1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Nikonowicz, E.P.
Wang, J.
Moran, S.
Donarski, J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
To be Published
0353
Solution Structure of Helix-35 Stem-loop from E. coli 23S rRNA
10.2210/pdb2lv0/pdb
pdb_00002lv0
7717.646
RNA (5'-R(*GP*GP*GP*CP*UP*AP*AP*UP*GP*UP*UP*GP*AP*AP*AP*AP*AP*UP*UP*AP*GP*CP*CP*C)-3')
1
syn
polymer
no
no
GGGCUAAUGUUGAAAAAUUAGCCC
GGGCUAAUGUUGAAAAAUUAGCCC
A
polyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
19.738
1
A
1
A
24
2.603
A_G1:C24_A
1
0.676
-0.131
-0.008
0.461
-4.110
1
19
A
2
A
23
-4.353
A_G2:C23_A
2
2.180
0.100
-1.077
0.101
-5.893
1
A
3
A
22
-6.048
A_G3:C22_A
3
-13.004
-0.037
-0.423
0.233
11.206
1
19
A
4
A
21
-3.482
A_C4:G21_A
4
-10.351
-0.010
-0.638
0.356
3.149
1
20
A
5
A
20
-2.035
A_U5:A20_A
5
-11.869
0.084
-0.288
0.093
-5.946
1
20
A
6
A
19
1.627
A_A6:U19_A
6
-5.307
-0.213
0.667
0.043
-11.719
1
20
A
7
A
18
-3.367
A_A7:U18_A
7
-11.142
-0.078
0.321
0.164
16.700
A
9
A
16
2.421
A_G9:A16_A
8
-0.191
1.261
-1.124
1.953
25.346
A
10
A
15
8.423
A_U10:A15_A
9
2.555
4.333
-0.426
0.013
49.404
A
11
A
14
16.535
A_U11:A14_A
10
-1.659
6.822
0.703
-4.120
3.971
32.677
A
A
1
2
26.392
A
A
24
23
5.123
14.366
-0.765
-1.491
AA_G1G2:C23C24_AA
1
0.549
-1.009
29.422
-6.302
1.500
3.416
28.029
A
A
2
3
13.826
A
A
23
22
3.937
6.630
0.127
-1.701
AA_G2G3:C22C23_AA
2
-1.984
4.137
27.178
-5.301
-0.796
3.373
29.052
A
A
3
4
-4.809
A
A
22
21
3.278
-2.409
0.133
-1.270
AA_G3C4:G21C22_AA
3
1.554
-3.102
28.914
-1.993
0.082
3.112
32.260
A
A
4
5
19.776
A
A
21
20
3.828
10.787
-0.031
-1.551
AA_C4U5:A20G21_AA
4
-0.039
0.072
30.449
-4.888
0.047
2.217
38.907
A
A
5
6
31.597
A
A
20
19
3.453
20.020
0.213
-1.402
AA_U5A6:U19A20_AA
5
-5.761
9.092
33.044
-4.401
-0.980
2.819
35.438
A
A
6
7
23.466
A
A
19
18
3.669
13.921
-0.321
-1.486
AA_A6A7:U18U19_AA
6
0.448
-0.754
32.667
-4.557
0.595
6.789
58.860
A
A
7
9
4.686
A
A
18
16
6.736
4.567
1.680
-1.864
AA_A7G9:A16U18_AA
7
13.523
-13.876
57.254
-2.392
-0.244
4.015
31.241
A
A
9
10
-7.415
A
A
16
15
4.066
-3.981
1.256
-0.479
AA_G9U10:A15A16_AA
8
-1.850
3.447
30.939
0.047
-2.767
3.182
43.074
A
A
10
11
12.933
A
A
15
14
3.215
9.423
0.765
0.052
AA_U10U11:A14A15_AA
9
1.766
-2.424
42.043
-0.849
-0.869
database_2
pdbx_database_status
pdbx_nmr_software
repository
Initial release
Data collection
Database references
Other
1
0
2013-06-26
1
1
2023-06-14
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_nmr_data
_pdbx_nmr_software.name
BMRB
Y
RCSB
2012-06-26
REL
REL
REL
REL
RNA was prepared by in vitro transcription
sample
22
345
target function
100
11
2D 1H-15N HSQC
2D 1H-13C HSQC
3D HCCH-TOCSY
3D 1H-13C NOESY
2D 1H-1H NOESY
2D DQF-COSY
2D 1H-1H NOESY
3D HCCH-COSY
2D 1H-31P HetCor
2D 1H-15N HMQC
2D 1H-13C ctHSQC-31P
2D 1H-15N HCN
3D 1H-15N NOESY
1.2
mM
[U-99% 13C; U-99% 15N]
10
mM
10
mM
0.1
mM
1.6
mM
10
mM
10
mM
0.1
mM
1.6
mM
10
mM
10
mM
0.1
mM
1.2
mM
[U-99% 13C; U-99% 15N]
10
mM
10
mM
0.1
mM
20
6.8
ambient
298
K
20
6.8
ambient
283
K
simulated annealing
1
closest to the average
1.2 mM [U-99% 13C; U-99% 15N] RNA, 10 mM potassium phosphate, 10 mM sodium chloride, 0.1 mM EDTA, 100% D2O
100% D2O
1.6 mM RNA, 10 mM potassium phosphate, 10 mM sodium chloride, 0.1 mM EDTA, 100% D2O
100% D2O
1.6 mM RNA, 10 mM potassium phosphate, 10 mM sodium chloride, 0.1 mM EDTA, 90% H2O/10% D2O
90% H2O/10% D2O
1.2 mM [U-99% 13C; U-99% 15N] RNA, 10 mM potassium phosphate, 10 mM sodium chloride, 0.1 mM EDTA, 90% H2O/10% D2O
90% H2O/10% D2O
Schwieters, Kuszewski, Tjandra and Clore
structure solution
X-PLOR NIH
Schwieters, Kuszewski, Tjandra and Clore
refinement
X-PLOR NIH
Accelrys Software Inc.
processing
Felix
Accelrys Software Inc.
refinement
Felix
Varian
collection
VNMR
Varian
refinement
VNMR
600
Varian
INOVA
Varian INOVA
500
Varian
INOVA
Varian INOVA
GUA
1
n
1
G
1
A
GUA
2
n
2
G
2
A
GUA
3
n
3
G
3
A
CYT
4
n
4
C
4
A
URI
5
n
5
U
5
A
ADE
6
n
6
A
6
A
ADE
7
n
7
A
7
A
URI
8
n
8
U
8
A
GUA
9
n
9
G
9
A
URI
10
n
10
U
10
A
URI
11
n
11
U
11
A
GUA
12
n
12
G
12
A
ADE
13
n
13
A
13
A
ADE
14
n
14
A
14
A
ADE
15
n
15
A
15
A
ADE
16
n
16
A
16
A
ADE
17
n
17
A
17
A
URI
18
n
18
U
18
A
URI
19
n
19
U
19
A
ADE
20
n
20
A
20
A
GUA
21
n
21
G
21
A
CYT
22
n
22
C
22
A
CYT
23
n
23
C
23
A
CYT
24
n
24
C
24
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
4
A
A
O2'
H8
A
A
14
15
1.58
5
A
A
O2
H62
U
A
11
14
1.59
1
4.52
0.50
113.10
117.62
A
A
A
N7
C8
N9
G
G
G
1
1
1
N
1
-2.93
0.40
106.40
103.47
A
A
A
C8
N9
C4
G
G
G
1
1
1
N
1
4.58
0.50
113.10
117.68
A
A
A
N7
C8
N9
G
G
G
2
2
2
N
1
-2.91
0.40
106.40
103.49
A
A
A
C8
N9
C4
G
G
G
2
2
2
N
1
4.52
0.50
113.10
117.62
A
A
A
N7
C8
N9
G
G
G
3
3
3
N
1
-2.88
0.40
106.40
103.52
A
A
A
C8
N9
C4
G
G
G
3
3
3
N
1
3.81
0.50
113.80
117.61
A
A
A
N7
C8
N9
A
A
A
6
6
6
N
1
-2.47
0.40
105.80
103.33
A
A
A
C8
N9
C4
A
A
A
6
6
6
N
1
3.82
0.50
113.80
117.62
A
A
A
N7
C8
N9
A
A
A
7
7
7
N
1
-2.52
0.40
105.80
103.28
A
A
A
C8
N9
C4
A
A
A
7
7
7
N
1
5.50
0.70
108.50
114.00
A
A
A
O4'
C1'
N9
G
G
G
9
9
9
N
1
4.46
0.50
113.10
117.56
A
A
A
N7
C8
N9
G
G
G
9
9
9
N
1
-3.06
0.40
106.40
103.34
A
A
A
C8
N9
C4
G
G
G
9
9
9
N
1
4.84
0.80
101.50
106.34
A
A
A
C3'
C2'
C1'
U
U
U
11
11
11
N
1
4.57
0.50
113.10
117.67
A
A
A
N7
C8
N9
G
G
G
12
12
12
N
1
-2.91
0.40
106.40
103.49
A
A
A
C8
N9
C4
G
G
G
12
12
12
N
1
3.74
0.50
113.80
117.54
A
A
A
N7
C8
N9
A
A
A
13
13
13
N
1
-2.58
0.40
105.80
103.22
A
A
A
C8
N9
C4
A
A
A
13
13
13
N
1
3.62
0.50
113.80
117.42
A
A
A
N7
C8
N9
A
A
A
14
14
14
N
1
3.84
0.50
113.80
117.64
A
A
A
N7
C8
N9
A
A
A
15
15
15
N
1
-2.49
0.40
105.80
103.31
A
A
A
C8
N9
C4
A
A
A
15
15
15
N
1
3.77
0.50
113.80
117.57
A
A
A
N7
C8
N9
A
A
A
16
16
16
N
1
-2.50
0.40
105.80
103.30
A
A
A
C8
N9
C4
A
A
A
16
16
16
N
1
3.73
0.50
113.80
117.53
A
A
A
N7
C8
N9
A
A
A
17
17
17
N
1
-2.47
0.40
105.80
103.33
A
A
A
C8
N9
C4
A
A
A
17
17
17
N
1
3.79
0.50
113.80
117.59
A
A
A
N7
C8
N9
A
A
A
20
20
20
N
1
-2.47
0.40
105.80
103.33
A
A
A
C8
N9
C4
A
A
A
20
20
20
N
1
4.57
0.50
113.10
117.67
A
A
A
N7
C8
N9
G
G
G
21
21
21
N
1
-2.92
0.40
106.40
103.48
A
A
A
C8
N9
C4
G
G
G
21
21
21
N
2
4.54
0.50
113.10
117.64
A
A
A
N7
C8
N9
G
G
G
1
1
1
N
2
-2.92
0.40
106.40
103.48
A
A
A
C8
N9
C4
G
G
G
1
1
1
N
2
4.74
0.50
113.10
117.84
A
A
A
N7
C8
N9
G
G
G
2
2
2
N
2
-2.94
0.40
106.40
103.46
A
A
A
C8
N9
C4
G
G
G
2
2
2
N
2
4.53
0.50
113.10
117.63
A
A
A
N7
C8
N9
G
G
G
3
3
3
N
2
-2.90
0.40
106.40
103.50
A
A
A
C8
N9
C4
G
G
G
3
3
3
N
2
3.77
0.50
113.80
117.57
A
A
A
N7
C8
N9
A
A
A
6
6
6
N
2
-2.43
0.40
105.80
103.37
A
A
A
C8
N9
C4
A
A
A
6
6
6
N
2
3.84
0.50
113.80
117.64
A
A
A
N7
C8
N9
A
A
A
7
7
7
N
2
-2.53
0.40
105.80
103.27
A
A
A
C8
N9
C4
A
A
A
7
7
7
N
2
5.41
0.70
108.50
113.91
A
A
A
O4'
C1'
N9
G
G
G
9
9
9
N
2
4.45
0.50
113.10
117.55
A
A
A
N7
C8
N9
G
G
G
9
9
9
N
2
-3.02
0.40
106.40
103.38
A
A
A
C8
N9
C4
G
G
G
9
9
9
N
2
4.61
0.50
113.10
117.71
A
A
A
N7
C8
N9
G
G
G
12
12
12
N
2
-2.92
0.40
106.40
103.48
A
A
A
C8
N9
C4
G
G
G
12
12
12
N
2
3.65
0.50
113.80
117.45
A
A
A
N7
C8
N9
A
A
A
13
13
13
N
2
-2.52
0.40
105.80
103.28
A
A
A
C8
N9
C4
A
A
A
13
13
13
N
2
3.62
0.50
113.80
117.42
A
A
A
N7
C8
N9
A
A
A
14
14
14
N
2
3.80
0.50
113.80
117.60
A
A
A
N7
C8
N9
A
A
A
15
15
15
N
2
-2.47
0.40
105.80
103.33
A
A
A
C8
N9
C4
A
A
A
15
15
15
N
2
3.83
0.50
113.80
117.63
A
A
A
N7
C8
N9
A
A
A
16
16
16
N
2
-2.48
0.40
105.80
103.32
A
A
A
C8
N9
C4
A
A
A
16
16
16
N
2
3.70
0.50
113.80
117.50
A
A
A
N7
C8
N9
A
A
A
17
17
17
N
2
-2.48
0.40
105.80
103.32
A
A
A
C8
N9
C4
A
A
A
17
17
17
N
2
3.68
0.50
113.80
117.48
A
A
A
N7
C8
N9
A
A
A
20
20
20
N
2
4.54
0.50
113.10
117.64
A
A
A
N7
C8
N9
G
G
G
21
21
21
N
2
-2.95
0.40
106.40
103.45
A
A
A
C8
N9
C4
G
G
G
21
21
21
N
3
4.53
0.50
113.10
117.63
A
A
A
N7
C8
N9
G
G
G
1
1
1
N
3
-2.89
0.40
106.40
103.51
A
A
A
C8
N9
C4
G
G
G
1
1
1
N
3
4.66
0.50
113.10
117.76
A
A
A
N7
C8
N9
G
G
G
2
2
2
N
3
-2.84
0.40
106.40
103.56
A
A
A
C8
N9
C4
G
G
G
2
2
2
N
3
4.54
0.50
113.10
117.64
A
A
A
N7
C8
N9
G
G
G
3
3
3
N
3
-2.88
0.40
106.40
103.52
A
A
A
C8
N9
C4
G
G
G
3
3
3
N
3
3.80
0.50
113.80
117.60
A
A
A
N7
C8
N9
A
A
A
6
6
6
N
3
-2.45
0.40
105.80
103.35
A
A
A
C8
N9
C4
A
A
A
6
6
6
N
3
3.77
0.50
113.80
117.57
A
A
A
N7
C8
N9
A
A
A
7
7
7
N
3
-2.43
0.40
105.80
103.37
A
A
A
C8
N9
C4
A
A
A
7
7
7
N
3
5.39
0.70
108.50
113.89
A
A
A
O4'
C1'
N9
G
G
G
9
9
9
N
3
4.46
0.50
113.10
117.56
A
A
A
N7
C8
N9
G
G
G
9
9
9
N
3
-3.10
0.40
106.40
103.30
A
A
A
C8
N9
C4
G
G
G
9
9
9
N
3
4.55
0.50
113.10
117.65
A
A
A
N7
C8
N9
G
G
G
12
12
12
N
3
-2.89
0.40
106.40
103.51
A
A
A
C8
N9
C4
G
G
G
12
12
12
N
3
3.61
0.50
113.80
117.41
A
A
A
N7
C8
N9
A
A
A
13
13
13
N
3
-2.52
0.40
105.80
103.28
A
A
A
C8
N9
C4
A
A
A
13
13
13
N
3
3.64
0.50
113.80
117.44
A
A
A
N7
C8
N9
A
A
A
14
14
14
N
3
3.78
0.50
113.80
117.58
A
A
A
N7
C8
N9
A
A
A
15
15
15
N
3
-2.52
0.40
105.80
103.28
A
A
A
C8
N9
C4
A
A
A
15
15
15
N
3
3.77
0.50
113.80
117.57
A
A
A
N7
C8
N9
A
A
A
16
16
16
N
3
3.73
0.50
113.80
117.53
A
A
A
N7
C8
N9
A
A
A
17
17
17
N
3
-2.50
0.40
105.80
103.30
A
A
A
C8
N9
C4
A
A
A
17
17
17
N
3
3.70
0.50
113.80
117.50
A
A
A
N7
C8
N9
A
A
A
20
20
20
N
3
4.65
0.50
113.10
117.75
A
A
A
N7
C8
N9
G
G
G
21
21
21
N
3
-2.98
0.40
106.40
103.42
A
A
A
C8
N9
C4
G
G
G
21
21
21
N
4
4.64
0.50
113.10
117.74
A
A
A
N7
C8
N9
G
G
G
1
1
1
N
4
-2.91
0.40
106.40
103.49
A
A
A
C8
N9
C4
G
G
G
1
1
1
N
4
4.65
0.50
113.10
117.75
A
A
A
N7
C8
N9
G
G
G
2
2
2
N
4
-2.90
0.40
106.40
103.50
A
A
A
C8
N9
C4
G
G
G
2
2
2
N
4
4.52
0.50
113.10
117.62
A
A
A
N7
C8
N9
G
G
G
3
3
3
N
4
-2.90
0.40
106.40
103.50
A
A
A
C8
N9
C4
G
G
G
3
3
3
N
4
3.77
0.50
113.80
117.57
A
A
A
N7
C8
N9
A
A
A
6
6
6
N
4
-2.48
0.40
105.80
103.32
A
A
A
C8
N9
C4
A
A
A
6
6
6
N
4
3.94
0.50
113.80
117.74
A
A
A
N7
C8
N9
A
A
A
7
7
7
N
4
-2.57
0.40
105.80
103.23
A
A
A
C8
N9
C4
A
A
A
7
7
7
N
4
5.43
0.70
108.50
113.93
A
A
A
O4'
C1'
N9
G
G
G
9
9
9
N
4
4.46
0.50
113.10
117.56
A
A
A
N7
C8
N9
G
G
G
9
9
9
N
4
-3.06
0.40
106.40
103.34
A
A
A
C8
N9
C4
G
G
G
9
9
9
N
4
5.02
0.80
101.50
106.52
A
A
A
C3'
C2'
C1'
U
U
U
11
11
11
N
4
4.60
0.50
113.10
117.70
A
A
A
N7
C8
N9
G
G
G
12
12
12
N
4
-2.92
0.40
106.40
103.48
A
A
A
C8
N9
C4
G
G
G
12
12
12
N
4
3.62
0.50
113.80
117.42
A
A
A
N7
C8
N9
A
A
A
13
13
13
N
4
-2.50
0.40
105.80
103.30
A
A
A
C8
N9
C4
A
A
A
13
13
13
N
4
3.63
0.50
113.80
117.43
A
A
A
N7
C8
N9
A
A
A
14
14
14
N
4
-2.41
0.40
105.80
103.39
A
A
A
C8
N9
C4
A
A
A
14
14
14
N
4
3.85
0.50
113.80
117.65
A
A
A
N7
C8
N9
A
A
A
15
15
15
N
4
-2.54
0.40
105.80
103.26
A
A
A
C8
N9
C4
A
A
A
15
15
15
N
4
3.74
0.50
113.80
117.54
A
A
A
N7
C8
N9
A
A
A
16
16
16
N
4
-2.51
0.40
105.80
103.29
A
A
A
C8
N9
C4
A
A
A
16
16
16
N
4
3.76
0.50
113.80
117.56
A
A
A
N7
C8
N9
A
A
A
17
17
17
N
4
-2.54
0.40
105.80
103.26
A
A
A
C8
N9
C4
A
A
A
17
17
17
N
4
3.80
0.50
113.80
117.60
A
A
A
N7
C8
N9
A
A
A
20
20
20
N
4
-2.46
0.40
105.80
103.34
A
A
A
C8
N9
C4
A
A
A
20
20
20
N
4
4.57
0.50
113.10
117.67
A
A
A
N7
C8
N9
G
G
G
21
21
21
N
4
-2.92
0.40
106.40
103.48
A
A
A
C8
N9
C4
G
G
G
21
21
21
N
5
4.52
0.50
113.10
117.62
A
A
A
N7
C8
N9
G
G
G
1
1
1
N
5
-2.92
0.40
106.40
103.48
A
A
A
C8
N9
C4
G
G
G
1
1
1
N
5
4.58
0.50
113.10
117.68
A
A
A
N7
C8
N9
G
G
G
2
2
2
N
5
-2.86
0.40
106.40
103.54
A
A
A
C8
N9
C4
G
G
G
2
2
2
N
5
4.54
0.50
113.10
117.64
A
A
A
N7
C8
N9
G
G
G
3
3
3
N
5
-2.93
0.40
106.40
103.47
A
A
A
C8
N9
C4
G
G
G
3
3
3
N
5
3.83
0.50
113.80
117.63
A
A
A
N7
C8
N9
A
A
A
6
6
6
N
5
-2.53
0.40
105.80
103.27
A
A
A
C8
N9
C4
A
A
A
6
6
6
N
5
3.79
0.50
113.80
117.59
A
A
A
N7
C8
N9
A
A
A
7
7
7
N
5
-2.53
0.40
105.80
103.27
A
A
A
C8
N9
C4
A
A
A
7
7
7
N
5
5.54
0.70
108.50
114.04
A
A
A
O4'
C1'
N9
G
G
G
9
9
9
N
5
4.44
0.50
113.10
117.54
A
A
A
N7
C8
N9
G
G
G
9
9
9
N
5
-3.02
0.40
106.40
103.38
A
A
A
C8
N9
C4
G
G
G
9
9
9
N
5
4.58
0.50
113.10
117.68
A
A
A
N7
C8
N9
G
G
G
12
12
12
N
5
-2.92
0.40
106.40
103.48
A
A
A
C8
N9
C4
G
G
G
12
12
12
N
5
3.63
0.50
113.80
117.43
A
A
A
N7
C8
N9
A
A
A
13
13
13
N
5
-2.48
0.40
105.80
103.32
A
A
A
C8
N9
C4
A
A
A
13
13
13
N
5
3.69
0.50
113.80
117.49
A
A
A
N7
C8
N9
A
A
A
14
14
14
N
5
-2.44
0.40
105.80
103.36
A
A
A
C8
N9
C4
A
A
A
14
14
14
N
5
3.69
0.50
113.80
117.49
A
A
A
N7
C8
N9
A
A
A
15
15
15
N
5
-2.41
0.40
105.80
103.39
A
A
A
C8
N9
C4
A
A
A
15
15
15
N
5
3.76
0.50
113.80
117.56
A
A
A
N7
C8
N9
A
A
A
16
16
16
N
5
-2.42
0.40
105.80
103.38
A
A
A
C8
N9
C4
A
A
A
16
16
16
N
5
3.73
0.50
113.80
117.53
A
A
A
N7
C8
N9
A
A
A
17
17
17
N
5
-2.47
0.40
105.80
103.33
A
A
A
C8
N9
C4
A
A
A
17
17
17
N
5
3.81
0.50
113.80
117.61
A
A
A
N7
C8
N9
A
A
A
20
20
20
N
5
-2.45
0.40
105.80
103.35
A
A
A
C8
N9
C4
A
A
A
20
20
20
N
5
4.65
0.50
113.10
117.75
A
A
A
N7
C8
N9
G
G
G
21
21
21
N
5
-2.93
0.40
106.40
103.47
A
A
A
C8
N9
C4
G
G
G
21
21
21
N
6
4.49
0.50
113.10
117.59
A
A
A
N7
C8
N9
G
G
G
1
1
1
N
6
-2.87
0.40
106.40
103.53
A
A
A
C8
N9
C4
G
G
G
1
1
1
N
6
4.64
0.50
113.10
117.74
A
A
A
N7
C8
N9
G
G
G
2
2
2
N
6
-2.90
0.40
106.40
103.50
A
A
A
C8
N9
C4
G
G
G
2
2
2
N
6
4.56
0.50
113.10
117.66
A
A
A
N7
C8
N9
G
G
G
3
3
3
N
6
-2.89
0.40
106.40
103.51
A
A
A
C8
N9
C4
G
G
G
3
3
3
N
6
3.73
0.50
113.80
117.53
A
A
A
N7
C8
N9
A
A
A
6
6
6
N
6
3.80
0.50
113.80
117.60
A
A
A
N7
C8
N9
A
A
A
7
7
7
N
6
-2.50
0.40
105.80
103.30
A
A
A
C8
N9
C4
A
A
A
7
7
7
N
6
5.39
0.70
108.50
113.89
A
A
A
O4'
C1'
N9
G
G
G
9
9
9
N
6
4.45
0.50
113.10
117.55
A
A
A
N7
C8
N9
G
G
G
9
9
9
N
6
-3.04
0.40
106.40
103.36
A
A
A
C8
N9
C4
G
G
G
9
9
9
N
6
4.86
0.80
101.50
106.36
A
A
A
C3'
C2'
C1'
U
U
U
11
11
11
N
6
4.54
0.50
113.10
117.64
A
A
A
N7
C8
N9
G
G
G
12
12
12
N
6
-2.84
0.40
106.40
103.56
A
A
A
C8
N9
C4
G
G
G
12
12
12
N
6
3.67
0.50
113.80
117.47
A
A
A
N7
C8
N9
A
A
A
13
13
13
N
6
-2.51
0.40
105.80
103.29
A
A
A
C8
N9
C4
A
A
A
13
13
13
N
6
3.64
0.50
113.80
117.44
A
A
A
N7
C8
N9
A
A
A
14
14
14
N
6
3.72
0.50
113.80
117.52
A
A
A
N7
C8
N9
A
A
A
15
15
15
N
6
-2.43
0.40
105.80
103.37
A
A
A
C8
N9
C4
A
A
A
15
15
15
N
6
3.76
0.50
113.80
117.56
A
A
A
N7
C8
N9
A
A
A
16
16
16
N
6
-2.42
0.40
105.80
103.38
A
A
A
C8
N9
C4
A
A
A
16
16
16
N
6
3.72
0.50
113.80
117.52
A
A
A
N7
C8
N9
A
A
A
17
17
17
N
6
-2.50
0.40
105.80
103.30
A
A
A
C8
N9
C4
A
A
A
17
17
17
N
6
3.77
0.50
113.80
117.57
A
A
A
N7
C8
N9
A
A
A
20
20
20
N
6
-2.46
0.40
105.80
103.34
A
A
A
C8
N9
C4
A
A
A
20
20
20
N
6
4.53
0.50
113.10
117.63
A
A
A
N7
C8
N9
G
G
G
21
21
21
N
6
-2.93
0.40
106.40
103.47
A
A
A
C8
N9
C4
G
G
G
21
21
21
N
7
4.44
0.50
113.10
117.54
A
A
A
N7
C8
N9
G
G
G
1
1
1
N
7
-2.82
0.40
106.40
103.58
A
A
A
C8
N9
C4
G
G
G
1
1
1
N
7
4.63
0.50
113.10
117.73
A
A
A
N7
C8
N9
G
G
G
2
2
2
N
7
-2.89
0.40
106.40
103.51
A
A
A
C8
N9
C4
G
G
G
2
2
2
N
7
4.52
0.50
113.10
117.62
A
A
A
N7
C8
N9
G
G
G
3
3
3
N
7
-2.90
0.40
106.40
103.50
A
A
A
C8
N9
C4
G
G
G
3
3
3
N
7
3.79
0.50
113.80
117.59
A
A
A
N7
C8
N9
A
A
A
6
6
6
N
7
-2.45
0.40
105.80
103.35
A
A
A
C8
N9
C4
A
A
A
6
6
6
N
7
3.84
0.50
113.80
117.64
A
A
A
N7
C8
N9
A
A
A
7
7
7
N
7
-2.46
0.40
105.80
103.34
A
A
A
C8
N9
C4
A
A
A
7
7
7
N
7
5.53
0.70
108.50
114.03
A
A
A
O4'
C1'
N9
G
G
G
9
9
9
N
7
4.42
0.50
113.10
117.52
A
A
A
N7
C8
N9
G
G
G
9
9
9
N
7
-3.00
0.40
106.40
103.40
A
A
A
C8
N9
C4
G
G
G
9
9
9
N
7
4.87
0.80
101.50
106.37
A
A
A
C3'
C2'
C1'
U
U
U
11
11
11
N
7
4.60
0.50
113.10
117.70
A
A
A
N7
C8
N9
G
G
G
12
12
12
N
7
-2.91
0.40
106.40
103.49
A
A
A
C8
N9
C4
G
G
G
12
12
12
N
7
3.64
0.50
113.80
117.44
A
A
A
N7
C8
N9
A
A
A
13
13
13
N
7
-2.52
0.40
105.80
103.28
A
A
A
C8
N9
C4
A
A
A
13
13
13
N
7
3.67
0.50
113.80
117.47
A
A
A
N7
C8
N9
A
A
A
14
14
14
N
7
3.82
0.50
113.80
117.62
A
A
A
N7
C8
N9
A
A
A
15
15
15
N
7
-2.54
0.40
105.80
103.26
A
A
A
C8
N9
C4
A
A
A
15
15
15
N
7
3.78
0.50
113.80
117.58
A
A
A
N7
C8
N9
A
A
A
16
16
16
N
7
3.72
0.50
113.80
117.52
A
A
A
N7
C8
N9
A
A
A
17
17
17
N
7
-2.46
0.40
105.80
103.34
A
A
A
C8
N9
C4
A
A
A
17
17
17
N
7
3.75
0.50
113.80
117.55
A
A
A
N7
C8
N9
A
A
A
20
20
20
N
7
-2.40
0.40
105.80
103.40
A
A
A
C8
N9
C4
A
A
A
20
20
20
N
7
4.51
0.50
113.10
117.61
A
A
A
N7
C8
N9
G
G
G
21
21
21
N
7
-2.87
0.40
106.40
103.53
A
A
A
C8
N9
C4
G
G
G
21
21
21
N
8
4.61
0.50
113.10
117.71
A
A
A
N7
C8
N9
G
G
G
1
1
1
N
8
-2.97
0.40
106.40
103.43
A
A
A
C8
N9
C4
G
G
G
1
1
1
N
8
4.84
0.50
113.10
117.94
A
A
A
N7
C8
N9
G
G
G
2
2
2
N
8
-3.01
0.40
106.40
103.39
A
A
A
C8
N9
C4
G
G
G
2
2
2
N
8
4.55
0.50
113.10
117.65
A
A
A
N7
C8
N9
G
G
G
3
3
3
N
8
-2.91
0.40
106.40
103.49
A
A
A
C8
N9
C4
G
G
G
3
3
3
N
8
3.83
0.50
113.80
117.63
A
A
A
N7
C8
N9
A
A
A
6
6
6
N
8
-2.47
0.40
105.80
103.33
A
A
A
C8
N9
C4
A
A
A
6
6
6
N
8
3.75
0.50
113.80
117.55
A
A
A
N7
C8
N9
A
A
A
7
7
7
N
8
-2.43
0.40
105.80
103.37
A
A
A
C8
N9
C4
A
A
A
7
7
7
N
8
5.44
0.70
108.50
113.94
A
A
A
O4'
C1'
N9
G
G
G
9
9
9
N
8
4.46
0.50
113.10
117.56
A
A
A
N7
C8
N9
G
G
G
9
9
9
N
8
-3.06
0.40
106.40
103.34
A
A
A
C8
N9
C4
G
G
G
9
9
9
N
8
5.00
0.80
101.50
106.50
A
A
A
C3'
C2'
C1'
U
U
U
11
11
11
N
8
4.52
0.50
113.10
117.62
A
A
A
N7
C8
N9
G
G
G
12
12
12
N
8
-2.87
0.40
106.40
103.53
A
A
A
C8
N9
C4
G
G
G
12
12
12
N
8
3.67
0.50
113.80
117.47
A
A
A
N7
C8
N9
A
A
A
13
13
13
N
8
-2.52
0.40
105.80
103.28
A
A
A
C8
N9
C4
A
A
A
13
13
13
N
8
3.69
0.50
113.80
117.49
A
A
A
N7
C8
N9
A
A
A
14
14
14
N
8
3.78
0.50
113.80
117.58
A
A
A
N7
C8
N9
A
A
A
15
15
15
N
8
-2.51
0.40
105.80
103.29
A
A
A
C8
N9
C4
A
A
A
15
15
15
N
8
3.80
0.50
113.80
117.60
A
A
A
N7
C8
N9
A
A
A
16
16
16
N
8
-2.47
0.40
105.80
103.33
A
A
A
C8
N9
C4
A
A
A
16
16
16
N
8
3.68
0.50
113.80
117.48
A
A
A
N7
C8
N9
A
A
A
17
17
17
N
8
-2.43
0.40
105.80
103.37
A
A
A
C8
N9
C4
A
A
A
17
17
17
N
8
3.71
0.50
113.80
117.51
A
A
A
N7
C8
N9
A
A
A
20
20
20
N
8
-2.43
0.40
105.80
103.37
A
A
A
C8
N9
C4
A
A
A
20
20
20
N
8
4.59
0.50
113.10
117.69
A
A
A
N7
C8
N9
G
G
G
21
21
21
N
8
-2.97
0.40
106.40
103.43
A
A
A
C8
N9
C4
G
G
G
21
21
21
N
9
4.61
0.50
113.10
117.71
A
A
A
N7
C8
N9
G
G
G
1
1
1
N
9
-2.98
0.40
106.40
103.42
A
A
A
C8
N9
C4
G
G
G
1
1
1
N
9
4.84
0.50
113.10
117.94
A
A
A
N7
C8
N9
G
G
G
2
2
2
N
9
-3.00
0.40
106.40
103.40
A
A
A
C8
N9
C4
G
G
G
2
2
2
N
9
4.51
0.50
113.10
117.61
A
A
A
N7
C8
N9
G
G
G
3
3
3
N
9
-2.93
0.40
106.40
103.47
A
A
A
C8
N9
C4
G
G
G
3
3
3
N
9
3.83
0.50
113.80
117.63
A
A
A
N7
C8
N9
A
A
A
6
6
6
N
9
-2.49
0.40
105.80
103.31
A
A
A
C8
N9
C4
A
A
A
6
6
6
N
9
3.81
0.50
113.80
117.61
A
A
A
N7
C8
N9
A
A
A
7
7
7
N
9
-2.47
0.40
105.80
103.33
A
A
A
C8
N9
C4
A
A
A
7
7
7
N
9
5.56
0.70
108.50
114.06
A
A
A
O4'
C1'
N9
G
G
G
9
9
9
N
9
4.46
0.50
113.10
117.56
A
A
A
N7
C8
N9
G
G
G
9
9
9
N
9
-3.10
0.40
106.40
103.30
A
A
A
C8
N9
C4
G
G
G
9
9
9
N
9
4.55
0.50
113.10
117.65
A
A
A
N7
C8
N9
G
G
G
12
12
12
N
9
-2.96
0.40
106.40
103.44
A
A
A
C8
N9
C4
G
G
G
12
12
12
N
9
3.68
0.50
113.80
117.48
A
A
A
N7
C8
N9
A
A
A
13
13
13
N
9
-2.54
0.40
105.80
103.26
A
A
A
C8
N9
C4
A
A
A
13
13
13
N
9
3.61
0.50
113.80
117.41
A
A
A
N7
C8
N9
A
A
A
14
14
14
N
9
3.72
0.50
113.80
117.52
A
A
A
N7
C8
N9
A
A
A
15
15
15
N
9
-2.51
0.40
105.80
103.29
A
A
A
C8
N9
C4
A
A
A
15
15
15
N
9
3.67
0.50
113.80
117.47
A
A
A
N7
C8
N9
A
A
A
16
16
16
N
9
3.66
0.50
113.80
117.46
A
A
A
N7
C8
N9
A
A
A
17
17
17
N
9
-2.45
0.40
105.80
103.35
A
A
A
C8
N9
C4
A
A
A
17
17
17
N
9
3.85
0.50
113.80
117.65
A
A
A
N7
C8
N9
A
A
A
20
20
20
N
9
-2.53
0.40
105.80
103.27
A
A
A
C8
N9
C4
A
A
A
20
20
20
N
9
4.53
0.50
113.10
117.63
A
A
A
N7
C8
N9
G
G
G
21
21
21
N
9
-2.89
0.40
106.40
103.51
A
A
A
C8
N9
C4
G
G
G
21
21
21
N
10
4.58
0.50
113.10
117.68
A
A
A
N7
C8
N9
G
G
G
1
1
1
N
10
-2.92
0.40
106.40
103.48
A
A
A
C8
N9
C4
G
G
G
1
1
1
N
10
4.63
0.50
113.10
117.73
A
A
A
N7
C8
N9
G
G
G
2
2
2
N
10
-2.86
0.40
106.40
103.54
A
A
A
C8
N9
C4
G
G
G
2
2
2
N
10
4.51
0.50
113.10
117.61
A
A
A
N7
C8
N9
G
G
G
3
3
3
N
10
-2.86
0.40
106.40
103.54
A
A
A
C8
N9
C4
G
G
G
3
3
3
N
10
3.81
0.50
113.80
117.61
A
A
A
N7
C8
N9
A
A
A
6
6
6
N
10
-2.48
0.40
105.80
103.32
A
A
A
C8
N9
C4
A
A
A
6
6
6
N
10
3.74
0.50
113.80
117.54
A
A
A
N7
C8
N9
A
A
A
7
7
7
N
10
-2.47
0.40
105.80
103.33
A
A
A
C8
N9
C4
A
A
A
7
7
7
N
10
5.50
0.70
108.50
114.00
A
A
A
O4'
C1'
N9
G
G
G
9
9
9
N
10
4.42
0.50
113.10
117.52
A
A
A
N7
C8
N9
G
G
G
9
9
9
N
10
-3.00
0.40
106.40
103.40
A
A
A
C8
N9
C4
G
G
G
9
9
9
N
10
4.84
0.80
101.50
106.34
A
A
A
C3'
C2'
C1'
U
U
U
11
11
11
N
10
4.49
0.50
113.10
117.59
A
A
A
N7
C8
N9
G
G
G
12
12
12
N
10
-2.83
0.40
106.40
103.57
A
A
A
C8
N9
C4
G
G
G
12
12
12
N
10
3.66
0.50
113.80
117.46
A
A
A
N7
C8
N9
A
A
A
13
13
13
N
10
-2.53
0.40
105.80
103.27
A
A
A
C8
N9
C4
A
A
A
13
13
13
N
10
3.59
0.50
113.80
117.39
A
A
A
N7
C8
N9
A
A
A
14
14
14
N
10
3.79
0.50
113.80
117.59
A
A
A
N7
C8
N9
A
A
A
15
15
15
N
10
-2.54
0.40
105.80
103.26
A
A
A
C8
N9
C4
A
A
A
15
15
15
N
10
3.72
0.50
113.80
117.52
A
A
A
N7
C8
N9
A
A
A
16
16
16
N
10
-2.44
0.40
105.80
103.36
A
A
A
C8
N9
C4
A
A
A
16
16
16
N
10
3.68
0.50
113.80
117.48
A
A
A
N7
C8
N9
A
A
A
17
17
17
N
10
-2.45
0.40
105.80
103.35
A
A
A
C8
N9
C4
A
A
A
17
17
17
N
10
3.83
0.50
113.80
117.63
A
A
A
N7
C8
N9
A
A
A
20
20
20
N
10
-2.49
0.40
105.80
103.31
A
A
A
C8
N9
C4
A
A
A
20
20
20
N
10
4.56
0.50
113.10
117.66
A
A
A
N7
C8
N9
G
G
G
21
21
21
N
10
-2.96
0.40
106.40
103.44
A
A
A
C8
N9
C4
G
G
G
21
21
21
N
11
4.51
0.50
113.10
117.61
A
A
A
N7
C8
N9
G
G
G
1
1
1
N
11
-2.91
0.40
106.40
103.49
A
A
A
C8
N9
C4
G
G
G
1
1
1
N
11
4.61
0.50
113.10
117.71
A
A
A
N7
C8
N9
G
G
G
2
2
2
N
11
-2.92
0.40
106.40
103.48
A
A
A
C8
N9
C4
G
G
G
2
2
2
N
11
4.59
0.50
113.10
117.69
A
A
A
N7
C8
N9
G
G
G
3
3
3
N
11
-2.90
0.40
106.40
103.50
A
A
A
C8
N9
C4
G
G
G
3
3
3
N
11
3.80
0.50
113.80
117.60
A
A
A
N7
C8
N9
A
A
A
6
6
6
N
11
-2.51
0.40
105.80
103.29
A
A
A
C8
N9
C4
A
A
A
6
6
6
N
11
3.84
0.50
113.80
117.64
A
A
A
N7
C8
N9
A
A
A
7
7
7
N
11
-2.54
0.40
105.80
103.26
A
A
A
C8
N9
C4
A
A
A
7
7
7
N
11
5.48
0.70
108.50
113.98
A
A
A
O4'
C1'
N9
G
G
G
9
9
9
N
11
4.41
0.50
113.10
117.51
A
A
A
N7
C8
N9
G
G
G
9
9
9
N
11
-3.01
0.40
106.40
103.39
A
A
A
C8
N9
C4
G
G
G
9
9
9
N
11
4.89
0.80
101.50
106.39
A
A
A
C3'
C2'
C1'
U
U
U
11
11
11
N
11
4.53
0.50
113.10
117.63
A
A
A
N7
C8
N9
G
G
G
12
12
12
N
11
-2.93
0.40
106.40
103.47
A
A
A
C8
N9
C4
G
G
G
12
12
12
N
11
3.65
0.50
113.80
117.45
A
A
A
N7
C8
N9
A
A
A
13
13
13
N
11
-2.56
0.40
105.80
103.24
A
A
A
C8
N9
C4
A
A
A
13
13
13
N
11
3.63
0.50
113.80
117.43
A
A
A
N7
C8
N9
A
A
A
14
14
14
N
11
3.68
0.50
113.80
117.48
A
A
A
N7
C8
N9
A
A
A
15
15
15
N
11
-2.47
0.40
105.80
103.33
A
A
A
C8
N9
C4
A
A
A
15
15
15
N
11
3.75
0.50
113.80
117.55
A
A
A
N7
C8
N9
A
A
A
16
16
16
N
11
3.76
0.50
113.80
117.56
A
A
A
N7
C8
N9
A
A
A
17
17
17
N
11
-2.47
0.40
105.80
103.33
A
A
A
C8
N9
C4
A
A
A
17
17
17
N
11
3.81
0.50
113.80
117.61
A
A
A
N7
C8
N9
A
A
A
20
20
20
N
11
-2.43
0.40
105.80
103.37
A
A
A
C8
N9
C4
A
A
A
20
20
20
N
11
4.60
0.50
113.10
117.70
A
A
A
N7
C8
N9
G
G
G
21
21
21
N
11
-2.92
0.40
106.40
103.48
A
A
A
C8
N9
C4
G
G
G
21
21
21
N
closest to the average, model 1
Solution Structure of Helix-35 Stem-loop from E. coli 23S rRNA
1
N
N
hydrog
G-C PAIR
A
G
1
A
N1
G
1
1_555
A
C
24
A
N3
C
24
1_555
hydrog
WATSON-CRICK
A
G
2
A
N1
G
2
1_555
A
C
23
A
N3
C
23
1_555
hydrog
WATSON-CRICK
A
G
2
A
N2
G
2
1_555
A
C
23
A
O2
C
23
1_555
hydrog
WATSON-CRICK
A
G
2
A
O6
G
2
1_555
A
C
23
A
N4
C
23
1_555
hydrog
G-C PAIR
A
G
3
A
N1
G
3
1_555
A
C
22
A
N3
C
22
1_555
hydrog
WATSON-CRICK
A
C
4
A
N3
C
4
1_555
A
G
21
A
N1
G
21
1_555
hydrog
WATSON-CRICK
A
C
4
A
N4
C
4
1_555
A
G
21
A
O6
G
21
1_555
hydrog
WATSON-CRICK
A
C
4
A
O2
C
4
1_555
A
G
21
A
N2
G
21
1_555
hydrog
WATSON-CRICK
A
U
5
A
N3
U
5
1_555
A
A
20
A
N1
A
20
1_555
hydrog
WATSON-CRICK
A
U
5
A
O4
U
5
1_555
A
A
20
A
N6
A
20
1_555
hydrog
WATSON-CRICK
A
A
6
A
N1
A
6
1_555
A
U
19
A
N3
U
19
1_555
hydrog
WATSON-CRICK
A
A
6
A
N6
A
6
1_555
A
U
19
A
O4
U
19
1_555
hydrog
WATSON-CRICK
A
A
7
A
N1
A
7
1_555
A
U
18
A
N3
U
18
1_555
hydrog
WATSON-CRICK
A
A
7
A
N6
A
7
1_555
A
U
18
A
O4
U
18
1_555
hydrog
G-A MISPAIR
A
G
9
A
N2
G
9
1_555
A
A
16
A
N1
A
16
1_555
hydrog
U-A PAIR
A
U
10
A
O2
U
10
1_555
A
A
15
A
N6
A
15
1_555
hydrog
U-A PAIR
A
U
11
A
O2
U
11
1_555
A
A
14
A
N6
A
14
1_555
RNA
ribosome, 23S rRNA, methylation, erythromycin resistance, RNA
2LV0
PDB
1
2LV0
1
24
2LV0
1
24
2LV0
A
1
1
24