1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Nikonowicz, E.P.
Wang, J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
UK
Nucleic Acids Res.
NARHAD
0389
1362-4962
42
10776
10785
10.1093/nar/gku732
25114049
Structure and function of TatD exonuclease in DNA repair.
2014
10.2210/pdb2lun/pdb
pdb_00002lun
8986.374
RNA (28-MER)
1
syn
polymer
no
no
GGGCAGUGAUGCUUCGGCAUAUCAGCCC
GGGCAGUGAUGCUUCGGCAUAUCAGCCC
A
polyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
20.735
1
19
A
1
A
28
-1.534
A_G1:C28_A
1
9.870
-0.873
1.112
0.080
9.806
1
19
A
2
A
27
-5.474
A_G2:C27_A
2
7.790
-1.258
0.628
-0.319
7.290
1
19
A
3
A
26
3.429
A_G3:C26_A
3
0.324
-1.000
0.092
-0.071
-26.570
1
19
A
4
A
25
-10.739
A_C4:G25_A
4
10.827
0.695
1.206
-0.311
0.571
A
5
A
24
-48.221
A_A5:A24_A
5
24.135
-1.942
-1.709
1.398
24.297
1
19
A
6
A
23
0.057
A_G6:C23_A
6
11.975
0.608
0.993
0.114
-1.854
1
16
A
7
A
22
8.978
A_U7:U22_A
7
10.040
1.938
-0.060
-1.351
7.772
A
8
A
21
-17.717
A_G8:A21_A
8
-8.320
7.211
-0.475
-3.149
23.342
1
A
9
A
20
16.765
A_A9:U20_A
9
13.174
-1.434
1.209
-0.086
23.249
1
20
A
10
A
19
6.445
A_U10:A19_A
10
-1.859
0.024
-0.820
-0.170
2.619
1
19
A
11
A
18
3.024
A_G11:C18_A
11
-12.138
-1.299
-0.238
-0.162
-27.493
1
19
A
12
A
17
-9.204
A_C12:G17_A
12
5.242
1.084
0.970
-0.266
3.714
36.693
A
A
1
2
33.341
A
A
28
27
4.749
19.923
-0.528
-0.567
AA_G1G2:C27C28_AA
1
0.871
-1.458
30.959
-4.754
1.007
4.249
32.823
A
A
2
3
19.094
A
A
27
26
4.497
10.600
0.931
-0.210
AA_G2G3:C26C27_AA
2
1.993
-3.590
31.047
-2.875
-1.177
4.724
46.121
A
A
3
4
28.447
A
A
26
25
5.558
21.449
-1.310
-0.821
AA_G3C4:G25C26_AA
3
-5.864
7.777
40.665
-4.145
0.826
0.913
25.861
A
A
4
5
19.959
A
A
25
24
2.858
8.504
-3.545
-0.363
AA_C4A5:A24G25_AA
4
10.480
-24.596
22.111
-2.285
9.738
0.899
50.137
A
A
5
6
22.985
A
A
24
23
3.077
18.590
3.355
-1.528
AA_A5G6:C23A24_AA
5
-19.070
23.579
42.872
-2.692
-4.871
5.862
37.295
A
A
6
7
-4.499
A
A
23
22
5.692
-2.865
1.265
-0.887
AA_G6U7:U22C23_AA
6
5.394
-8.471
36.810
-0.714
-0.708
2.948
58.909
A
A
7
8
11.303
A
A
22
21
3.913
10.895
-2.197
-0.464
AA_U7G8:A21U22_AA
7
18.921
-19.630
55.054
-1.085
3.298
-0.829
15.662
A
A
8
9
-2.815
A
A
21
20
2.221
-0.531
1.247
-3.063
AA_G8A9:U20A21_AA
8
-15.510
82.225
2.119
-11.087
-9.027
2.050
22.842
A
A
9
10
-6.286
A
A
20
19
4.299
-2.315
-2.355
-0.620
AA_A9U10:A19U20_AA
9
13.865
-37.646
18.049
-0.666
11.331
5.241
27.885
A
A
10
11
-5.999
A
A
19
18
5.205
-2.885
0.597
-0.903
AA_U10G11:C18A19_AA
10
-1.133
2.357
27.715
-0.772
-1.673
3.923
53.641
A
A
11
12
40.507
A
A
18
17
4.663
33.940
-1.978
-0.025
AA_G11C12:G17C18_AA
11
-8.107
9.675
41.394
-3.254
1.422
citation
citation_author
database_2
pdbx_database_status
pdbx_nmr_software
repository
Initial release
Database references
Data collection
Database references
Data collection
Database references
Other
1
0
2013-12-18
1
1
2014-08-27
1
2
2018-04-18
1
3
2023-06-14
_citation.journal_volume
_citation.page_first
_citation.page_last
_citation.pdbx_database_id_PubMed
_citation_author.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_nmr_data
_pdbx_nmr_software.name
BMRB
Y
RCSB
2012-06-18
REL
REL
REL
REL
361
structures with the least restraint violations
100
8
2D 1H-13C HSQC
3D 1H-13C NOESY
2D 1H-15N HSQC
2D 1H-1H NOESY
2D 1H-1H NOESY
3D HCCH-COSY
3D 1H-13C NOESY
3D HCCH-TOCSY
2D 1H-31P HetCor
2D 1H-15N HNC-TOCSY-CH
2D 1H-13C H(N)CO
2D 1H-13C CCH-COSY
2D 1H-13C HCNC
2D 1H-15N HSQC
2D 1H-15N HCN
1.5
mM
[U-98% 13C; U-98% 15N]
1.6
mM
[U-98% 13C; U-98% 15N]
50
6.8
ambient
287
K
50
ambient
299
K
simulated annealing
1
lowest energy
1.5 mM [U-98% 13C; U-98% 15N] RNA, 90% H2O/10% D2O
90% H2O/10% D2O
1.6 mM [U-98% 13C; U-98% 15N] RNA, 100% D2O
100% D2O
Schwieters, Kuszewski, Tjandra and Clore
structure solution
X-PLOR NIH
Accelrys Software Inc.
data analysis
Felix
Schwieters, Kuszewski, Tjandra and Clore
refinement
X-PLOR NIH
600
Varian
INOVA
Varian INOVA
800
Varian
INOVA
Varian INOVA
500
Varian
INOVA
Varian INOVA
G
1
n
1
G
1
A
G
2
n
2
G
2
A
G
3
n
3
G
3
A
C
4
n
4
C
4
A
A
5
n
5
A
5
A
G
6
n
6
G
6
A
U
7
n
7
U
7
A
G
8
n
8
G
8
A
A
9
n
9
A
9
A
U
10
n
10
U
10
A
G
11
n
11
G
11
A
C
12
n
12
C
12
A
U
13
n
13
U
13
A
U
14
n
14
U
14
A
C
15
n
15
C
15
A
G
16
n
16
G
16
A
G
17
n
17
G
17
A
C
18
n
18
C
18
A
A
19
n
19
A
19
A
U
20
n
20
U
20
A
A
21
n
21
A
21
A
U
22
n
22
U
22
A
C
23
n
23
C
23
A
A
24
n
24
A
24
A
G
25
n
25
G
25
A
C
26
n
26
C
26
A
C
27
n
27
C
27
A
C
28
n
28
C
28
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
3
A
A
HO2'
O4'
A
U
9
10
1.44
7
A
A
HO2'
O5'
A
U
9
10
1.43
7
A
A
OP2
H42
U
C
14
15
1.57
RNA Aptamer for B. anthracis Ribosomal Protein S8
1
N
N
hydrog
WATSON-CRICK
A
G
1
A
N1
G
1
1_555
A
C
28
A
N3
C
28
1_555
hydrog
WATSON-CRICK
A
G
1
A
N2
G
1
1_555
A
C
28
A
O2
C
28
1_555
hydrog
WATSON-CRICK
A
G
1
A
O6
G
1
1_555
A
C
28
A
N4
C
28
1_555
hydrog
WATSON-CRICK
A
G
2
A
N1
G
2
1_555
A
C
27
A
N3
C
27
1_555
hydrog
WATSON-CRICK
A
G
2
A
N2
G
2
1_555
A
C
27
A
O2
C
27
1_555
hydrog
WATSON-CRICK
A
G
2
A
O6
G
2
1_555
A
C
27
A
N4
C
27
1_555
hydrog
WATSON-CRICK
A
G
3
A
N1
G
3
1_555
A
C
26
A
N3
C
26
1_555
hydrog
WATSON-CRICK
A
G
3
A
N2
G
3
1_555
A
C
26
A
O2
C
26
1_555
hydrog
WATSON-CRICK
A
G
3
A
O6
G
3
1_555
A
C
26
A
N4
C
26
1_555
hydrog
C-A MISPAIR
A
C
4
A
O2
C
4
1_555
A
A
5
A
N6
A
5
1_555
hydrog
WATSON-CRICK
A
C
4
A
N3
C
4
1_555
A
G
25
A
N1
G
25
1_555
hydrog
WATSON-CRICK
A
C
4
A
N4
C
4
1_555
A
G
25
A
O6
G
25
1_555
hydrog
WATSON-CRICK
A
C
4
A
O2
C
4
1_555
A
G
25
A
N2
G
25
1_555
hydrog
A-A MISPAIR
A
A
5
A
N6
A
5
1_555
A
A
24
A
N1
A
24
1_555
hydrog
WATSON-CRICK
A
G
6
A
N1
G
6
1_555
A
C
23
A
N3
C
23
1_555
hydrog
WATSON-CRICK
A
G
6
A
N2
G
6
1_555
A
C
23
A
O2
C
23
1_555
hydrog
WATSON-CRICK
A
G
6
A
O6
G
6
1_555
A
C
23
A
N4
C
23
1_555
hydrog
TYPE_16_PAIR
A
U
7
A
N3
U
7
1_555
A
U
22
A
O4
U
22
1_555
hydrog
TYPE_16_PAIR
A
U
7
A
O2
U
7
1_555
A
U
22
A
N3
U
22
1_555
hydrog
G-A MISPAIR
A
G
8
A
N2
G
8
1_555
A
A
21
A
N7
A
21
1_555
hydrog
A-U PAIR
A
A
9
A
N1
A
9
1_555
A
U
20
A
N3
U
20
1_555
hydrog
WATSON-CRICK
A
U
10
A
N3
U
10
1_555
A
A
19
A
N1
A
19
1_555
hydrog
WATSON-CRICK
A
U
10
A
O4
U
10
1_555
A
A
19
A
N6
A
19
1_555
hydrog
WATSON-CRICK
A
G
11
A
N1
G
11
1_555
A
C
18
A
N3
C
18
1_555
hydrog
WATSON-CRICK
A
G
11
A
N2
G
11
1_555
A
C
18
A
O2
C
18
1_555
hydrog
WATSON-CRICK
A
G
11
A
O6
G
11
1_555
A
C
18
A
N4
C
18
1_555
hydrog
WATSON-CRICK
A
C
12
A
N3
C
12
1_555
A
G
17
A
N1
G
17
1_555
hydrog
WATSON-CRICK
A
C
12
A
N4
C
12
1_555
A
G
17
A
O6
G
17
1_555
hydrog
WATSON-CRICK
A
C
12
A
O2
C
12
1_555
A
G
17
A
N2
G
17
1_555
RNA
Aptamer, Protein S8, Ribosome, Selex, Non-canonical base pairs, RNA
2LUN
PDB
1
2LUN
1
28
2LUN
1
28
2LUN
A
1
1
28