1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Nikonowicz, E.P. Wang, J. Moran, S. Donarski, J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking To be Published 0353 Solution Structure of Helix-35 Stem-loop from E. coli 23S rRNA 10.2210/pdb2lv0/pdb pdb_00002lv0 7717.646 RNA (5'-R(*GP*GP*GP*CP*UP*AP*AP*UP*GP*UP*UP*GP*AP*AP*AP*AP*AP*UP*UP*AP*GP*CP*CP*C)-3') 1 syn polymer no no GGGCUAAUGUUGAAAAAUUAGCCC GGGCUAAUGUUGAAAAAUUAGCCC A polyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n 19.738 1 A 1 A 24 2.603 A_G1:C24_A 1 0.676 -0.131 -0.008 0.461 -4.110 1 19 A 2 A 23 -4.353 A_G2:C23_A 2 2.180 0.100 -1.077 0.101 -5.893 1 A 3 A 22 -6.048 A_G3:C22_A 3 -13.004 -0.037 -0.423 0.233 11.206 1 19 A 4 A 21 -3.482 A_C4:G21_A 4 -10.351 -0.010 -0.638 0.356 3.149 1 20 A 5 A 20 -2.035 A_U5:A20_A 5 -11.869 0.084 -0.288 0.093 -5.946 1 20 A 6 A 19 1.627 A_A6:U19_A 6 -5.307 -0.213 0.667 0.043 -11.719 1 20 A 7 A 18 -3.367 A_A7:U18_A 7 -11.142 -0.078 0.321 0.164 16.700 A 9 A 16 2.421 A_G9:A16_A 8 -0.191 1.261 -1.124 1.953 25.346 A 10 A 15 8.423 A_U10:A15_A 9 2.555 4.333 -0.426 0.013 49.404 A 11 A 14 16.535 A_U11:A14_A 10 -1.659 6.822 0.703 -4.120 3.971 32.677 A A 1 2 26.392 A A 24 23 5.123 14.366 -0.765 -1.491 AA_G1G2:C23C24_AA 1 0.549 -1.009 29.422 -6.302 1.500 3.416 28.029 A A 2 3 13.826 A A 23 22 3.937 6.630 0.127 -1.701 AA_G2G3:C22C23_AA 2 -1.984 4.137 27.178 -5.301 -0.796 3.373 29.052 A A 3 4 -4.809 A A 22 21 3.278 -2.409 0.133 -1.270 AA_G3C4:G21C22_AA 3 1.554 -3.102 28.914 -1.993 0.082 3.112 32.260 A A 4 5 19.776 A A 21 20 3.828 10.787 -0.031 -1.551 AA_C4U5:A20G21_AA 4 -0.039 0.072 30.449 -4.888 0.047 2.217 38.907 A A 5 6 31.597 A A 20 19 3.453 20.020 0.213 -1.402 AA_U5A6:U19A20_AA 5 -5.761 9.092 33.044 -4.401 -0.980 2.819 35.438 A A 6 7 23.466 A A 19 18 3.669 13.921 -0.321 -1.486 AA_A6A7:U18U19_AA 6 0.448 -0.754 32.667 -4.557 0.595 6.789 58.860 A A 7 9 4.686 A A 18 16 6.736 4.567 1.680 -1.864 AA_A7G9:A16U18_AA 7 13.523 -13.876 57.254 -2.392 -0.244 4.015 31.241 A A 9 10 -7.415 A A 16 15 4.066 -3.981 1.256 -0.479 AA_G9U10:A15A16_AA 8 -1.850 3.447 30.939 0.047 -2.767 3.182 43.074 A A 10 11 12.933 A A 15 14 3.215 9.423 0.765 0.052 AA_U10U11:A14A15_AA 9 1.766 -2.424 42.043 -0.849 -0.869 database_2 pdbx_database_status pdbx_nmr_software repository Initial release Data collection Database references Other 1 0 2013-06-26 1 1 2023-06-14 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.status_code_nmr_data _pdbx_nmr_software.name BMRB Y RCSB 2012-06-26 REL REL REL REL RNA was prepared by in vitro transcription sample 22 345 target function 100 11 2D 1H-15N HSQC 2D 1H-13C HSQC 3D HCCH-TOCSY 3D 1H-13C NOESY 2D 1H-1H NOESY 2D DQF-COSY 2D 1H-1H NOESY 3D HCCH-COSY 2D 1H-31P HetCor 2D 1H-15N HMQC 2D 1H-13C ctHSQC-31P 2D 1H-15N HCN 3D 1H-15N NOESY 1.2 mM [U-99% 13C; U-99% 15N] 10 mM 10 mM 0.1 mM 1.6 mM 10 mM 10 mM 0.1 mM 1.6 mM 10 mM 10 mM 0.1 mM 1.2 mM [U-99% 13C; U-99% 15N] 10 mM 10 mM 0.1 mM 20 6.8 ambient 298 K 20 6.8 ambient 283 K simulated annealing 1 closest to the average 1.2 mM [U-99% 13C; U-99% 15N] RNA, 10 mM potassium phosphate, 10 mM sodium chloride, 0.1 mM EDTA, 100% D2O 100% D2O 1.6 mM RNA, 10 mM potassium phosphate, 10 mM sodium chloride, 0.1 mM EDTA, 100% D2O 100% D2O 1.6 mM RNA, 10 mM potassium phosphate, 10 mM sodium chloride, 0.1 mM EDTA, 90% H2O/10% D2O 90% H2O/10% D2O 1.2 mM [U-99% 13C; U-99% 15N] RNA, 10 mM potassium phosphate, 10 mM sodium chloride, 0.1 mM EDTA, 90% H2O/10% D2O 90% H2O/10% D2O Schwieters, Kuszewski, Tjandra and Clore structure solution X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore refinement X-PLOR NIH Accelrys Software Inc. processing Felix Accelrys Software Inc. refinement Felix Varian collection VNMR Varian refinement VNMR 600 Varian INOVA Varian INOVA 500 Varian INOVA Varian INOVA GUA 1 n 1 G 1 A GUA 2 n 2 G 2 A GUA 3 n 3 G 3 A CYT 4 n 4 C 4 A URI 5 n 5 U 5 A ADE 6 n 6 A 6 A ADE 7 n 7 A 7 A URI 8 n 8 U 8 A GUA 9 n 9 G 9 A URI 10 n 10 U 10 A URI 11 n 11 U 11 A GUA 12 n 12 G 12 A ADE 13 n 13 A 13 A ADE 14 n 14 A 14 A ADE 15 n 15 A 15 A ADE 16 n 16 A 16 A ADE 17 n 17 A 17 A URI 18 n 18 U 18 A URI 19 n 19 U 19 A ADE 20 n 20 A 20 A GUA 21 n 21 G 21 A CYT 22 n 22 C 22 A CYT 23 n 23 C 23 A CYT 24 n 24 C 24 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 4 A A O2' H8 A A 14 15 1.58 5 A A O2 H62 U A 11 14 1.59 1 4.52 0.50 113.10 117.62 A A A N7 C8 N9 G G G 1 1 1 N 1 -2.93 0.40 106.40 103.47 A A A C8 N9 C4 G G G 1 1 1 N 1 4.58 0.50 113.10 117.68 A A A N7 C8 N9 G G G 2 2 2 N 1 -2.91 0.40 106.40 103.49 A A A C8 N9 C4 G G G 2 2 2 N 1 4.52 0.50 113.10 117.62 A A A N7 C8 N9 G G G 3 3 3 N 1 -2.88 0.40 106.40 103.52 A A A C8 N9 C4 G G G 3 3 3 N 1 3.81 0.50 113.80 117.61 A A A N7 C8 N9 A A A 6 6 6 N 1 -2.47 0.40 105.80 103.33 A A A C8 N9 C4 A A A 6 6 6 N 1 3.82 0.50 113.80 117.62 A A A N7 C8 N9 A A A 7 7 7 N 1 -2.52 0.40 105.80 103.28 A A A C8 N9 C4 A A A 7 7 7 N 1 5.50 0.70 108.50 114.00 A A A O4' C1' N9 G G G 9 9 9 N 1 4.46 0.50 113.10 117.56 A A A N7 C8 N9 G G G 9 9 9 N 1 -3.06 0.40 106.40 103.34 A A A C8 N9 C4 G G G 9 9 9 N 1 4.84 0.80 101.50 106.34 A A A C3' C2' C1' U U U 11 11 11 N 1 4.57 0.50 113.10 117.67 A A A N7 C8 N9 G G G 12 12 12 N 1 -2.91 0.40 106.40 103.49 A A A C8 N9 C4 G G G 12 12 12 N 1 3.74 0.50 113.80 117.54 A A A N7 C8 N9 A A A 13 13 13 N 1 -2.58 0.40 105.80 103.22 A A A C8 N9 C4 A A A 13 13 13 N 1 3.62 0.50 113.80 117.42 A A A N7 C8 N9 A A A 14 14 14 N 1 3.84 0.50 113.80 117.64 A A A N7 C8 N9 A A A 15 15 15 N 1 -2.49 0.40 105.80 103.31 A A A C8 N9 C4 A A A 15 15 15 N 1 3.77 0.50 113.80 117.57 A A A N7 C8 N9 A A A 16 16 16 N 1 -2.50 0.40 105.80 103.30 A A A C8 N9 C4 A A A 16 16 16 N 1 3.73 0.50 113.80 117.53 A A A N7 C8 N9 A A A 17 17 17 N 1 -2.47 0.40 105.80 103.33 A A A C8 N9 C4 A A A 17 17 17 N 1 3.79 0.50 113.80 117.59 A A A N7 C8 N9 A A A 20 20 20 N 1 -2.47 0.40 105.80 103.33 A A A C8 N9 C4 A A A 20 20 20 N 1 4.57 0.50 113.10 117.67 A A A N7 C8 N9 G G G 21 21 21 N 1 -2.92 0.40 106.40 103.48 A A A C8 N9 C4 G G G 21 21 21 N 2 4.54 0.50 113.10 117.64 A A A N7 C8 N9 G G G 1 1 1 N 2 -2.92 0.40 106.40 103.48 A A A C8 N9 C4 G G G 1 1 1 N 2 4.74 0.50 113.10 117.84 A A A N7 C8 N9 G G G 2 2 2 N 2 -2.94 0.40 106.40 103.46 A A A C8 N9 C4 G G G 2 2 2 N 2 4.53 0.50 113.10 117.63 A A A N7 C8 N9 G G G 3 3 3 N 2 -2.90 0.40 106.40 103.50 A A A C8 N9 C4 G G G 3 3 3 N 2 3.77 0.50 113.80 117.57 A A A N7 C8 N9 A A A 6 6 6 N 2 -2.43 0.40 105.80 103.37 A A A C8 N9 C4 A A A 6 6 6 N 2 3.84 0.50 113.80 117.64 A A A N7 C8 N9 A A A 7 7 7 N 2 -2.53 0.40 105.80 103.27 A A A C8 N9 C4 A A A 7 7 7 N 2 5.41 0.70 108.50 113.91 A A A O4' C1' N9 G G G 9 9 9 N 2 4.45 0.50 113.10 117.55 A A A N7 C8 N9 G G G 9 9 9 N 2 -3.02 0.40 106.40 103.38 A A A C8 N9 C4 G G G 9 9 9 N 2 4.61 0.50 113.10 117.71 A A A N7 C8 N9 G G G 12 12 12 N 2 -2.92 0.40 106.40 103.48 A A A C8 N9 C4 G G G 12 12 12 N 2 3.65 0.50 113.80 117.45 A A A N7 C8 N9 A A A 13 13 13 N 2 -2.52 0.40 105.80 103.28 A A A C8 N9 C4 A A A 13 13 13 N 2 3.62 0.50 113.80 117.42 A A A N7 C8 N9 A A A 14 14 14 N 2 3.80 0.50 113.80 117.60 A A A N7 C8 N9 A A A 15 15 15 N 2 -2.47 0.40 105.80 103.33 A A A C8 N9 C4 A A A 15 15 15 N 2 3.83 0.50 113.80 117.63 A A A N7 C8 N9 A A A 16 16 16 N 2 -2.48 0.40 105.80 103.32 A A A C8 N9 C4 A A A 16 16 16 N 2 3.70 0.50 113.80 117.50 A A A N7 C8 N9 A A A 17 17 17 N 2 -2.48 0.40 105.80 103.32 A A A C8 N9 C4 A A A 17 17 17 N 2 3.68 0.50 113.80 117.48 A A A N7 C8 N9 A A A 20 20 20 N 2 4.54 0.50 113.10 117.64 A A A N7 C8 N9 G G G 21 21 21 N 2 -2.95 0.40 106.40 103.45 A A A C8 N9 C4 G G G 21 21 21 N 3 4.53 0.50 113.10 117.63 A A A N7 C8 N9 G G G 1 1 1 N 3 -2.89 0.40 106.40 103.51 A A A C8 N9 C4 G G G 1 1 1 N 3 4.66 0.50 113.10 117.76 A A A N7 C8 N9 G G G 2 2 2 N 3 -2.84 0.40 106.40 103.56 A A A C8 N9 C4 G G G 2 2 2 N 3 4.54 0.50 113.10 117.64 A A A N7 C8 N9 G G G 3 3 3 N 3 -2.88 0.40 106.40 103.52 A A A C8 N9 C4 G G G 3 3 3 N 3 3.80 0.50 113.80 117.60 A A A N7 C8 N9 A A A 6 6 6 N 3 -2.45 0.40 105.80 103.35 A A A C8 N9 C4 A A A 6 6 6 N 3 3.77 0.50 113.80 117.57 A A A N7 C8 N9 A A A 7 7 7 N 3 -2.43 0.40 105.80 103.37 A A A C8 N9 C4 A A A 7 7 7 N 3 5.39 0.70 108.50 113.89 A A A O4' C1' N9 G G G 9 9 9 N 3 4.46 0.50 113.10 117.56 A A A N7 C8 N9 G G G 9 9 9 N 3 -3.10 0.40 106.40 103.30 A A A C8 N9 C4 G G G 9 9 9 N 3 4.55 0.50 113.10 117.65 A A A N7 C8 N9 G G G 12 12 12 N 3 -2.89 0.40 106.40 103.51 A A A C8 N9 C4 G G G 12 12 12 N 3 3.61 0.50 113.80 117.41 A A A N7 C8 N9 A A A 13 13 13 N 3 -2.52 0.40 105.80 103.28 A A A C8 N9 C4 A A A 13 13 13 N 3 3.64 0.50 113.80 117.44 A A A N7 C8 N9 A A A 14 14 14 N 3 3.78 0.50 113.80 117.58 A A A N7 C8 N9 A A A 15 15 15 N 3 -2.52 0.40 105.80 103.28 A A A C8 N9 C4 A A A 15 15 15 N 3 3.77 0.50 113.80 117.57 A A A N7 C8 N9 A A A 16 16 16 N 3 3.73 0.50 113.80 117.53 A A A N7 C8 N9 A A A 17 17 17 N 3 -2.50 0.40 105.80 103.30 A A A C8 N9 C4 A A A 17 17 17 N 3 3.70 0.50 113.80 117.50 A A A N7 C8 N9 A A A 20 20 20 N 3 4.65 0.50 113.10 117.75 A A A N7 C8 N9 G G G 21 21 21 N 3 -2.98 0.40 106.40 103.42 A A A C8 N9 C4 G G G 21 21 21 N 4 4.64 0.50 113.10 117.74 A A A N7 C8 N9 G G G 1 1 1 N 4 -2.91 0.40 106.40 103.49 A A A C8 N9 C4 G G G 1 1 1 N 4 4.65 0.50 113.10 117.75 A A A N7 C8 N9 G G G 2 2 2 N 4 -2.90 0.40 106.40 103.50 A A A C8 N9 C4 G G G 2 2 2 N 4 4.52 0.50 113.10 117.62 A A A N7 C8 N9 G G G 3 3 3 N 4 -2.90 0.40 106.40 103.50 A A A C8 N9 C4 G G G 3 3 3 N 4 3.77 0.50 113.80 117.57 A A A N7 C8 N9 A A A 6 6 6 N 4 -2.48 0.40 105.80 103.32 A A A C8 N9 C4 A A A 6 6 6 N 4 3.94 0.50 113.80 117.74 A A A N7 C8 N9 A A A 7 7 7 N 4 -2.57 0.40 105.80 103.23 A A A C8 N9 C4 A A A 7 7 7 N 4 5.43 0.70 108.50 113.93 A A A O4' C1' N9 G G G 9 9 9 N 4 4.46 0.50 113.10 117.56 A A A N7 C8 N9 G G G 9 9 9 N 4 -3.06 0.40 106.40 103.34 A A A C8 N9 C4 G G G 9 9 9 N 4 5.02 0.80 101.50 106.52 A A A C3' C2' C1' U U U 11 11 11 N 4 4.60 0.50 113.10 117.70 A A A N7 C8 N9 G G G 12 12 12 N 4 -2.92 0.40 106.40 103.48 A A A C8 N9 C4 G G G 12 12 12 N 4 3.62 0.50 113.80 117.42 A A A N7 C8 N9 A A A 13 13 13 N 4 -2.50 0.40 105.80 103.30 A A A C8 N9 C4 A A A 13 13 13 N 4 3.63 0.50 113.80 117.43 A A A N7 C8 N9 A A A 14 14 14 N 4 -2.41 0.40 105.80 103.39 A A A C8 N9 C4 A A A 14 14 14 N 4 3.85 0.50 113.80 117.65 A A A N7 C8 N9 A A A 15 15 15 N 4 -2.54 0.40 105.80 103.26 A A A C8 N9 C4 A A A 15 15 15 N 4 3.74 0.50 113.80 117.54 A A A N7 C8 N9 A A A 16 16 16 N 4 -2.51 0.40 105.80 103.29 A A A C8 N9 C4 A A A 16 16 16 N 4 3.76 0.50 113.80 117.56 A A A N7 C8 N9 A A A 17 17 17 N 4 -2.54 0.40 105.80 103.26 A A A C8 N9 C4 A A A 17 17 17 N 4 3.80 0.50 113.80 117.60 A A A N7 C8 N9 A A A 20 20 20 N 4 -2.46 0.40 105.80 103.34 A A A C8 N9 C4 A A A 20 20 20 N 4 4.57 0.50 113.10 117.67 A A A N7 C8 N9 G G G 21 21 21 N 4 -2.92 0.40 106.40 103.48 A A A C8 N9 C4 G G G 21 21 21 N 5 4.52 0.50 113.10 117.62 A A A N7 C8 N9 G G G 1 1 1 N 5 -2.92 0.40 106.40 103.48 A A A C8 N9 C4 G G G 1 1 1 N 5 4.58 0.50 113.10 117.68 A A A N7 C8 N9 G G G 2 2 2 N 5 -2.86 0.40 106.40 103.54 A A A C8 N9 C4 G G G 2 2 2 N 5 4.54 0.50 113.10 117.64 A A A N7 C8 N9 G G G 3 3 3 N 5 -2.93 0.40 106.40 103.47 A A A C8 N9 C4 G G G 3 3 3 N 5 3.83 0.50 113.80 117.63 A A A N7 C8 N9 A A A 6 6 6 N 5 -2.53 0.40 105.80 103.27 A A A C8 N9 C4 A A A 6 6 6 N 5 3.79 0.50 113.80 117.59 A A A N7 C8 N9 A A A 7 7 7 N 5 -2.53 0.40 105.80 103.27 A A A C8 N9 C4 A A A 7 7 7 N 5 5.54 0.70 108.50 114.04 A A A O4' C1' N9 G G G 9 9 9 N 5 4.44 0.50 113.10 117.54 A A A N7 C8 N9 G G G 9 9 9 N 5 -3.02 0.40 106.40 103.38 A A A C8 N9 C4 G G G 9 9 9 N 5 4.58 0.50 113.10 117.68 A A A N7 C8 N9 G G G 12 12 12 N 5 -2.92 0.40 106.40 103.48 A A A C8 N9 C4 G G G 12 12 12 N 5 3.63 0.50 113.80 117.43 A A A N7 C8 N9 A A A 13 13 13 N 5 -2.48 0.40 105.80 103.32 A A A C8 N9 C4 A A A 13 13 13 N 5 3.69 0.50 113.80 117.49 A A A N7 C8 N9 A A A 14 14 14 N 5 -2.44 0.40 105.80 103.36 A A A C8 N9 C4 A A A 14 14 14 N 5 3.69 0.50 113.80 117.49 A A A N7 C8 N9 A A A 15 15 15 N 5 -2.41 0.40 105.80 103.39 A A A C8 N9 C4 A A A 15 15 15 N 5 3.76 0.50 113.80 117.56 A A A N7 C8 N9 A A A 16 16 16 N 5 -2.42 0.40 105.80 103.38 A A A C8 N9 C4 A A A 16 16 16 N 5 3.73 0.50 113.80 117.53 A A A N7 C8 N9 A A A 17 17 17 N 5 -2.47 0.40 105.80 103.33 A A A C8 N9 C4 A A A 17 17 17 N 5 3.81 0.50 113.80 117.61 A A A N7 C8 N9 A A A 20 20 20 N 5 -2.45 0.40 105.80 103.35 A A A C8 N9 C4 A A A 20 20 20 N 5 4.65 0.50 113.10 117.75 A A A N7 C8 N9 G G G 21 21 21 N 5 -2.93 0.40 106.40 103.47 A A A C8 N9 C4 G G G 21 21 21 N 6 4.49 0.50 113.10 117.59 A A A N7 C8 N9 G G G 1 1 1 N 6 -2.87 0.40 106.40 103.53 A A A C8 N9 C4 G G G 1 1 1 N 6 4.64 0.50 113.10 117.74 A A A N7 C8 N9 G G G 2 2 2 N 6 -2.90 0.40 106.40 103.50 A A A C8 N9 C4 G G G 2 2 2 N 6 4.56 0.50 113.10 117.66 A A A N7 C8 N9 G G G 3 3 3 N 6 -2.89 0.40 106.40 103.51 A A A C8 N9 C4 G G G 3 3 3 N 6 3.73 0.50 113.80 117.53 A A A N7 C8 N9 A A A 6 6 6 N 6 3.80 0.50 113.80 117.60 A A A N7 C8 N9 A A A 7 7 7 N 6 -2.50 0.40 105.80 103.30 A A A C8 N9 C4 A A A 7 7 7 N 6 5.39 0.70 108.50 113.89 A A A O4' C1' N9 G G G 9 9 9 N 6 4.45 0.50 113.10 117.55 A A A N7 C8 N9 G G G 9 9 9 N 6 -3.04 0.40 106.40 103.36 A A A C8 N9 C4 G G G 9 9 9 N 6 4.86 0.80 101.50 106.36 A A A C3' C2' C1' U U U 11 11 11 N 6 4.54 0.50 113.10 117.64 A A A N7 C8 N9 G G G 12 12 12 N 6 -2.84 0.40 106.40 103.56 A A A C8 N9 C4 G G G 12 12 12 N 6 3.67 0.50 113.80 117.47 A A A N7 C8 N9 A A A 13 13 13 N 6 -2.51 0.40 105.80 103.29 A A A C8 N9 C4 A A A 13 13 13 N 6 3.64 0.50 113.80 117.44 A A A N7 C8 N9 A A A 14 14 14 N 6 3.72 0.50 113.80 117.52 A A A N7 C8 N9 A A A 15 15 15 N 6 -2.43 0.40 105.80 103.37 A A A C8 N9 C4 A A A 15 15 15 N 6 3.76 0.50 113.80 117.56 A A A N7 C8 N9 A A A 16 16 16 N 6 -2.42 0.40 105.80 103.38 A A A C8 N9 C4 A A A 16 16 16 N 6 3.72 0.50 113.80 117.52 A A A N7 C8 N9 A A A 17 17 17 N 6 -2.50 0.40 105.80 103.30 A A A C8 N9 C4 A A A 17 17 17 N 6 3.77 0.50 113.80 117.57 A A A N7 C8 N9 A A A 20 20 20 N 6 -2.46 0.40 105.80 103.34 A A A C8 N9 C4 A A A 20 20 20 N 6 4.53 0.50 113.10 117.63 A A A N7 C8 N9 G G G 21 21 21 N 6 -2.93 0.40 106.40 103.47 A A A C8 N9 C4 G G G 21 21 21 N 7 4.44 0.50 113.10 117.54 A A A N7 C8 N9 G G G 1 1 1 N 7 -2.82 0.40 106.40 103.58 A A A C8 N9 C4 G G G 1 1 1 N 7 4.63 0.50 113.10 117.73 A A A N7 C8 N9 G G G 2 2 2 N 7 -2.89 0.40 106.40 103.51 A A A C8 N9 C4 G G G 2 2 2 N 7 4.52 0.50 113.10 117.62 A A A N7 C8 N9 G G G 3 3 3 N 7 -2.90 0.40 106.40 103.50 A A A C8 N9 C4 G G G 3 3 3 N 7 3.79 0.50 113.80 117.59 A A A N7 C8 N9 A A A 6 6 6 N 7 -2.45 0.40 105.80 103.35 A A A C8 N9 C4 A A A 6 6 6 N 7 3.84 0.50 113.80 117.64 A A A N7 C8 N9 A A A 7 7 7 N 7 -2.46 0.40 105.80 103.34 A A A C8 N9 C4 A A A 7 7 7 N 7 5.53 0.70 108.50 114.03 A A A O4' C1' N9 G G G 9 9 9 N 7 4.42 0.50 113.10 117.52 A A A N7 C8 N9 G G G 9 9 9 N 7 -3.00 0.40 106.40 103.40 A A A C8 N9 C4 G G G 9 9 9 N 7 4.87 0.80 101.50 106.37 A A A C3' C2' C1' U U U 11 11 11 N 7 4.60 0.50 113.10 117.70 A A A N7 C8 N9 G G G 12 12 12 N 7 -2.91 0.40 106.40 103.49 A A A C8 N9 C4 G G G 12 12 12 N 7 3.64 0.50 113.80 117.44 A A A N7 C8 N9 A A A 13 13 13 N 7 -2.52 0.40 105.80 103.28 A A A C8 N9 C4 A A A 13 13 13 N 7 3.67 0.50 113.80 117.47 A A A N7 C8 N9 A A A 14 14 14 N 7 3.82 0.50 113.80 117.62 A A A N7 C8 N9 A A A 15 15 15 N 7 -2.54 0.40 105.80 103.26 A A A C8 N9 C4 A A A 15 15 15 N 7 3.78 0.50 113.80 117.58 A A A N7 C8 N9 A A A 16 16 16 N 7 3.72 0.50 113.80 117.52 A A A N7 C8 N9 A A A 17 17 17 N 7 -2.46 0.40 105.80 103.34 A A A C8 N9 C4 A A A 17 17 17 N 7 3.75 0.50 113.80 117.55 A A A N7 C8 N9 A A A 20 20 20 N 7 -2.40 0.40 105.80 103.40 A A A C8 N9 C4 A A A 20 20 20 N 7 4.51 0.50 113.10 117.61 A A A N7 C8 N9 G G G 21 21 21 N 7 -2.87 0.40 106.40 103.53 A A A C8 N9 C4 G G G 21 21 21 N 8 4.61 0.50 113.10 117.71 A A A N7 C8 N9 G G G 1 1 1 N 8 -2.97 0.40 106.40 103.43 A A A C8 N9 C4 G G G 1 1 1 N 8 4.84 0.50 113.10 117.94 A A A N7 C8 N9 G G G 2 2 2 N 8 -3.01 0.40 106.40 103.39 A A A C8 N9 C4 G G G 2 2 2 N 8 4.55 0.50 113.10 117.65 A A A N7 C8 N9 G G G 3 3 3 N 8 -2.91 0.40 106.40 103.49 A A A C8 N9 C4 G G G 3 3 3 N 8 3.83 0.50 113.80 117.63 A A A N7 C8 N9 A A A 6 6 6 N 8 -2.47 0.40 105.80 103.33 A A A C8 N9 C4 A A A 6 6 6 N 8 3.75 0.50 113.80 117.55 A A A N7 C8 N9 A A A 7 7 7 N 8 -2.43 0.40 105.80 103.37 A A A C8 N9 C4 A A A 7 7 7 N 8 5.44 0.70 108.50 113.94 A A A O4' C1' N9 G G G 9 9 9 N 8 4.46 0.50 113.10 117.56 A A A N7 C8 N9 G G G 9 9 9 N 8 -3.06 0.40 106.40 103.34 A A A C8 N9 C4 G G G 9 9 9 N 8 5.00 0.80 101.50 106.50 A A A C3' C2' C1' U U U 11 11 11 N 8 4.52 0.50 113.10 117.62 A A A N7 C8 N9 G G G 12 12 12 N 8 -2.87 0.40 106.40 103.53 A A A C8 N9 C4 G G G 12 12 12 N 8 3.67 0.50 113.80 117.47 A A A N7 C8 N9 A A A 13 13 13 N 8 -2.52 0.40 105.80 103.28 A A A C8 N9 C4 A A A 13 13 13 N 8 3.69 0.50 113.80 117.49 A A A N7 C8 N9 A A A 14 14 14 N 8 3.78 0.50 113.80 117.58 A A A N7 C8 N9 A A A 15 15 15 N 8 -2.51 0.40 105.80 103.29 A A A C8 N9 C4 A A A 15 15 15 N 8 3.80 0.50 113.80 117.60 A A A N7 C8 N9 A A A 16 16 16 N 8 -2.47 0.40 105.80 103.33 A A A C8 N9 C4 A A A 16 16 16 N 8 3.68 0.50 113.80 117.48 A A A N7 C8 N9 A A A 17 17 17 N 8 -2.43 0.40 105.80 103.37 A A A C8 N9 C4 A A A 17 17 17 N 8 3.71 0.50 113.80 117.51 A A A N7 C8 N9 A A A 20 20 20 N 8 -2.43 0.40 105.80 103.37 A A A C8 N9 C4 A A A 20 20 20 N 8 4.59 0.50 113.10 117.69 A A A N7 C8 N9 G G G 21 21 21 N 8 -2.97 0.40 106.40 103.43 A A A C8 N9 C4 G G G 21 21 21 N 9 4.61 0.50 113.10 117.71 A A A N7 C8 N9 G G G 1 1 1 N 9 -2.98 0.40 106.40 103.42 A A A C8 N9 C4 G G G 1 1 1 N 9 4.84 0.50 113.10 117.94 A A A N7 C8 N9 G G G 2 2 2 N 9 -3.00 0.40 106.40 103.40 A A A C8 N9 C4 G G G 2 2 2 N 9 4.51 0.50 113.10 117.61 A A A N7 C8 N9 G G G 3 3 3 N 9 -2.93 0.40 106.40 103.47 A A A C8 N9 C4 G G G 3 3 3 N 9 3.83 0.50 113.80 117.63 A A A N7 C8 N9 A A A 6 6 6 N 9 -2.49 0.40 105.80 103.31 A A A C8 N9 C4 A A A 6 6 6 N 9 3.81 0.50 113.80 117.61 A A A N7 C8 N9 A A A 7 7 7 N 9 -2.47 0.40 105.80 103.33 A A A C8 N9 C4 A A A 7 7 7 N 9 5.56 0.70 108.50 114.06 A A A O4' C1' N9 G G G 9 9 9 N 9 4.46 0.50 113.10 117.56 A A A N7 C8 N9 G G G 9 9 9 N 9 -3.10 0.40 106.40 103.30 A A A C8 N9 C4 G G G 9 9 9 N 9 4.55 0.50 113.10 117.65 A A A N7 C8 N9 G G G 12 12 12 N 9 -2.96 0.40 106.40 103.44 A A A C8 N9 C4 G G G 12 12 12 N 9 3.68 0.50 113.80 117.48 A A A N7 C8 N9 A A A 13 13 13 N 9 -2.54 0.40 105.80 103.26 A A A C8 N9 C4 A A A 13 13 13 N 9 3.61 0.50 113.80 117.41 A A A N7 C8 N9 A A A 14 14 14 N 9 3.72 0.50 113.80 117.52 A A A N7 C8 N9 A A A 15 15 15 N 9 -2.51 0.40 105.80 103.29 A A A C8 N9 C4 A A A 15 15 15 N 9 3.67 0.50 113.80 117.47 A A A N7 C8 N9 A A A 16 16 16 N 9 3.66 0.50 113.80 117.46 A A A N7 C8 N9 A A A 17 17 17 N 9 -2.45 0.40 105.80 103.35 A A A C8 N9 C4 A A A 17 17 17 N 9 3.85 0.50 113.80 117.65 A A A N7 C8 N9 A A A 20 20 20 N 9 -2.53 0.40 105.80 103.27 A A A C8 N9 C4 A A A 20 20 20 N 9 4.53 0.50 113.10 117.63 A A A N7 C8 N9 G G G 21 21 21 N 9 -2.89 0.40 106.40 103.51 A A A C8 N9 C4 G G G 21 21 21 N 10 4.58 0.50 113.10 117.68 A A A N7 C8 N9 G G G 1 1 1 N 10 -2.92 0.40 106.40 103.48 A A A C8 N9 C4 G G G 1 1 1 N 10 4.63 0.50 113.10 117.73 A A A N7 C8 N9 G G G 2 2 2 N 10 -2.86 0.40 106.40 103.54 A A A C8 N9 C4 G G G 2 2 2 N 10 4.51 0.50 113.10 117.61 A A A N7 C8 N9 G G G 3 3 3 N 10 -2.86 0.40 106.40 103.54 A A A C8 N9 C4 G G G 3 3 3 N 10 3.81 0.50 113.80 117.61 A A A N7 C8 N9 A A A 6 6 6 N 10 -2.48 0.40 105.80 103.32 A A A C8 N9 C4 A A A 6 6 6 N 10 3.74 0.50 113.80 117.54 A A A N7 C8 N9 A A A 7 7 7 N 10 -2.47 0.40 105.80 103.33 A A A C8 N9 C4 A A A 7 7 7 N 10 5.50 0.70 108.50 114.00 A A A O4' C1' N9 G G G 9 9 9 N 10 4.42 0.50 113.10 117.52 A A A N7 C8 N9 G G G 9 9 9 N 10 -3.00 0.40 106.40 103.40 A A A C8 N9 C4 G G G 9 9 9 N 10 4.84 0.80 101.50 106.34 A A A C3' C2' C1' U U U 11 11 11 N 10 4.49 0.50 113.10 117.59 A A A N7 C8 N9 G G G 12 12 12 N 10 -2.83 0.40 106.40 103.57 A A A C8 N9 C4 G G G 12 12 12 N 10 3.66 0.50 113.80 117.46 A A A N7 C8 N9 A A A 13 13 13 N 10 -2.53 0.40 105.80 103.27 A A A C8 N9 C4 A A A 13 13 13 N 10 3.59 0.50 113.80 117.39 A A A N7 C8 N9 A A A 14 14 14 N 10 3.79 0.50 113.80 117.59 A A A N7 C8 N9 A A A 15 15 15 N 10 -2.54 0.40 105.80 103.26 A A A C8 N9 C4 A A A 15 15 15 N 10 3.72 0.50 113.80 117.52 A A A N7 C8 N9 A A A 16 16 16 N 10 -2.44 0.40 105.80 103.36 A A A C8 N9 C4 A A A 16 16 16 N 10 3.68 0.50 113.80 117.48 A A A N7 C8 N9 A A A 17 17 17 N 10 -2.45 0.40 105.80 103.35 A A A C8 N9 C4 A A A 17 17 17 N 10 3.83 0.50 113.80 117.63 A A A N7 C8 N9 A A A 20 20 20 N 10 -2.49 0.40 105.80 103.31 A A A C8 N9 C4 A A A 20 20 20 N 10 4.56 0.50 113.10 117.66 A A A N7 C8 N9 G G G 21 21 21 N 10 -2.96 0.40 106.40 103.44 A A A C8 N9 C4 G G G 21 21 21 N 11 4.51 0.50 113.10 117.61 A A A N7 C8 N9 G G G 1 1 1 N 11 -2.91 0.40 106.40 103.49 A A A C8 N9 C4 G G G 1 1 1 N 11 4.61 0.50 113.10 117.71 A A A N7 C8 N9 G G G 2 2 2 N 11 -2.92 0.40 106.40 103.48 A A A C8 N9 C4 G G G 2 2 2 N 11 4.59 0.50 113.10 117.69 A A A N7 C8 N9 G G G 3 3 3 N 11 -2.90 0.40 106.40 103.50 A A A C8 N9 C4 G G G 3 3 3 N 11 3.80 0.50 113.80 117.60 A A A N7 C8 N9 A A A 6 6 6 N 11 -2.51 0.40 105.80 103.29 A A A C8 N9 C4 A A A 6 6 6 N 11 3.84 0.50 113.80 117.64 A A A N7 C8 N9 A A A 7 7 7 N 11 -2.54 0.40 105.80 103.26 A A A C8 N9 C4 A A A 7 7 7 N 11 5.48 0.70 108.50 113.98 A A A O4' C1' N9 G G G 9 9 9 N 11 4.41 0.50 113.10 117.51 A A A N7 C8 N9 G G G 9 9 9 N 11 -3.01 0.40 106.40 103.39 A A A C8 N9 C4 G G G 9 9 9 N 11 4.89 0.80 101.50 106.39 A A A C3' C2' C1' U U U 11 11 11 N 11 4.53 0.50 113.10 117.63 A A A N7 C8 N9 G G G 12 12 12 N 11 -2.93 0.40 106.40 103.47 A A A C8 N9 C4 G G G 12 12 12 N 11 3.65 0.50 113.80 117.45 A A A N7 C8 N9 A A A 13 13 13 N 11 -2.56 0.40 105.80 103.24 A A A C8 N9 C4 A A A 13 13 13 N 11 3.63 0.50 113.80 117.43 A A A N7 C8 N9 A A A 14 14 14 N 11 3.68 0.50 113.80 117.48 A A A N7 C8 N9 A A A 15 15 15 N 11 -2.47 0.40 105.80 103.33 A A A C8 N9 C4 A A A 15 15 15 N 11 3.75 0.50 113.80 117.55 A A A N7 C8 N9 A A A 16 16 16 N 11 3.76 0.50 113.80 117.56 A A A N7 C8 N9 A A A 17 17 17 N 11 -2.47 0.40 105.80 103.33 A A A C8 N9 C4 A A A 17 17 17 N 11 3.81 0.50 113.80 117.61 A A A N7 C8 N9 A A A 20 20 20 N 11 -2.43 0.40 105.80 103.37 A A A C8 N9 C4 A A A 20 20 20 N 11 4.60 0.50 113.10 117.70 A A A N7 C8 N9 G G G 21 21 21 N 11 -2.92 0.40 106.40 103.48 A A A C8 N9 C4 G G G 21 21 21 N closest to the average, model 1 Solution Structure of Helix-35 Stem-loop from E. coli 23S rRNA 1 N N hydrog G-C PAIR A G 1 A N1 G 1 1_555 A C 24 A N3 C 24 1_555 hydrog WATSON-CRICK A G 2 A N1 G 2 1_555 A C 23 A N3 C 23 1_555 hydrog WATSON-CRICK A G 2 A N2 G 2 1_555 A C 23 A O2 C 23 1_555 hydrog WATSON-CRICK A G 2 A O6 G 2 1_555 A C 23 A N4 C 23 1_555 hydrog G-C PAIR A G 3 A N1 G 3 1_555 A C 22 A N3 C 22 1_555 hydrog WATSON-CRICK A C 4 A N3 C 4 1_555 A G 21 A N1 G 21 1_555 hydrog WATSON-CRICK A C 4 A N4 C 4 1_555 A G 21 A O6 G 21 1_555 hydrog WATSON-CRICK A C 4 A O2 C 4 1_555 A G 21 A N2 G 21 1_555 hydrog WATSON-CRICK A U 5 A N3 U 5 1_555 A A 20 A N1 A 20 1_555 hydrog WATSON-CRICK A U 5 A O4 U 5 1_555 A A 20 A N6 A 20 1_555 hydrog WATSON-CRICK A A 6 A N1 A 6 1_555 A U 19 A N3 U 19 1_555 hydrog WATSON-CRICK A A 6 A N6 A 6 1_555 A U 19 A O4 U 19 1_555 hydrog WATSON-CRICK A A 7 A N1 A 7 1_555 A U 18 A N3 U 18 1_555 hydrog WATSON-CRICK A A 7 A N6 A 7 1_555 A U 18 A O4 U 18 1_555 hydrog G-A MISPAIR A G 9 A N2 G 9 1_555 A A 16 A N1 A 16 1_555 hydrog U-A PAIR A U 10 A O2 U 10 1_555 A A 15 A N6 A 15 1_555 hydrog U-A PAIR A U 11 A O2 U 11 1_555 A A 14 A N6 A 14 1_555 RNA ribosome, 23S rRNA, methylation, erythromycin resistance, RNA 2LV0 PDB 1 2LV0 1 24 2LV0 1 24 2LV0 A 1 1 24