1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Sikorsky, T. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C8 H18 N4 O2 202.254 n NG,NG-DIMETHYL-L-ARGININE ADMA L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N C N 89 N C N 90 N N N 91 S C N 92 N C N 93 N C N 94 N C N 95 N N N 96 N C N 97 N N N 98 N N N 99 N C N 100 N O N 101 N O N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N N N 121 S C N 122 N C N 123 N O N 124 N C N 125 N C N 126 N C N 127 N O N 128 N N N 129 N O N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N N N 141 S C N 142 N C N 143 N O N 144 N C N 145 N C N 146 N C N 147 N O N 148 N O N 149 N O N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N N N 160 N C N 161 N C N 162 N O N 163 N O N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N N N 170 S C N 171 N C N 172 N O N 173 N C Y 174 N C Y 175 N N Y 176 N C Y 177 N C Y 178 N N N 179 N O N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N N N 191 S C N 192 N C N 193 N O N 194 S C N 195 N C N 196 N C N 197 N C N 198 N O N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N N N 213 S C N 214 N C N 215 N O N 216 N C N 217 N C N 218 N C N 219 N C N 220 N O N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N N N 235 S C N 236 N C N 237 N O N 238 N C N 239 N C N 240 N C N 241 N C N 242 N N N 243 N O N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N N N 260 S C N 261 N C N 262 N O N 263 N C N 264 N C N 265 N S N 266 N C N 267 N O N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N N N 280 S C N 281 N C N 282 N O N 283 N C Y 284 N C Y 285 N C Y 286 N C Y 287 N C Y 288 N C Y 289 N C N 290 N O N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N N N 303 S C N 304 N C N 305 N O N 306 N C N 307 N C N 308 N C N 309 N O N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N N N 320 S C N 321 N C N 322 N O N 323 N C N 324 N O N 325 N O N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N N N 334 S C N 335 N C N 336 N O N 337 R C N 338 N O N 339 N C N 340 N O N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N N N 351 S C N 352 N C N 353 N O N 354 N C Y 355 N C Y 356 N C Y 357 N C Y 358 N N Y 359 N C Y 360 N C Y 361 N C Y 362 N C Y 363 N C N 364 N O N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N N N 378 S C N 379 N C N 380 N O N 381 N C Y 382 N C Y 383 N C Y 384 N C Y 385 N C Y 386 N C Y 387 N C N 388 N O N 389 N O N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N N N 402 S C N 403 N C N 404 N O N 405 N C N 406 N C N 407 N C N 408 N O N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N doub N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N doub N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N doub N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N doub N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N doub N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N doub N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N doub N 167 N sing N 168 N sing N 169 N sing N 170 N sing Y 171 N sing Y 172 N doub Y 173 N doub N 174 N sing Y 175 N sing N 176 N sing Y 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N doub N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N doub N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N doub N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N doub N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N doub N 273 N sing N 274 N sing N 275 N sing N 276 N sing Y 277 N doub Y 278 N sing Y 279 N sing N 280 N sing Y 281 N doub N 282 N sing Y 283 N doub N 284 N sing Y 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N doub N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N doub N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N doub N 342 N sing N 343 N sing N 344 N sing N 345 N sing Y 346 N doub Y 347 N sing Y 348 N sing N 349 N sing Y 350 N doub Y 351 N sing Y 352 N sing N 353 N sing Y 354 N sing Y 355 N doub N 356 N sing Y 357 N doub N 358 N sing Y 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N doub N 370 N sing N 371 N sing N 372 N sing N 373 N sing Y 374 N doub Y 375 N sing Y 376 N sing N 377 N sing Y 378 N doub N 379 N sing Y 380 N doub N 381 N sing Y 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N doub N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing UK Nucleic Acids Res. NARHAD 0389 0305-1048 40 11748 11755 10.1093/nar/gks929 23066109 Recognition of asymmetrically dimethylated arginine by TDRD3. 2012 10.2210/pdb2lto/pdb pdb_00002lto 6827.806 Tudor domain-containing protein 3 Tudor domain residues 554-608 1 man polymer 1494.605 DNA-directed RNA polymerase II subunit RPB1 2.7.7.6, 2.7.7.48 UNP residues 1804-1816 1 syn polymer RNA polymerase II subunit B1, DNA-directed RNA polymerase II subunit A, DNA-directed RNA polymerase III largest subunit, RNA-directed RNA polymerase II subunit RPB1 no no MKMWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKPILE MKMWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKPILE A polypeptide(L) no yes YSPSSP(DA2)YTPQSP YSPSSPRYTPQSP B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample TDRD3 9606 Homo sapiens 562 Escherichia coli pET22b atom_site chem_comp_atom chem_comp_bond database_2 entity_poly pdbx_nmr_software pdbx_nmr_spectrometer struct_conn struct_ref_seq_dif repository Initial release Non-polymer description Atomic model Data collection Database references Derived calculations Polymer sequence 1 0 2013-01-16 1 1 2016-06-15 2 0 2023-11-15 _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.auth_atom_id _atom_site.label_atom_id _database_2.pdbx_DOI _database_2.pdbx_database_accession _entity_poly.pdbx_seq_one_letter_code_can _pdbx_nmr_software.name _pdbx_nmr_spectrometer.model _struct_conn.pdbx_leaving_atom_flag _struct_ref_seq_dif.details BMRB Y RCSB 2012-05-30 REL REL REL 9606 human Homo sapiens sample target function 20 20 2D 1H-15N HSQC 3D HBHA(CO)NH 3D HNCA 3D CBCA(CO)NH 3D 1H-13C NOESY aliphatic 3D 1H-13C NOESY aromatic 1.7 mM [U-99% 13C; U-99% 15N] 50 mM 10 mM 150 mM 150 8 ambient 293.15 K simulated annealing 1 lowest energy 1.7 mM [U-99% 13C; U-99% 15N] protein_1, 50 mM sodium phosphate, 10 mM beta-mercaptoethanol, 150 mM sodium chloride, 90% H2O/10% D2O 90% H2O/10% D2O Goddard chemical shift assignment Sparky Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, and Kollman refinement Amber 600 Bruker AVANCE Bruker Avance MET 553 n 1 MET 553 A LYS 554 n 2 LYS 554 A MET 555 n 3 MET 555 A TRP 556 n 4 TRP 556 A LYS 557 n 5 LYS 557 A PRO 558 n 6 PRO 558 A GLY 559 n 7 GLY 559 A ASP 560 n 8 ASP 560 A GLU 561 n 9 GLU 561 A CYS 562 n 10 CYS 562 A PHE 563 n 11 PHE 563 A ALA 564 n 12 ALA 564 A LEU 565 n 13 LEU 565 A TYR 566 n 14 TYR 566 A TRP 567 n 15 TRP 567 A GLU 568 n 16 GLU 568 A ASP 569 n 17 ASP 569 A ASN 570 n 18 ASN 570 A LYS 571 n 19 LYS 571 A PHE 572 n 20 PHE 572 A TYR 573 n 21 TYR 573 A ARG 574 n 22 ARG 574 A ALA 575 n 23 ALA 575 A GLU 576 n 24 GLU 576 A VAL 577 n 25 VAL 577 A GLU 578 n 26 GLU 578 A ALA 579 n 27 ALA 579 A LEU 580 n 28 LEU 580 A HIS 581 n 29 HIS 581 A SER 582 n 30 SER 582 A SER 583 n 31 SER 583 A GLY 584 n 32 GLY 584 A MET 585 n 33 MET 585 A THR 586 n 34 THR 586 A ALA 587 n 35 ALA 587 A VAL 588 n 36 VAL 588 A VAL 589 n 37 VAL 589 A LYS 590 n 38 LYS 590 A PHE 591 n 39 PHE 591 A ILE 592 n 40 ILE 592 A ASP 593 n 41 ASP 593 A TYR 594 n 42 TYR 594 A GLY 595 n 43 GLY 595 A ASN 596 n 44 ASN 596 A TYR 597 n 45 TYR 597 A GLU 598 n 46 GLU 598 A GLU 599 n 47 GLU 599 A VAL 600 n 48 VAL 600 A LEU 601 n 49 LEU 601 A LEU 602 n 50 LEU 602 A SER 603 n 51 SER 603 A ASN 604 n 52 ASN 604 A ILE 605 n 53 ILE 605 A LYS 606 n 54 LYS 606 A PRO 607 n 55 PRO 607 A ILE 608 n 56 ILE 608 A LEU 609 n 57 LEU 609 A GLU 610 n 58 GLU 610 A TYR 611 n 1 TYR 611 B SER 612 n 2 SER 612 B PRO 613 n 3 PRO 613 B SER 614 n 4 SER 614 B SER 615 n 5 SER 615 B PRO 616 n 6 PRO 616 B DA2 617 n 7 DA2 617 B TYR 618 n 8 TYR 618 B THR 619 n 9 THR 619 B PRO 620 n 10 PRO 620 B GLN 621 n 11 GLN 621 B SER 622 n 12 SER 622 B PRO 623 n 13 PRO 623 B author_defined_assembly 2 dimeric B DA2 617 NG,NG-DIMETHYL-L-ARGININE B DA2 7 ARG 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O VAL 600 A O VAL 48 A N ALA 587 A N ALA 35 A O LYS 590 A O LYS 38 A N GLU 576 A N GLU 24 A O ALA 575 A O ALA 23 A N CYS 562 A N CYS 10 A N PHE 563 A N PHE 11 A O LYS 606 A O LYS 54 5 A ARG 574 0.087 SIDE CHAIN 13 B TYR 618 0.084 SIDE CHAIN 1 4.07 0.50 120.30 124.37 A A A NE CZ NH1 ARG ARG ARG 574 574 574 N 1 12.25 2.00 110.90 123.15 A A A CA CB CG2 ILE ILE ILE 608 608 608 N 3 5.34 0.50 120.30 125.64 A A A NE CZ NH1 ARG ARG ARG 574 574 574 N 4 3.35 0.50 120.30 123.65 A A A NE CZ NH1 ARG ARG ARG 574 574 574 N 4 -4.61 0.60 121.00 116.39 A A A CB CG CD1 TYR TYR TYR 597 597 597 N 5 -3.98 0.60 121.00 117.02 B B B CB CG CD2 TYR TYR TYR 618 618 618 N 6 -7.93 1.10 119.40 111.47 A A A NH1 CZ NH2 ARG ARG ARG 574 574 574 N 6 6.11 0.50 120.30 126.41 A A A NE CZ NH1 ARG ARG ARG 574 574 574 N 6 -3.97 0.60 121.00 117.03 A A A CB CG CD1 TYR TYR TYR 597 597 597 N 7 7.21 0.50 120.30 127.51 A A A NE CZ NH1 ARG ARG ARG 574 574 574 N 7 -3.05 0.50 120.30 117.25 A A A NE CZ NH2 ARG ARG ARG 574 574 574 N 8 -4.15 0.60 121.00 116.85 A A A CB CG CD2 TYR TYR TYR 573 573 573 N 11 -3.79 0.60 121.00 117.21 A A A CB CG CD2 TYR TYR TYR 597 597 597 N 12 4.55 0.50 120.30 124.85 A A A NE CZ NH1 ARG ARG ARG 574 574 574 N 13 -9.90 1.60 100.20 90.30 A A A CG SD CE MET MET MET 553 553 553 N 14 -4.33 0.60 121.00 116.67 A A A CB CG CD2 TYR TYR TYR 566 566 566 N 14 -3.78 0.60 121.00 117.22 A A A CB CG CD2 TYR TYR TYR 573 573 573 N 14 3.37 0.50 120.30 123.67 A A A NE CZ NH1 ARG ARG ARG 574 574 574 N 14 -3.78 0.60 121.00 117.22 B B B CB CG CD1 TYR TYR TYR 611 611 611 N 15 3.11 0.50 120.30 123.41 A A A NE CZ NH1 ARG ARG ARG 574 574 574 N 16 6.81 0.50 120.30 127.11 A A A NE CZ NH1 ARG ARG ARG 574 574 574 N 17 4.11 0.60 121.00 125.11 A A A CB CG CD2 TYR TYR TYR 597 597 597 N 17 -5.74 0.60 121.00 115.26 A A A CB CG CD1 TYR TYR TYR 597 597 597 N 17 -4.71 0.60 121.00 116.29 B B B CB CG CD1 TYR TYR TYR 611 611 611 N 18 4.61 0.50 120.30 124.91 A A A NE CZ NH1 ARG ARG ARG 574 574 574 N 20 5.09 0.50 120.30 125.39 A A A NE CZ NH1 ARG ARG ARG 574 574 574 N 1 A ALA 579 -161.82 108.19 1 A HIS 581 -156.59 -0.92 1 A SER 583 -142.35 12.65 1 B SER 614 -150.82 -12.05 1 B DA2 617 56.52 -48.24 2 A LEU 580 -119.55 62.13 2 A HIS 581 -167.73 -33.69 2 A SER 582 -57.67 -6.92 2 A PHE 591 -44.85 109.31 2 A TYR 594 -130.25 -34.34 2 B SER 612 -171.00 -28.72 2 B SER 614 -152.38 29.69 2 B SER 615 32.44 53.98 2 B DA2 617 -49.89 154.08 2 B THR 619 -157.86 71.14 2 B SER 622 -160.74 -43.54 3 A LYS 554 -153.07 -25.28 3 A VAL 577 -35.87 119.09 3 A ALA 579 -169.31 103.71 3 A SER 583 -169.93 -19.62 3 A ASP 593 -140.34 24.60 3 A TYR 594 -152.91 -22.19 3 B SER 612 49.16 72.32 3 B TYR 618 -59.96 23.92 3 B PRO 620 -44.09 151.37 4 A LYS 554 -134.19 -38.01 4 A LEU 565 -64.92 93.76 4 A ALA 579 -164.92 103.90 4 A SER 583 -56.30 -9.32 4 A MET 585 -142.43 -37.27 4 A LEU 609 -155.46 15.93 4 B SER 615 124.12 -50.23 4 B DA2 617 -62.49 -178.26 4 B TYR 618 -47.16 156.83 4 B GLN 621 -156.12 -14.10 5 A MET 555 -173.15 55.21 5 A ALA 579 -163.99 99.70 5 A LEU 580 -115.25 76.97 5 A SER 583 -58.61 2.79 5 B DA2 617 -144.08 14.67 5 B GLN 621 37.14 42.39 5 B SER 622 58.25 166.64 6 A TRP 567 -134.72 -37.75 6 A ALA 579 -161.11 105.02 6 A LEU 609 -134.83 -37.36 6 B SER 612 30.33 76.29 6 B SER 615 -161.06 73.45 6 B DA2 617 -141.95 -24.49 6 B THR 619 64.00 142.47 6 B PRO 620 -54.36 108.57 6 B GLN 621 -69.03 4.31 7 A LYS 554 -77.82 49.21 7 A ALA 579 -163.49 99.85 7 A LEU 580 -111.13 60.18 7 A SER 582 68.97 -12.59 7 A PHE 591 -56.49 103.11 7 B DA2 617 69.71 -14.21 7 B THR 619 -168.13 63.58 8 A VAL 577 -37.62 116.70 8 A ALA 579 -160.69 109.60 8 A LEU 580 -119.44 56.06 8 A HIS 581 -160.81 -45.31 8 A SER 582 -58.39 -3.51 8 A MET 585 -150.17 -3.08 8 A SER 603 -62.79 4.65 8 B DA2 617 70.82 -42.87 8 B THR 619 -148.56 55.91 8 B SER 622 -166.72 62.43 9 A MET 555 -116.55 75.11 9 A ALA 579 -160.47 112.48 9 A HIS 581 51.21 83.87 9 A SER 582 -107.63 71.90 9 A TYR 594 -138.17 -32.71 9 B SER 612 28.81 75.11 9 B PRO 616 -69.23 94.53 9 B DA2 617 87.76 -0.44 10 A LYS 554 -140.73 -2.27 10 A ASN 570 73.02 31.75 10 A SER 582 -65.98 22.01 10 A MET 585 -162.21 -17.66 10 A SER 603 -64.50 16.13 10 B THR 619 -152.02 63.40 11 A LYS 554 -143.80 -3.05 11 A TRP 556 -24.90 153.98 11 A ALA 579 -162.28 104.76 11 A SER 583 -80.04 41.96 11 B SER 612 -156.32 76.56 11 B SER 614 -160.09 71.40 11 B GLN 621 -146.70 17.87 12 A TYR 566 -68.68 -175.89 12 A ALA 579 -162.68 104.44 12 A HIS 581 -161.94 -42.56 12 A SER 583 54.21 11.03 12 A MET 585 -130.34 -32.63 12 A TYR 594 -143.60 12.04 12 B DA2 617 -144.49 49.27 12 B SER 622 37.09 68.04 13 A LYS 554 -147.73 -6.11 13 A ALA 579 -165.90 102.72 13 B PRO 613 -77.73 38.54 13 B DA2 617 -145.34 -21.12 13 B THR 619 -174.90 64.61 13 B PRO 620 -56.89 -8.02 14 A ALA 579 -166.92 107.61 14 A LEU 580 -108.07 55.72 14 A SER 583 45.99 8.08 14 A MET 585 -137.64 -33.33 14 A TYR 594 -139.38 -37.16 14 B SER 614 -162.31 1.34 14 B THR 619 161.83 134.11 14 B SER 622 66.72 162.39 15 A ALA 579 -161.31 98.21 15 A SER 583 -54.00 -5.91 15 B SER 612 -152.14 -46.79 15 B SER 614 -144.99 -49.59 15 B SER 615 -167.40 118.08 16 A LYS 554 -59.02 -5.81 16 A MET 555 -147.12 53.48 16 A ALA 579 -164.27 98.36 16 A PHE 591 -48.22 105.25 16 B PRO 613 -47.87 -13.28 16 B SER 622 37.26 68.49 17 A LEU 580 -107.43 61.74 17 A HIS 581 -143.83 11.97 17 A SER 583 47.59 17.16 17 A MET 585 -145.44 -16.52 17 A PHE 591 -58.72 106.37 17 B SER 612 74.04 144.86 17 B GLN 621 48.63 21.13 18 A ALA 579 -165.94 93.61 18 A LEU 580 -96.66 38.57 18 A HIS 581 -149.87 21.26 18 A SER 583 -166.53 -29.18 18 A TYR 594 -140.00 -44.20 18 A LEU 609 -146.82 -37.35 18 B SER 614 -84.54 31.60 18 B SER 615 7.41 77.54 19 A LEU 580 -116.12 57.84 19 A HIS 581 -147.54 22.02 19 A SER 582 -63.90 -175.58 19 A MET 585 -160.29 7.23 19 A TYR 594 -140.94 -42.59 20 A ALA 579 -164.07 106.54 20 A HIS 581 -148.04 -1.63 20 A PHE 591 -50.47 87.88 20 B PRO 616 -46.93 -14.17 lowest energy, model 1 TDRD3 complex 1 N N 2 N N covale 1.338 both B PRO 616 B C PRO 6 1_555 B DA2 617 B N DA2 7 1_555 covale 1.347 both B DA2 617 B C DA2 7 1_555 B TYR 618 B N TYR 8 1_555 TRANSCRIPTION/TRANSFERASE aDMA, TRANSCRIPTION-TRANSFERASE complex TDRD3_HUMAN UNP 1 554 Q9H7E2 KMWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKPI RPB1_HUMAN UNP 2 1804 P24928 YSPSSPRYTPQSP 554 608 2LTO 554 608 Q9H7E2 A 1 2 56 1804 1816 2LTO 611 623 P24928 B 2 1 13 1 expression tag MET 553 2LTO A Q9H7E2 UNP 1 1 expression tag LEU 609 2LTO A Q9H7E2 UNP 57 1 expression tag GLU 610 2LTO A Q9H7E2 UNP 58 5 anti-parallel anti-parallel anti-parallel anti-parallel A TYR 597 A TYR 45 A LEU 601 A LEU 49 A THR 586 A THR 34 A PHE 591 A PHE 39 A PHE 572 A PHE 20 A ALA 579 A ALA 27 A ASP 560 A ASP 8 A LEU 565 A LEU 13 A ILE 605 A ILE 53 A LYS 606 A LYS 54