112.40 8 A GLN 54 -116.39 54.02 8 A SER 101 -68.57 9.19 8 A ARG 112 -146.52 14.04 9 A LEU 4 -151.77 33.90 9 A ASN 13 -172.34 1.25 9 A TRP 25 -57.68 -9.94 9 A GLU 28 -98.53 -64.48 9 A PHE 79 -66.65 -173.80 9 A ALA 80 -63.14 0.41 10 A PRO 3 -66.43 77.82 10 A SER 12 -150.71 42.73 10 A ASN 13 -166.85 10.96 10 A THR 19 -141.32 51.15 10 A GLU 21 -150.36 20.62 10 A TRP 25 -61.02 4.12 10 A HIS 40 -130.72 -52.71 10 A ASN 51 -79.92 34.77 10 A ARG 112 -163.85 111.11 11 A GLN 2 -154.95 73.18 11 A SER 12 -150.54 28.80 11 A ASN 13 -164.20 31.50 11 A GLU 21 -78.87 -163.70 11 A GLU 22 -72.83 -165.36 11 A VAL 23 -49.51 94.64 11 A TRP 25 -57.80 -5.09 11 A ALA 80 -63.15 82.62 11 A ARG 112 -176.41 92.04 12 A SER 12 -157.06 61.88 12 A ASN 13 -176.06 8.24 12 A GLU 20 -173.89 141.03 12 A GLU 21 -168.57 33.53 12 A VAL 23 -113.31 72.44 12 A TRP 25 -64.02 2.77 12 A SER 52 -59.30 178.58 12 A SER 111 -138.79 -35.79 12 A ARG 112 -177.35 125.01 13 A GLN 2 -153.70 74.71 13 A LEU 4 -155.79 32.21 13 A SER 12 -146.49 39.81 13 A ASN 13 -159.72 -4.31 13 A THR 19 -142.86 57.50 13 A GLU 21 -164.61 29.01 13 A HIS 40 -94.13 -74.68 13 A ALA 80 -61.03 87.28 13 A ALA 87 -157.49 20.26 13 A TYR 88 49.99 -179.02 13 A ARG 112 -177.10 99.64 14 A PRO 3 -69.16 88.08 14 A SER 12 -150.25 52.84 14 A ASN 13 172.73 81.08 14 A VAL 23 -68.05 75.72 14 A ASN 51 -91.22 40.86 14 A GLN 54 -142.15 43.57 15 A SER 12 -160.37 36.08 15 A ASN 13 -171.22 22.46 15 A GLU 21 -77.81 -165.96 15 A TRP 25 -59.66 -5.44 15 A TYR 47 -161.18 96.22 15 A ASN 51 -69.17 9.90 15 A ALA 80 -62.26 6.11 15 A ARG 112 -161.97 109.65 16 A ALA 5 -68.97 81.74 16 A SER 12 -156.50 53.03 16 A ASN 13 -177.69 23.08 16 A GLU 21 -148.21 17.60 16 A HIS 45 -174.56 145.01 16 A ALA 80 -62.87 5.07 16 A THR 103 -142.22 33.31 16 A ALA 104 -63.47 98.75 16 A ARG 112 -171.44 110.72 17 A GLN 7 -73.04 21.00 17 A SER 12 -154.60 35.87 17 A ASN 13 -168.05 27.86 17 A GLU 21 -123.05 -164.16 17 A HIS 40 -129.95 -61.17 17 A SER 52 -68.07 4.55 17 A ALA 53 65.78 -36.12 17 A PHE 79 -114.16 -169.63 17 A ALA 80 -63.59 75.06 17 A SER 111 -123.76 -58.01 17 A ARG 112 -160.97 117.48 18 A LEU 4 -67.56 37.30 18 A ALA 5 -140.02 58.24 18 A SER 12 -143.62 21.16 18 A ASN 13 -169.16 70.14 18 A THR 19 -105.36 41.63 18 A TYR 47 -166.23 97.68 18 A SER 52 -67.07 -179.08 18 A GLN 54 -118.00 56.42 18 A ALA 80 -48.63 -7.21 18 A ALA 104 -65.03 98.52 18 A ARG 112 -171.16 112.04 19 A LEU 4 -151.23 34.91 19 A GLN 7 -77.80 29.16 19 A SER 12 -156.52 48.04 19 A ASN 13 -168.94 22.49 19 A THR 19 -149.73 48.94 19 A TRP 25 -57.80 2.00 19 A GLU 28 -70.04 -73.05 19 A VAL 48 -58.67 108.70 19 A ASN 51 -69.39 1.77 19 A PHE 79 -64.70 -171.21 19 A ALA 80 -62.07 83.69 19 A ARG 112 174.79 125.40 20 A GLN 2 -154.71 86.12 20 A SER 12 -153.99 49.16 20 A ASN 13 174.62 71.10 20 A TRP 25 -55.91 15.79 20 A VAL 43 -165.79 108.74 20 A TYR 47 -161.54 101.48 20 A ARG 112 174.87 103.77 lowest energy, model 1 NMR structure of the RNA binding motif 39 (RBM39) from Mus musculus 1 N N A TRP 25 A TRP 25 HELX_P A GLY 41 A GLY 41 1 1 17 A SER 63 A SER 63 HELX_P A HIS 75 A HIS 75 1 2 13 A PRO 90 A PRO 90 HELX_P A PHE 98 A PHE 98 1 3 9 RNA BINDING PROTEIN RNA binding domain, RNA BINDING PROTEIN, Structural Genomics, PSI-Biology, Joint Center for Structural Genomics, JCSG, Partnership for T-Cell Biology, TCELL RBM39_MOUSE UNP 1 418 Q8VH51 VQPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFA GKMITAAYVPLPTYHNLFPDSMTATQLLVPSRR 418 530 2LQ5 1 113 Q8VH51 A 1 1 113 4 2 anti-parallel anti-parallel anti-parallel anti-parallel A HIS 45 A HIS 45 A TYR 47 A TYR 47 A TYR 58 A TYR 58 A LYS 60 A LYS 60 A CYS 8 A CYS 8 A LEU 11 A LEU 11 A ALA 86 A ALA 86 A TYR 88 A TYR 88 A TRP 78 A TRP 78 A PHE 79 A PHE 79 A LYS 82 A LYS 82 A MET 83 A MET 83