1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Nikonowicz, E.P. Wang, J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking UK Nucleic Acids Res. NARHAD 0389 1362-4962 42 10776 10785 10.1093/nar/gku732 25114049 Structure and function of TatD exonuclease in DNA repair. 2014 10.2210/pdb2lun/pdb pdb_00002lun 8986.374 RNA (28-MER) 1 syn polymer no no GGGCAGUGAUGCUUCGGCAUAUCAGCCC GGGCAGUGAUGCUUCGGCAUAUCAGCCC A polyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n 20.735 1 19 A 1 A 28 -1.534 A_G1:C28_A 1 9.870 -0.873 1.112 0.080 9.806 1 19 A 2 A 27 -5.474 A_G2:C27_A 2 7.790 -1.258 0.628 -0.319 7.290 1 19 A 3 A 26 3.429 A_G3:C26_A 3 0.324 -1.000 0.092 -0.071 -26.570 1 19 A 4 A 25 -10.739 A_C4:G25_A 4 10.827 0.695 1.206 -0.311 0.571 A 5 A 24 -48.221 A_A5:A24_A 5 24.135 -1.942 -1.709 1.398 24.297 1 19 A 6 A 23 0.057 A_G6:C23_A 6 11.975 0.608 0.993 0.114 -1.854 1 16 A 7 A 22 8.978 A_U7:U22_A 7 10.040 1.938 -0.060 -1.351 7.772 A 8 A 21 -17.717 A_G8:A21_A 8 -8.320 7.211 -0.475 -3.149 23.342 1 A 9 A 20 16.765 A_A9:U20_A 9 13.174 -1.434 1.209 -0.086 23.249 1 20 A 10 A 19 6.445 A_U10:A19_A 10 -1.859 0.024 -0.820 -0.170 2.619 1 19 A 11 A 18 3.024 A_G11:C18_A 11 -12.138 -1.299 -0.238 -0.162 -27.493 1 19 A 12 A 17 -9.204 A_C12:G17_A 12 5.242 1.084 0.970 -0.266 3.714 36.693 A A 1 2 33.341 A A 28 27 4.749 19.923 -0.528 -0.567 AA_G1G2:C27C28_AA 1 0.871 -1.458 30.959 -4.754 1.007 4.249 32.823 A A 2 3 19.094 A A 27 26 4.497 10.600 0.931 -0.210 AA_G2G3:C26C27_AA 2 1.993 -3.590 31.047 -2.875 -1.177 4.724 46.121 A A 3 4 28.447 A A 26 25 5.558 21.449 -1.310 -0.821 AA_G3C4:G25C26_AA 3 -5.864 7.777 40.665 -4.145 0.826 0.913 25.861 A A 4 5 19.959 A A 25 24 2.858 8.504 -3.545 -0.363 AA_C4A5:A24G25_AA 4 10.480 -24.596 22.111 -2.285 9.738 0.899 50.137 A A 5 6 22.985 A A 24 23 3.077 18.590 3.355 -1.528 AA_A5G6:C23A24_AA 5 -19.070 23.579 42.872 -2.692 -4.871 5.862 37.295 A A 6 7 -4.499 A A 23 22 5.692 -2.865 1.265 -0.887 AA_G6U7:U22C23_AA 6 5.394 -8.471 36.810 -0.714 -0.708 2.948 58.909 A A 7 8 11.303 A A 22 21 3.913 10.895 -2.197 -0.464 AA_U7G8:A21U22_AA 7 18.921 -19.630 55.054 -1.085 3.298 -0.829 15.662 A A 8 9 -2.815 A A 21 20 2.221 -0.531 1.247 -3.063 AA_G8A9:U20A21_AA 8 -15.510 82.225 2.119 -11.087 -9.027 2.050 22.842 A A 9 10 -6.286 A A 20 19 4.299 -2.315 -2.355 -0.620 AA_A9U10:A19U20_AA 9 13.865 -37.646 18.049 -0.666 11.331 5.241 27.885 A A 10 11 -5.999 A A 19 18 5.205 -2.885 0.597 -0.903 AA_U10G11:C18A19_AA 10 -1.133 2.357 27.715 -0.772 -1.673 3.923 53.641 A A 11 12 40.507 A A 18 17 4.663 33.940 -1.978 -0.025 AA_G11C12:G17C18_AA 11 -8.107 9.675 41.394 -3.254 1.422 citation citation_author database_2 pdbx_database_status pdbx_nmr_software repository Initial release Database references Data collection Database references Data collection Database references Other 1 0 2013-12-18 1 1 2014-08-27 1 2 2018-04-18 1 3 2023-06-14 _citation.journal_volume _citation.page_first _citation.page_last _citation.pdbx_database_id_PubMed _citation_author.name _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.status_code_nmr_data _pdbx_nmr_software.name BMRB Y RCSB 2012-06-18 REL REL REL REL 361 structures with the least restraint violations 100 8 2D 1H-13C HSQC 3D 1H-13C NOESY 2D 1H-15N HSQC 2D 1H-1H NOESY 2D 1H-1H NOESY 3D HCCH-COSY 3D 1H-13C NOESY 3D HCCH-TOCSY 2D 1H-31P HetCor 2D 1H-15N HNC-TOCSY-CH 2D 1H-13C H(N)CO 2D 1H-13C CCH-COSY 2D 1H-13C HCNC 2D 1H-15N HSQC 2D 1H-15N HCN 1.5 mM [U-98% 13C; U-98% 15N] 1.6 mM [U-98% 13C; U-98% 15N] 50 6.8 ambient 287 K 50 ambient 299 K simulated annealing 1 lowest energy 1.5 mM [U-98% 13C; U-98% 15N] RNA, 90% H2O/10% D2O 90% H2O/10% D2O 1.6 mM [U-98% 13C; U-98% 15N] RNA, 100% D2O 100% D2O Schwieters, Kuszewski, Tjandra and Clore structure solution X-PLOR NIH Accelrys Software Inc. data analysis Felix Schwieters, Kuszewski, Tjandra and Clore refinement X-PLOR NIH 600 Varian INOVA Varian INOVA 800 Varian INOVA Varian INOVA 500 Varian INOVA Varian INOVA G 1 n 1 G 1 A G 2 n 2 G 2 A G 3 n 3 G 3 A C 4 n 4 C 4 A A 5 n 5 A 5 A G 6 n 6 G 6 A U 7 n 7 U 7 A G 8 n 8 G 8 A A 9 n 9 A 9 A U 10 n 10 U 10 A G 11 n 11 G 11 A C 12 n 12 C 12 A U 13 n 13 U 13 A U 14 n 14 U 14 A C 15 n 15 C 15 A G 16 n 16 G 16 A G 17 n 17 G 17 A C 18 n 18 C 18 A A 19 n 19 A 19 A U 20 n 20 U 20 A A 21 n 21 A 21 A U 22 n 22 U 22 A C 23 n 23 C 23 A A 24 n 24 A 24 A G 25 n 25 G 25 A C 26 n 26 C 26 A C 27 n 27 C 27 A C 28 n 28 C 28 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 3 A A HO2' O4' A U 9 10 1.44 7 A A HO2' O5' A U 9 10 1.43 7 A A OP2 H42 U C 14 15 1.57 RNA Aptamer for B. anthracis Ribosomal Protein S8 1 N N hydrog WATSON-CRICK A G 1 A N1 G 1 1_555 A C 28 A N3 C 28 1_555 hydrog WATSON-CRICK A G 1 A N2 G 1 1_555 A C 28 A O2 C 28 1_555 hydrog WATSON-CRICK A G 1 A O6 G 1 1_555 A C 28 A N4 C 28 1_555 hydrog WATSON-CRICK A G 2 A N1 G 2 1_555 A C 27 A N3 C 27 1_555 hydrog WATSON-CRICK A G 2 A N2 G 2 1_555 A C 27 A O2 C 27 1_555 hydrog WATSON-CRICK A G 2 A O6 G 2 1_555 A C 27 A N4 C 27 1_555 hydrog WATSON-CRICK A G 3 A N1 G 3 1_555 A C 26 A N3 C 26 1_555 hydrog WATSON-CRICK A G 3 A N2 G 3 1_555 A C 26 A O2 C 26 1_555 hydrog WATSON-CRICK A G 3 A O6 G 3 1_555 A C 26 A N4 C 26 1_555 hydrog C-A MISPAIR A C 4 A O2 C 4 1_555 A A 5 A N6 A 5 1_555 hydrog WATSON-CRICK A C 4 A N3 C 4 1_555 A G 25 A N1 G 25 1_555 hydrog WATSON-CRICK A C 4 A N4 C 4 1_555 A G 25 A O6 G 25 1_555 hydrog WATSON-CRICK A C 4 A O2 C 4 1_555 A G 25 A N2 G 25 1_555 hydrog A-A MISPAIR A A 5 A N6 A 5 1_555 A A 24 A N1 A 24 1_555 hydrog WATSON-CRICK A G 6 A N1 G 6 1_555 A C 23 A N3 C 23 1_555 hydrog WATSON-CRICK A G 6 A N2 G 6 1_555 A C 23 A O2 C 23 1_555 hydrog WATSON-CRICK A G 6 A O6 G 6 1_555 A C 23 A N4 C 23 1_555 hydrog TYPE_16_PAIR A U 7 A N3 U 7 1_555 A U 22 A O4 U 22 1_555 hydrog TYPE_16_PAIR A U 7 A O2 U 7 1_555 A U 22 A N3 U 22 1_555 hydrog G-A MISPAIR A G 8 A N2 G 8 1_555 A A 21 A N7 A 21 1_555 hydrog A-U PAIR A A 9 A N1 A 9 1_555 A U 20 A N3 U 20 1_555 hydrog WATSON-CRICK A U 10 A N3 U 10 1_555 A A 19 A N1 A 19 1_555 hydrog WATSON-CRICK A U 10 A O4 U 10 1_555 A A 19 A N6 A 19 1_555 hydrog WATSON-CRICK A G 11 A N1 G 11 1_555 A C 18 A N3 C 18 1_555 hydrog WATSON-CRICK A G 11 A N2 G 11 1_555 A C 18 A O2 C 18 1_555 hydrog WATSON-CRICK A G 11 A O6 G 11 1_555 A C 18 A N4 C 18 1_555 hydrog WATSON-CRICK A C 12 A N3 C 12 1_555 A G 17 A N1 G 17 1_555 hydrog WATSON-CRICK A C 12 A N4 C 12 1_555 A G 17 A O6 G 17 1_555 hydrog WATSON-CRICK A C 12 A O2 C 12 1_555 A G 17 A N2 G 17 1_555 RNA Aptamer, Protein S8, Ribosome, Selex, Non-canonical base pairs, RNA 2LUN PDB 1 2LUN 1 28 2LUN 1 28 2LUN A 1 1 28