1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Liu, G. Koga, N. Koga, R. Xiao, R. Hamilton, K. Kohan, E. Acton, T.B. Kornhaber, G. Everett, J.K. Baker, D. Montelione, G.T. Northeast Structural Genomics Consortium (NESG) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK Nature NATUAS 0006 0028-0836 491 222 227 10.1038/nature11600 23135467 Principles for designing ideal protein structures. 2012 10.2210/pdb2lvb/pdb pdb_00002lvb 12671.152 DE NOVO DESIGNED PFK fold PROTEIN 1 man polymer no no MGKVLLVISTDTNIISSVQERAKHNYPGREIRTATSSQDIRDIIKSMKDNGKPLVVFVNGASQNDVNEFQNEAKKEGVSY DVLKSTDPEELTQRVREFLKTAGSLEHHHHHH MGKVLLVISTDTNIISSVQERAKHNYPGREIRTATSSQDIRDIIKSMKDNGKPLVVFVNGASQNDVNEFQNEAKKEGVSY DVLKSTDPEELTQRVREFLKTAGSLEHHHHHH A NESG-OR250 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample 32630 artificial gene 562 Escherichia coli BL21(DE3)pMgK pET29b+ Northeast Structural Genomics Consortium NESG PSI:Biology database_2 pdbx_database_status pdbx_nmr_software pdbx_nmr_spectrometer repository Initial release Database references Database references Database references Data collection Database references Other 1 0 2012-08-08 1 1 2012-10-31 1 2 2012-11-07 1 3 2013-01-23 1 4 2023-06-14 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.status_code_nmr_data _pdbx_nmr_software.name _pdbx_nmr_spectrometer.model Y BMRB Y RCSB 2012-06-30 REL REL REL REL target function 100 20 2D 1H-15N HSQC 2D 1H-13C HSQC 3D HNCO 3D CBCA(CO)NH 3D HNCACB 3D 1H-13C arom NOESY 3D simutaneous 13C-aromatic,13C-aliphatic,15N edited 1H-1H NOESY 3D HCCH-TOCSY 2D 1H-13C HSQC 0.784 mM [U-100% 13C; U-100% 15N] 100 mM 5 mM 0.02 % 10 mM 0.854 mM [U-100% 13C; U-100% 15N] 100 mM 5 mM 0.02 % 10 mM 6.5 ambient 298 K distance geometry, simulated annealing, torsion angle dynamics, molecular dynamics 1 lowest energy 0.784 mM [U-100% 13C; U-100% 15N] OR250.001, 100 mM NaCl, 5 mM DTT, 0.02 % NaN3, 10 mM Tris-HCl pH 7.5, 90% H2O/10% D2O 90% H2O/10% D2O 0.854 mM [U-100% 13C; U-100% 15N] OR250.003, 100 mM NaCl, 5 mM DTT, 0.02 % NaN3, 10 mM Tris-HCl pH 7.5, 90% H2O/10% D2O 90% H2O/10% D2O Brunger, Adams, Clore, Gros, Nilges and Read refinement CNS Brunger, Adams, Clore, Gros, Nilges and Read structure solution CNS Brunger, Adams, Clore, Gros, Nilges and Read geometry optimization CNS Guntert, Mumenthaler and Wuthrich refinement CYANA 3.0 Guntert, Mumenthaler and Wuthrich geometry optimization CYANA 3.0 Guntert, Mumenthaler and Wuthrich structure solution CYANA 3.0 Huang, Tejero, Powers and Montelione data analysis AutoStructure 2.1 Huang, Tejero, Powers and Montelione refinement AutoStructure 2.1 Zimmerman, Moseley, Kulikowski and Montelione data analysis AutoAssign 2.1 Zimmerman, Moseley, Kulikowski and Montelione chemical shift assignment AutoAssign 2.1 Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax processing NMRPipe Bartels et al. data analysis XEASY Bartels et al. peak picking XEASY Bartels et al. chemical shift assignment XEASY Bruker Biospin collection TopSpin Varian collection VnmrJ Goddard data analysis Sparky Shen, Cornilescu, Delaglio and Bax geometry optimization TALOS+ Bhattacharya, Montelione structure validation PSVS 800 Bruker AVANCE Bruker Avance 600 Varian INOVA Varian INOVA MET 1 n 1 MET 1 A GLY 2 n 2 GLY 2 A LYS 3 n 3 LYS 3 A VAL 4 n 4 VAL 4 A LEU 5 n 5 LEU 5 A LEU 6 n 6 LEU 6 A VAL 7 n 7 VAL 7 A ILE 8 n 8 ILE 8 A SER 9 n 9 SER 9 A THR 10 n 10 THR 10 A ASP 11 n 11 ASP 11 A THR 12 n 12 THR 12 A ASN 13 n 13 ASN 13 A ILE 14 n 14 ILE 14 A ILE 15 n 15 ILE 15 A SER 16 n 16 SER 16 A SER 17 n 17 SER 17 A VAL 18 n 18 VAL 18 A GLN 19 n 19 GLN 19 A GLU 20 n 20 GLU 20 A ARG 21 n 21 ARG 21 A ALA 22 n 22 ALA 22 A LYS 23 n 23 LYS 23 A HIS 24 n 24 HIS 24 A ASN 25 n 25 ASN 25 A TYR 26 n 26 TYR 26 A PRO 27 n 27 PRO 27 A GLY 28 n 28 GLY 28 A ARG 29 n 29 ARG 29 A GLU 30 n 30 GLU 30 A ILE 31 n 31 ILE 31 A ARG 32 n 32 ARG 32 A THR 33 n 33 THR 33 A ALA 34 n 34 ALA 34 A THR 35 n 35 THR 35 A SER 36 n 36 SER 36 A SER 37 n 37 SER 37 A GLN 38 n 38 GLN 38 A ASP 39 n 39 ASP 39 A ILE 40 n 40 ILE 40 A ARG 41 n 41 ARG 41 A ASP 42 n 42 ASP 42 A ILE 43 n 43 ILE 43 A ILE 44 n 44 ILE 44 A LYS 45 n 45 LYS 45 A SER 46 n 46 SER 46 A MET 47 n 47 MET 47 A LYS 48 n 48 LYS 48 A ASP 49 n 49 ASP 49 A ASN 50 n 50 ASN 50 A GLY 51 n 51 GLY 51 A LYS 52 n 52 LYS 52 A PRO 53 n 53 PRO 53 A LEU 54 n 54 LEU 54 A VAL 55 n 55 VAL 55 A VAL 56 n 56 VAL 56 A PHE 57 n 57 PHE 57 A VAL 58 n 58 VAL 58 A ASN 59 n 59 ASN 59 A GLY 60 n 60 GLY 60 A ALA 61 n 61 ALA 61 A SER 62 n 62 SER 62 A GLN 63 n 63 GLN 63 A ASN 64 n 64 ASN 64 A ASP 65 n 65 ASP 65 A VAL 66 n 66 VAL 66 A ASN 67 n 67 ASN 67 A GLU 68 n 68 GLU 68 A PHE 69 n 69 PHE 69 A GLN 70 n 70 GLN 70 A ASN 71 n 71 ASN 71 A GLU 72 n 72 GLU 72 A ALA 73 n 73 ALA 73 A LYS 74 n 74 LYS 74 A LYS 75 n 75 LYS 75 A GLU 76 n 76 GLU 76 A GLY 77 n 77 GLY 77 A VAL 78 n 78 VAL 78 A SER 79 n 79 SER 79 A TYR 80 n 80 TYR 80 A ASP 81 n 81 ASP 81 A VAL 82 n 82 VAL 82 A LEU 83 n 83 LEU 83 A LYS 84 n 84 LYS 84 A SER 85 n 85 SER 85 A THR 86 n 86 THR 86 A ASP 87 n 87 ASP 87 A PRO 88 n 88 PRO 88 A GLU 89 n 89 GLU 89 A GLU 90 n 90 GLU 90 A LEU 91 n 91 LEU 91 A THR 92 n 92 THR 92 A GLN 93 n 93 GLN 93 A ARG 94 n 94 ARG 94 A VAL 95 n 95 VAL 95 A ARG 96 n 96 ARG 96 A GLU 97 n 97 GLU 97 A PHE 98 n 98 PHE 98 A LEU 99 n 99 LEU 99 A LYS 100 n 100 LYS 100 A THR 101 n 101 THR 101 A ALA 102 n 102 ALA 102 A GLY 103 n 103 GLY 103 A SER 104 n 104 SER 104 A LEU 105 n 105 LEU 105 A GLU 106 n 106 GLU 106 A HIS 107 n 107 HIS 107 A HIS 108 n 108 HIS 108 A HIS 109 n 109 HIS 109 A HIS 110 n 110 HIS 110 A HIS 111 n 111 HIS 111 A HIS 112 n 112 HIS 112 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ARG 32 A N ARG 32 A O PHE 57 A O PHE 57 A O VAL 58 A O VAL 58 A N VAL 7 A N VAL 7 A N LEU 6 A N LEU 6 A O LEU 83 A O LEU 83 1 A ASN 50 -147.14 -61.61 1 A PRO 53 -62.44 97.10 1 A SER 104 -162.64 91.05 1 A HIS 108 -69.10 99.17 1 A HIS 110 -150.03 87.20 2 A PRO 27 -68.23 89.48 2 A PRO 53 -67.12 92.40 2 A HIS 108 -67.22 87.75 3 A HIS 111 -138.57 -67.33 4 A LEU 105 -79.73 -166.93 4 A HIS 108 -64.93 89.20 5 A SER 36 -170.31 -174.39 5 A SER 104 -72.58 -87.36 5 A HIS 111 -166.05 -166.46 6 A PRO 27 -82.37 30.66 6 A THR 35 -133.92 -32.58 6 A ASN 59 -65.67 84.99 6 A THR 86 -140.13 -10.94 6 A HIS 107 -69.96 93.60 7 A SER 79 -68.45 89.79 7 A SER 104 52.68 -71.53 8 A SER 79 -65.73 94.81 8 A HIS 111 -154.41 42.07 9 A ASN 59 -62.07 89.10 9 A HIS 108 -68.63 96.28 10 A HIS 111 -153.46 68.34 11 A THR 35 -130.22 -49.48 11 A ASP 49 -91.47 -62.02 11 A ASN 59 -68.06 81.80 12 A GLU 106 -105.83 -93.95 12 A HIS 107 57.36 -84.75 12 A HIS 109 -84.84 43.33 12 A HIS 110 -152.48 86.82 14 A THR 86 -144.84 16.51 14 A SER 104 -158.76 -6.25 14 A HIS 110 -146.89 36.34 15 A SER 104 -61.57 95.02 16 A TYR 26 -115.79 79.73 17 A LEU 105 -62.84 98.16 17 A HIS 108 -65.98 90.95 17 A HIS 110 63.71 85.15 18 A SER 104 74.55 -39.30 19 A ASN 50 -149.04 -33.07 19 A SER 79 -67.85 91.68 19 A GLU 106 -55.64 87.07 19 A HIS 110 48.27 94.98 20 A ASP 11 -69.95 92.19 20 A HIS 109 -61.96 97.32 lowest energy, model 1 Solution NMR Structure DE NOVO DESIGNED PFK fold PROTEIN, Northeast Structural Genomics Consortium (NESG) Target OR250 1 N N A ASP 11 A ASP 11 HELX_P A TYR 26 A TYR 26 1 1 16 A SER 36 A SER 36 HELX_P A ASN 50 A ASN 50 1 2 15 A SER 62 A SER 62 HELX_P A LYS 75 A LYS 75 1 3 14 A ASP 87 A ASP 87 HELX_P A LEU 105 A LEU 105 1 4 19 DE NOVO PROTEIN Structural Genomics, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG), PSI-Biology, Protein Structure Initiative, DE NOVO PROTEIN 2LVB PDB 1 2LVB 1 112 2LVB 1 112 2LVB A 1 1 112 4 parallel parallel parallel A ARG 32 A ARG 32 A ALA 34 A ALA 34 A PRO 53 A PRO 53 A ASN 59 A ASN 59 A LYS 3 A LYS 3 A SER 9 A SER 9 A SER 79 A SER 79 A LYS 84 A LYS 84