1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Sikorsky, T.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C8 H18 N4 O2
202.254
n
NG,NG-DIMETHYL-L-ARGININE
ADMA
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
C
N
89
N
C
N
90
N
N
N
91
S
C
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
N
N
96
N
C
N
97
N
N
N
98
N
N
N
99
N
C
N
100
N
O
N
101
N
O
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
N
N
121
S
C
N
122
N
C
N
123
N
O
N
124
N
C
N
125
N
C
N
126
N
C
N
127
N
O
N
128
N
N
N
129
N
O
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
N
N
141
S
C
N
142
N
C
N
143
N
O
N
144
N
C
N
145
N
C
N
146
N
C
N
147
N
O
N
148
N
O
N
149
N
O
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
N
N
160
N
C
N
161
N
C
N
162
N
O
N
163
N
O
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
N
N
170
S
C
N
171
N
C
N
172
N
O
N
173
N
C
Y
174
N
C
Y
175
N
N
Y
176
N
C
Y
177
N
C
Y
178
N
N
N
179
N
O
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
N
N
191
S
C
N
192
N
C
N
193
N
O
N
194
S
C
N
195
N
C
N
196
N
C
N
197
N
C
N
198
N
O
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
N
N
213
S
C
N
214
N
C
N
215
N
O
N
216
N
C
N
217
N
C
N
218
N
C
N
219
N
C
N
220
N
O
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
N
N
235
S
C
N
236
N
C
N
237
N
O
N
238
N
C
N
239
N
C
N
240
N
C
N
241
N
C
N
242
N
N
N
243
N
O
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
N
N
260
S
C
N
261
N
C
N
262
N
O
N
263
N
C
N
264
N
C
N
265
N
S
N
266
N
C
N
267
N
O
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
N
N
280
S
C
N
281
N
C
N
282
N
O
N
283
N
C
Y
284
N
C
Y
285
N
C
Y
286
N
C
Y
287
N
C
Y
288
N
C
Y
289
N
C
N
290
N
O
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
N
N
303
S
C
N
304
N
C
N
305
N
O
N
306
N
C
N
307
N
C
N
308
N
C
N
309
N
O
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
N
N
320
S
C
N
321
N
C
N
322
N
O
N
323
N
C
N
324
N
O
N
325
N
O
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
N
N
334
S
C
N
335
N
C
N
336
N
O
N
337
R
C
N
338
N
O
N
339
N
C
N
340
N
O
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
N
N
351
S
C
N
352
N
C
N
353
N
O
N
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
N
Y
359
N
C
Y
360
N
C
Y
361
N
C
Y
362
N
C
Y
363
N
C
N
364
N
O
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
N
N
378
S
C
N
379
N
C
N
380
N
O
N
381
N
C
Y
382
N
C
Y
383
N
C
Y
384
N
C
Y
385
N
C
Y
386
N
C
Y
387
N
C
N
388
N
O
N
389
N
O
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
N
N
402
S
C
N
403
N
C
N
404
N
O
N
405
N
C
N
406
N
C
N
407
N
C
N
408
N
O
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
doub
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
doub
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
doub
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
doub
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
doub
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
doub
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
Y
171
N
sing
Y
172
N
doub
Y
173
N
doub
N
174
N
sing
Y
175
N
sing
N
176
N
sing
Y
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
doub
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
doub
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
doub
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
doub
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
Y
277
N
doub
Y
278
N
sing
Y
279
N
sing
N
280
N
sing
Y
281
N
doub
N
282
N
sing
Y
283
N
doub
N
284
N
sing
Y
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
doub
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
doub
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
doub
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
Y
346
N
doub
Y
347
N
sing
Y
348
N
sing
N
349
N
sing
Y
350
N
doub
Y
351
N
sing
Y
352
N
sing
N
353
N
sing
Y
354
N
sing
Y
355
N
doub
N
356
N
sing
Y
357
N
doub
N
358
N
sing
Y
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
doub
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
Y
374
N
doub
Y
375
N
sing
Y
376
N
sing
N
377
N
sing
Y
378
N
doub
N
379
N
sing
Y
380
N
doub
N
381
N
sing
Y
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
doub
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
UK
Nucleic Acids Res.
NARHAD
0389
0305-1048
40
11748
11755
10.1093/nar/gks929
23066109
Recognition of asymmetrically dimethylated arginine by TDRD3.
2012
10.2210/pdb2lto/pdb
pdb_00002lto
6827.806
Tudor domain-containing protein 3
Tudor domain residues 554-608
1
man
polymer
1494.605
DNA-directed RNA polymerase II subunit RPB1
2.7.7.6, 2.7.7.48
UNP residues 1804-1816
1
syn
polymer
RNA polymerase II subunit B1, DNA-directed RNA polymerase II subunit A, DNA-directed RNA polymerase III largest subunit, RNA-directed RNA polymerase II subunit RPB1
no
no
MKMWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKPILE
MKMWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKPILE
A
polypeptide(L)
no
yes
YSPSSP(DA2)YTPQSP
YSPSSPRYTPQSP
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
TDRD3
9606
Homo sapiens
562
Escherichia coli
pET22b
atom_site
chem_comp_atom
chem_comp_bond
database_2
entity_poly
pdbx_nmr_software
pdbx_nmr_spectrometer
struct_conn
struct_ref_seq_dif
repository
Initial release
Non-polymer description
Atomic model
Data collection
Database references
Derived calculations
Polymer sequence
1
0
2013-01-16
1
1
2016-06-15
2
0
2023-11-15
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.auth_atom_id
_atom_site.label_atom_id
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_entity_poly.pdbx_seq_one_letter_code_can
_pdbx_nmr_software.name
_pdbx_nmr_spectrometer.model
_struct_conn.pdbx_leaving_atom_flag
_struct_ref_seq_dif.details
BMRB
Y
RCSB
2012-05-30
REL
REL
REL
9606
human
Homo sapiens
sample
target function
20
20
2D 1H-15N HSQC
3D HBHA(CO)NH
3D HNCA
3D CBCA(CO)NH
3D 1H-13C NOESY aliphatic
3D 1H-13C NOESY aromatic
1.7
mM
[U-99% 13C; U-99% 15N]
50
mM
10
mM
150
mM
150
8
ambient
293.15
K
simulated annealing
1
lowest energy
1.7 mM [U-99% 13C; U-99% 15N] protein_1, 50 mM sodium phosphate, 10 mM beta-mercaptoethanol, 150 mM sodium chloride, 90% H2O/10% D2O
90% H2O/10% D2O
Goddard
chemical shift assignment
Sparky
Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, and Kollman
refinement
Amber
600
Bruker
AVANCE
Bruker Avance
MET
553
n
1
MET
553
A
LYS
554
n
2
LYS
554
A
MET
555
n
3
MET
555
A
TRP
556
n
4
TRP
556
A
LYS
557
n
5
LYS
557
A
PRO
558
n
6
PRO
558
A
GLY
559
n
7
GLY
559
A
ASP
560
n
8
ASP
560
A
GLU
561
n
9
GLU
561
A
CYS
562
n
10
CYS
562
A
PHE
563
n
11
PHE
563
A
ALA
564
n
12
ALA
564
A
LEU
565
n
13
LEU
565
A
TYR
566
n
14
TYR
566
A
TRP
567
n
15
TRP
567
A
GLU
568
n
16
GLU
568
A
ASP
569
n
17
ASP
569
A
ASN
570
n
18
ASN
570
A
LYS
571
n
19
LYS
571
A
PHE
572
n
20
PHE
572
A
TYR
573
n
21
TYR
573
A
ARG
574
n
22
ARG
574
A
ALA
575
n
23
ALA
575
A
GLU
576
n
24
GLU
576
A
VAL
577
n
25
VAL
577
A
GLU
578
n
26
GLU
578
A
ALA
579
n
27
ALA
579
A
LEU
580
n
28
LEU
580
A
HIS
581
n
29
HIS
581
A
SER
582
n
30
SER
582
A
SER
583
n
31
SER
583
A
GLY
584
n
32
GLY
584
A
MET
585
n
33
MET
585
A
THR
586
n
34
THR
586
A
ALA
587
n
35
ALA
587
A
VAL
588
n
36
VAL
588
A
VAL
589
n
37
VAL
589
A
LYS
590
n
38
LYS
590
A
PHE
591
n
39
PHE
591
A
ILE
592
n
40
ILE
592
A
ASP
593
n
41
ASP
593
A
TYR
594
n
42
TYR
594
A
GLY
595
n
43
GLY
595
A
ASN
596
n
44
ASN
596
A
TYR
597
n
45
TYR
597
A
GLU
598
n
46
GLU
598
A
GLU
599
n
47
GLU
599
A
VAL
600
n
48
VAL
600
A
LEU
601
n
49
LEU
601
A
LEU
602
n
50
LEU
602
A
SER
603
n
51
SER
603
A
ASN
604
n
52
ASN
604
A
ILE
605
n
53
ILE
605
A
LYS
606
n
54
LYS
606
A
PRO
607
n
55
PRO
607
A
ILE
608
n
56
ILE
608
A
LEU
609
n
57
LEU
609
A
GLU
610
n
58
GLU
610
A
TYR
611
n
1
TYR
611
B
SER
612
n
2
SER
612
B
PRO
613
n
3
PRO
613
B
SER
614
n
4
SER
614
B
SER
615
n
5
SER
615
B
PRO
616
n
6
PRO
616
B
DA2
617
n
7
DA2
617
B
TYR
618
n
8
TYR
618
B
THR
619
n
9
THR
619
B
PRO
620
n
10
PRO
620
B
GLN
621
n
11
GLN
621
B
SER
622
n
12
SER
622
B
PRO
623
n
13
PRO
623
B
author_defined_assembly
2
dimeric
B
DA2
617
NG,NG-DIMETHYL-L-ARGININE
B
DA2
7
ARG
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
VAL
600
A
O
VAL
48
A
N
ALA
587
A
N
ALA
35
A
O
LYS
590
A
O
LYS
38
A
N
GLU
576
A
N
GLU
24
A
O
ALA
575
A
O
ALA
23
A
N
CYS
562
A
N
CYS
10
A
N
PHE
563
A
N
PHE
11
A
O
LYS
606
A
O
LYS
54
5
A
ARG
574
0.087
SIDE CHAIN
13
B
TYR
618
0.084
SIDE CHAIN
1
4.07
0.50
120.30
124.37
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
574
574
574
N
1
12.25
2.00
110.90
123.15
A
A
A
CA
CB
CG2
ILE
ILE
ILE
608
608
608
N
3
5.34
0.50
120.30
125.64
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
574
574
574
N
4
3.35
0.50
120.30
123.65
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
574
574
574
N
4
-4.61
0.60
121.00
116.39
A
A
A
CB
CG
CD1
TYR
TYR
TYR
597
597
597
N
5
-3.98
0.60
121.00
117.02
B
B
B
CB
CG
CD2
TYR
TYR
TYR
618
618
618
N
6
-7.93
1.10
119.40
111.47
A
A
A
NH1
CZ
NH2
ARG
ARG
ARG
574
574
574
N
6
6.11
0.50
120.30
126.41
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
574
574
574
N
6
-3.97
0.60
121.00
117.03
A
A
A
CB
CG
CD1
TYR
TYR
TYR
597
597
597
N
7
7.21
0.50
120.30
127.51
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
574
574
574
N
7
-3.05
0.50
120.30
117.25
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
574
574
574
N
8
-4.15
0.60
121.00
116.85
A
A
A
CB
CG
CD2
TYR
TYR
TYR
573
573
573
N
11
-3.79
0.60
121.00
117.21
A
A
A
CB
CG
CD2
TYR
TYR
TYR
597
597
597
N
12
4.55
0.50
120.30
124.85
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
574
574
574
N
13
-9.90
1.60
100.20
90.30
A
A
A
CG
SD
CE
MET
MET
MET
553
553
553
N
14
-4.33
0.60
121.00
116.67
A
A
A
CB
CG
CD2
TYR
TYR
TYR
566
566
566
N
14
-3.78
0.60
121.00
117.22
A
A
A
CB
CG
CD2
TYR
TYR
TYR
573
573
573
N
14
3.37
0.50
120.30
123.67
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
574
574
574
N
14
-3.78
0.60
121.00
117.22
B
B
B
CB
CG
CD1
TYR
TYR
TYR
611
611
611
N
15
3.11
0.50
120.30
123.41
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
574
574
574
N
16
6.81
0.50
120.30
127.11
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
574
574
574
N
17
4.11
0.60
121.00
125.11
A
A
A
CB
CG
CD2
TYR
TYR
TYR
597
597
597
N
17
-5.74
0.60
121.00
115.26
A
A
A
CB
CG
CD1
TYR
TYR
TYR
597
597
597
N
17
-4.71
0.60
121.00
116.29
B
B
B
CB
CG
CD1
TYR
TYR
TYR
611
611
611
N
18
4.61
0.50
120.30
124.91
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
574
574
574
N
20
5.09
0.50
120.30
125.39
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
574
574
574
N
1
A
ALA
579
-161.82
108.19
1
A
HIS
581
-156.59
-0.92
1
A
SER
583
-142.35
12.65
1
B
SER
614
-150.82
-12.05
1
B
DA2
617
56.52
-48.24
2
A
LEU
580
-119.55
62.13
2
A
HIS
581
-167.73
-33.69
2
A
SER
582
-57.67
-6.92
2
A
PHE
591
-44.85
109.31
2
A
TYR
594
-130.25
-34.34
2
B
SER
612
-171.00
-28.72
2
B
SER
614
-152.38
29.69
2
B
SER
615
32.44
53.98
2
B
DA2
617
-49.89
154.08
2
B
THR
619
-157.86
71.14
2
B
SER
622
-160.74
-43.54
3
A
LYS
554
-153.07
-25.28
3
A
VAL
577
-35.87
119.09
3
A
ALA
579
-169.31
103.71
3
A
SER
583
-169.93
-19.62
3
A
ASP
593
-140.34
24.60
3
A
TYR
594
-152.91
-22.19
3
B
SER
612
49.16
72.32
3
B
TYR
618
-59.96
23.92
3
B
PRO
620
-44.09
151.37
4
A
LYS
554
-134.19
-38.01
4
A
LEU
565
-64.92
93.76
4
A
ALA
579
-164.92
103.90
4
A
SER
583
-56.30
-9.32
4
A
MET
585
-142.43
-37.27
4
A
LEU
609
-155.46
15.93
4
B
SER
615
124.12
-50.23
4
B
DA2
617
-62.49
-178.26
4
B
TYR
618
-47.16
156.83
4
B
GLN
621
-156.12
-14.10
5
A
MET
555
-173.15
55.21
5
A
ALA
579
-163.99
99.70
5
A
LEU
580
-115.25
76.97
5
A
SER
583
-58.61
2.79
5
B
DA2
617
-144.08
14.67
5
B
GLN
621
37.14
42.39
5
B
SER
622
58.25
166.64
6
A
TRP
567
-134.72
-37.75
6
A
ALA
579
-161.11
105.02
6
A
LEU
609
-134.83
-37.36
6
B
SER
612
30.33
76.29
6
B
SER
615
-161.06
73.45
6
B
DA2
617
-141.95
-24.49
6
B
THR
619
64.00
142.47
6
B
PRO
620
-54.36
108.57
6
B
GLN
621
-69.03
4.31
7
A
LYS
554
-77.82
49.21
7
A
ALA
579
-163.49
99.85
7
A
LEU
580
-111.13
60.18
7
A
SER
582
68.97
-12.59
7
A
PHE
591
-56.49
103.11
7
B
DA2
617
69.71
-14.21
7
B
THR
619
-168.13
63.58
8
A
VAL
577
-37.62
116.70
8
A
ALA
579
-160.69
109.60
8
A
LEU
580
-119.44
56.06
8
A
HIS
581
-160.81
-45.31
8
A
SER
582
-58.39
-3.51
8
A
MET
585
-150.17
-3.08
8
A
SER
603
-62.79
4.65
8
B
DA2
617
70.82
-42.87
8
B
THR
619
-148.56
55.91
8
B
SER
622
-166.72
62.43
9
A
MET
555
-116.55
75.11
9
A
ALA
579
-160.47
112.48
9
A
HIS
581
51.21
83.87
9
A
SER
582
-107.63
71.90
9
A
TYR
594
-138.17
-32.71
9
B
SER
612
28.81
75.11
9
B
PRO
616
-69.23
94.53
9
B
DA2
617
87.76
-0.44
10
A
LYS
554
-140.73
-2.27
10
A
ASN
570
73.02
31.75
10
A
SER
582
-65.98
22.01
10
A
MET
585
-162.21
-17.66
10
A
SER
603
-64.50
16.13
10
B
THR
619
-152.02
63.40
11
A
LYS
554
-143.80
-3.05
11
A
TRP
556
-24.90
153.98
11
A
ALA
579
-162.28
104.76
11
A
SER
583
-80.04
41.96
11
B
SER
612
-156.32
76.56
11
B
SER
614
-160.09
71.40
11
B
GLN
621
-146.70
17.87
12
A
TYR
566
-68.68
-175.89
12
A
ALA
579
-162.68
104.44
12
A
HIS
581
-161.94
-42.56
12
A
SER
583
54.21
11.03
12
A
MET
585
-130.34
-32.63
12
A
TYR
594
-143.60
12.04
12
B
DA2
617
-144.49
49.27
12
B
SER
622
37.09
68.04
13
A
LYS
554
-147.73
-6.11
13
A
ALA
579
-165.90
102.72
13
B
PRO
613
-77.73
38.54
13
B
DA2
617
-145.34
-21.12
13
B
THR
619
-174.90
64.61
13
B
PRO
620
-56.89
-8.02
14
A
ALA
579
-166.92
107.61
14
A
LEU
580
-108.07
55.72
14
A
SER
583
45.99
8.08
14
A
MET
585
-137.64
-33.33
14
A
TYR
594
-139.38
-37.16
14
B
SER
614
-162.31
1.34
14
B
THR
619
161.83
134.11
14
B
SER
622
66.72
162.39
15
A
ALA
579
-161.31
98.21
15
A
SER
583
-54.00
-5.91
15
B
SER
612
-152.14
-46.79
15
B
SER
614
-144.99
-49.59
15
B
SER
615
-167.40
118.08
16
A
LYS
554
-59.02
-5.81
16
A
MET
555
-147.12
53.48
16
A
ALA
579
-164.27
98.36
16
A
PHE
591
-48.22
105.25
16
B
PRO
613
-47.87
-13.28
16
B
SER
622
37.26
68.49
17
A
LEU
580
-107.43
61.74
17
A
HIS
581
-143.83
11.97
17
A
SER
583
47.59
17.16
17
A
MET
585
-145.44
-16.52
17
A
PHE
591
-58.72
106.37
17
B
SER
612
74.04
144.86
17
B
GLN
621
48.63
21.13
18
A
ALA
579
-165.94
93.61
18
A
LEU
580
-96.66
38.57
18
A
HIS
581
-149.87
21.26
18
A
SER
583
-166.53
-29.18
18
A
TYR
594
-140.00
-44.20
18
A
LEU
609
-146.82
-37.35
18
B
SER
614
-84.54
31.60
18
B
SER
615
7.41
77.54
19
A
LEU
580
-116.12
57.84
19
A
HIS
581
-147.54
22.02
19
A
SER
582
-63.90
-175.58
19
A
MET
585
-160.29
7.23
19
A
TYR
594
-140.94
-42.59
20
A
ALA
579
-164.07
106.54
20
A
HIS
581
-148.04
-1.63
20
A
PHE
591
-50.47
87.88
20
B
PRO
616
-46.93
-14.17
lowest energy, model 1
TDRD3 complex
1
N
N
2
N
N
covale
1.338
both
B
PRO
616
B
C
PRO
6
1_555
B
DA2
617
B
N
DA2
7
1_555
covale
1.347
both
B
DA2
617
B
C
DA2
7
1_555
B
TYR
618
B
N
TYR
8
1_555
TRANSCRIPTION/TRANSFERASE
aDMA, TRANSCRIPTION-TRANSFERASE complex
TDRD3_HUMAN
UNP
1
554
Q9H7E2
KMWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKPI
RPB1_HUMAN
UNP
2
1804
P24928
YSPSSPRYTPQSP
554
608
2LTO
554
608
Q9H7E2
A
1
2
56
1804
1816
2LTO
611
623
P24928
B
2
1
13
1
expression tag
MET
553
2LTO
A
Q9H7E2
UNP
1
1
expression tag
LEU
609
2LTO
A
Q9H7E2
UNP
57
1
expression tag
GLU
610
2LTO
A
Q9H7E2
UNP
58
5
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
TYR
597
A
TYR
45
A
LEU
601
A
LEU
49
A
THR
586
A
THR
34
A
PHE
591
A
PHE
39
A
PHE
572
A
PHE
20
A
ALA
579
A
ALA
27
A
ASP
560
A
ASP
8
A
LEU
565
A
LEU
13
A
ILE
605
A
ILE
53
A
LYS
606
A
LYS
54