1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Guilliere, F.
Sezonov, G.
Prangishvili, D.
Delepierre, M.
Guijarro, J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
US
Plos One
1932-6203
8
e52908
e52908
10.1371/journal.pone.0052908
23326363
Solution structure of an archaeal DNA binding protein with an eukaryotic zinc finger fold.
2013
10.2210/pdb2lvh/pdb
pdb_00002lvh
7010.232
Putative zinc finger protein ORF59a
1
man
polymer
65.409
ZINC ION
1
syn
non-polymer
no
no
MIEVSSMERVYQCLRCGLTFRTKKQLIRHLVNTEKVNPLSIDYYYQSFSVSLKDVNKII
MIEVSSMERVYQCLRCGLTFRTKKQLIRHLVNTEKVNPLSIDYYYQSFSVSLKDVNKII
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Yellowstone
sample
ORF59a
654909
Acidianus filamentous virus 1
511693
Escherichia coli
BL21
pET-30a
database_2
pdbx_database_status
pdbx_nmr_software
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Data collection
Database references
Derived calculations
Other
1
0
2013-01-30
1
1
2023-06-14
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_nmr_data
_pdbx_nmr_software.name
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
BMRB
Y
RCSB
2012-07-05
REL
REL
REL
REL
ZN
ZINC ION
959
380
220
157
202
19
40
37
structures with the lowest energy
150
10
0.0194
0.0037
2D 1H-15N HSQC
2D 1H-13C HSQC
2D 1H-13C HSQC aliphatic
3D CBCA(CO)NH
3D HNCACB
3D HNCO
3D C(CO)NH
3D H(CCO)NH
3D HNHA
3D 1H-15N NOESY
2D 1H-13C HSQC aliphatic
2D 1H-13C HSQC aromatic
2D (HB)CB(CGCD)HD aromatic
2D (HB)CB(CGCDCE)HE aromatic
3D 1H-13C NOESY aliphatic
3D 1H-13C NOESY aromatic
0.8-1
mM
[U-98% 13C; U-98% 15N]
200
7.4
ambient
298.15
K
simulated annealing, torsion angle dynamics
1
lowest energy
0.8-1 mM [U-98% 13C; U-98% 15N] AFV1p06, 88% H2O/12% D2O
88% H2O/12% D2O
Varian
collection
VnmrJ
2.3A
Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
processing
NMRPipe
Johnson, One Moon Scientific
data analysis
NMRView
5.3
Johnson, One Moon Scientific
peak picking
NMRView
5.3
Johnson, One Moon Scientific
chemical shift assignment
NMRView
5.3
Linge, O'Donoghue and Nilges
automated noe assignment
ARIA
2.2
Linge, O'Donoghue and Nilges
structure solution
ARIA
2.2
Brunger, Adams, Clore, Gros, Nilges and Read
structure solution
CNS
1.2
Brunger, Adams, Clore, Gros, Nilges and Read
refinement
CNS
1.2
Cornilescu, Delaglio and Bax
dihedral constraints
TALOS
Laskowski, MacArthur, Smith, Jones, Hutchinson, Morris, Moss and Tho
structure analysis
Procheck
3.5.4
Vriend
structure analysis
WhatCheck
Koradi, Billeter and Wuthrich
data analysis
MOLMOL
2K.2
600
Varian
NMR System
Varian NMR System
ZN
52
2
ZN
ZN
101
A
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
n
5
5
A
n
6
6
A
MET
7
n
7
MET
7
A
GLU
8
n
8
GLU
8
A
ARG
9
n
9
ARG
9
A
VAL
10
n
10
VAL
10
A
TYR
11
n
11
TYR
11
A
GLN
12
n
12
GLN
12
A
CYS
13
n
13
CYS
13
A
LEU
14
n
14
LEU
14
A
ARG
15
n
15
ARG
15
A
CYS
16
n
16
CYS
16
A
GLY
17
n
17
GLY
17
A
LEU
18
n
18
LEU
18
A
THR
19
n
19
THR
19
A
PHE
20
n
20
PHE
20
A
ARG
21
n
21
ARG
21
A
THR
22
n
22
THR
22
A
LYS
23
n
23
LYS
23
A
LYS
24
n
24
LYS
24
A
GLN
25
n
25
GLN
25
A
LEU
26
n
26
LEU
26
A
ILE
27
n
27
ILE
27
A
ARG
28
n
28
ARG
28
A
HIS
29
n
29
HIS
29
A
LEU
30
n
30
LEU
30
A
VAL
31
n
31
VAL
31
A
ASN
32
n
32
ASN
32
A
THR
33
n
33
THR
33
A
GLU
34
n
34
GLU
34
A
LYS
35
n
35
LYS
35
A
VAL
36
n
36
VAL
36
A
ASN
37
n
37
ASN
37
A
PRO
38
n
38
PRO
38
A
LEU
39
n
39
LEU
39
A
SER
40
n
40
SER
40
A
ILE
41
n
41
ILE
41
A
ASP
42
n
42
ASP
42
A
TYR
43
n
43
TYR
43
A
TYR
44
n
44
TYR
44
A
TYR
45
n
45
TYR
45
A
GLN
46
n
46
GLN
46
A
SER
47
n
47
SER
47
A
PHE
48
n
48
PHE
48
A
SER
49
n
49
SER
49
A
VAL
50
n
50
VAL
50
A
SER
51
n
51
SER
51
A
n
52
52
A
n
53
53
A
n
54
54
A
n
55
55
A
n
56
56
A
n
57
57
A
n
58
58
A
n
59
59
A
author_defined_assembly
1
monomeric
A
CYS
13
A
SG
CYS
13
1_555
A
ZN
101
B
ZN
ZN
1_555
A
CYS
16
A
SG
CYS
16
1_555
105.8
A
CYS
13
A
SG
CYS
13
1_555
A
ZN
101
B
ZN
ZN
1_555
A
HIS
29
A
NE2
HIS
29
1_555
106.7
A
CYS
16
A
SG
CYS
16
1_555
A
ZN
101
B
ZN
ZN
1_555
A
HIS
29
A
NE2
HIS
29
1_555
110.9
A
CYS
13
A
SG
CYS
13
1_555
A
ZN
101
B
ZN
ZN
1_555
A
GLU
34
A
OE2
GLU
34
1_555
86.0
A
CYS
16
A
SG
CYS
16
1_555
A
ZN
101
B
ZN
ZN
1_555
A
GLU
34
A
OE2
GLU
34
1_555
118.9
A
HIS
29
A
NE2
HIS
29
1_555
A
ZN
101
B
ZN
ZN
1_555
A
GLU
34
A
OE2
GLU
34
1_555
122.6
A
CYS
13
A
SG
CYS
13
1_555
A
ZN
101
B
ZN
ZN
1_555
A
GLU
34
A
OE1
GLU
34
1_555
143.4
A
CYS
16
A
SG
CYS
16
1_555
A
ZN
101
B
ZN
ZN
1_555
A
GLU
34
A
OE1
GLU
34
1_555
100.1
A
HIS
29
A
NE2
HIS
29
1_555
A
ZN
101
B
ZN
ZN
1_555
A
GLU
34
A
OE1
GLU
34
1_555
87.2
A
GLU
34
A
OE2
GLU
34
1_555
A
ZN
101
B
ZN
ZN
1_555
A
GLU
34
A
OE1
GLU
34
1_555
58.6
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
PHE
20
A
O
PHE
20
A
N
TYR
11
A
N
TYR
11
A
N
GLU
8
A
N
GLU
8
A
O
VAL
50
A
O
VAL
50
1
A
O
SER
51
A
O
SER
51
1
Y
2
A
O
SER
51
A
O
SER
51
1
Y
3
A
O
SER
51
A
O
SER
51
1
Y
4
A
O
SER
51
A
O
SER
51
1
Y
5
A
O
SER
51
A
O
SER
51
1
Y
6
A
O
SER
51
A
O
SER
51
1
Y
7
A
O
SER
51
A
O
SER
51
1
Y
8
A
O
SER
51
A
O
SER
51
1
Y
9
A
O
SER
51
A
O
SER
51
1
Y
10
A
O
SER
51
A
O
SER
51
1
Y
1
A
MET
1
A
MET
1
1
Y
1
A
ILE
2
A
ILE
2
1
Y
1
A
GLU
3
A
GLU
3
1
Y
1
A
VAL
4
A
VAL
4
1
Y
1
A
SER
5
A
SER
5
1
Y
1
A
SER
6
A
SER
6
1
Y
1
A
LEU
52
A
LEU
52
1
Y
1
A
LYS
53
A
LYS
53
1
Y
1
A
ASP
54
A
ASP
54
1
Y
1
A
VAL
55
A
VAL
55
1
Y
1
A
ASN
56
A
ASN
56
1
Y
1
A
LYS
57
A
LYS
57
1
Y
1
A
ILE
58
A
ILE
58
1
Y
1
A
ILE
59
A
ILE
59
1
Y
2
A
MET
1
A
MET
1
1
Y
2
A
ILE
2
A
ILE
2
1
Y
2
A
GLU
3
A
GLU
3
1
Y
2
A
VAL
4
A
VAL
4
1
Y
2
A
SER
5
A
SER
5
1
Y
2
A
SER
6
A
SER
6
1
Y
2
A
LEU
52
A
LEU
52
1
Y
2
A
LYS
53
A
LYS
53
1
Y
2
A
ASP
54
A
ASP
54
1
Y
2
A
VAL
55
A
VAL
55
1
Y
2
A
ASN
56
A
ASN
56
1
Y
2
A
LYS
57
A
LYS
57
1
Y
2
A
ILE
58
A
ILE
58
1
Y
2
A
ILE
59
A
ILE
59
1
Y
3
A
MET
1
A
MET
1
1
Y
3
A
ILE
2
A
ILE
2
1
Y
3
A
GLU
3
A
GLU
3
1
Y
3
A
VAL
4
A
VAL
4
1
Y
3
A
SER
5
A
SER
5
1
Y
3
A
SER
6
A
SER
6
1
Y
3
A
LEU
52
A
LEU
52
1
Y
3
A
LYS
53
A
LYS
53
1
Y
3
A
ASP
54
A
ASP
54
1
Y
3
A
VAL
55
A
VAL
55
1
Y
3
A
ASN
56
A
ASN
56
1
Y
3
A
LYS
57
A
LYS
57
1
Y
3
A
ILE
58
A
ILE
58
1
Y
3
A
ILE
59
A
ILE
59
1
Y
4
A
MET
1
A
MET
1
1
Y
4
A
ILE
2
A
ILE
2
1
Y
4
A
GLU
3
A
GLU
3
1
Y
4
A
VAL
4
A
VAL
4
1
Y
4
A
SER
5
A
SER
5
1
Y
4
A
SER
6
A
SER
6
1
Y
4
A
LEU
52
A
LEU
52
1
Y
4
A
LYS
53
A
LYS
53
1
Y
4
A
ASP
54
A
ASP
54
1
Y
4
A
VAL
55
A
VAL
55
1
Y
4
A
ASN
56
A
ASN
56
1
Y
4
A
LYS
57
A
LYS
57
1
Y
4
A
ILE
58
A
ILE
58
1
Y
4
A
ILE
59
A
ILE
59
1
Y
5
A
MET
1
A
MET
1
1
Y
5
A
ILE
2
A
ILE
2
1
Y
5
A
GLU
3
A
GLU
3
1
Y
5
A
VAL
4
A
VAL
4
1
Y
5
A
SER
5
A
SER
5
1
Y
5
A
SER
6
A
SER
6
1
Y
5
A
LEU
52
A
LEU
52
1
Y
5
A
LYS
53
A
LYS
53
1
Y
5
A
ASP
54
A
ASP
54
1
Y
5
A
VAL
55
A
VAL
55
1
Y
5
A
ASN
56
A
ASN
56
1
Y
5
A
LYS
57
A
LYS
57
1
Y
5
A
ILE
58
A
ILE
58
1
Y
5
A
ILE
59
A
ILE
59
1
Y
6
A
MET
1
A
MET
1
1
Y
6
A
ILE
2
A
ILE
2
1
Y
6
A
GLU
3
A
GLU
3
1
Y
6
A
VAL
4
A
VAL
4
1
Y
6
A
SER
5
A
SER
5
1
Y
6
A
SER
6
A
SER
6
1
Y
6
A
LEU
52
A
LEU
52
1
Y
6
A
LYS
53
A
LYS
53
1
Y
6
A
ASP
54
A
ASP
54
1
Y
6
A
VAL
55
A
VAL
55
1
Y
6
A
ASN
56
A
ASN
56
1
Y
6
A
LYS
57
A
LYS
57
1
Y
6
A
ILE
58
A
ILE
58
1
Y
6
A
ILE
59
A
ILE
59
1
Y
7
A
MET
1
A
MET
1
1
Y
7
A
ILE
2
A
ILE
2
1
Y
7
A
GLU
3
A
GLU
3
1
Y
7
A
VAL
4
A
VAL
4
1
Y
7
A
SER
5
A
SER
5
1
Y
7
A
SER
6
A
SER
6
1
Y
7
A
LEU
52
A
LEU
52
1
Y
7
A
LYS
53
A
LYS
53
1
Y
7
A
ASP
54
A
ASP
54
1
Y
7
A
VAL
55
A
VAL
55
1
Y
7
A
ASN
56
A
ASN
56
1
Y
7
A
LYS
57
A
LYS
57
1
Y
7
A
ILE
58
A
ILE
58
1
Y
7
A
ILE
59
A
ILE
59
1
Y
8
A
MET
1
A
MET
1
1
Y
8
A
ILE
2
A
ILE
2
1
Y
8
A
GLU
3
A
GLU
3
1
Y
8
A
VAL
4
A
VAL
4
1
Y
8
A
SER
5
A
SER
5
1
Y
8
A
SER
6
A
SER
6
1
Y
8
A
LEU
52
A
LEU
52
1
Y
8
A
LYS
53
A
LYS
53
1
Y
8
A
ASP
54
A
ASP
54
1
Y
8
A
VAL
55
A
VAL
55
1
Y
8
A
ASN
56
A
ASN
56
1
Y
8
A
LYS
57
A
LYS
57
1
Y
8
A
ILE
58
A
ILE
58
1
Y
8
A
ILE
59
A
ILE
59
1
Y
9
A
MET
1
A
MET
1
1
Y
9
A
ILE
2
A
ILE
2
1
Y
9
A
GLU
3
A
GLU
3
1
Y
9
A
VAL
4
A
VAL
4
1
Y
9
A
SER
5
A
SER
5
1
Y
9
A
SER
6
A
SER
6
1
Y
9
A
LEU
52
A
LEU
52
1
Y
9
A
LYS
53
A
LYS
53
1
Y
9
A
ASP
54
A
ASP
54
1
Y
9
A
VAL
55
A
VAL
55
1
Y
9
A
ASN
56
A
ASN
56
1
Y
9
A
LYS
57
A
LYS
57
1
Y
9
A
ILE
58
A
ILE
58
1
Y
9
A
ILE
59
A
ILE
59
1
Y
10
A
MET
1
A
MET
1
1
Y
10
A
ILE
2
A
ILE
2
1
Y
10
A
GLU
3
A
GLU
3
1
Y
10
A
VAL
4
A
VAL
4
1
Y
10
A
SER
5
A
SER
5
1
Y
10
A
SER
6
A
SER
6
1
Y
10
A
LEU
52
A
LEU
52
1
Y
10
A
LYS
53
A
LYS
53
1
Y
10
A
ASP
54
A
ASP
54
1
Y
10
A
VAL
55
A
VAL
55
1
Y
10
A
ASN
56
A
ASN
56
1
Y
10
A
LYS
57
A
LYS
57
1
Y
10
A
ILE
58
A
ILE
58
1
Y
10
A
ILE
59
A
ILE
59
1
Y
4
A
A
HA
HB2
TYR
SER
11
47
1.21
4
A
SER
47
-174.87
-174.03
7
A
ARG
15
-100.91
-60.87
8
A
ARG
15
-99.81
-60.85
lowest energy, model 1
Solution structure of the zinc finger AFV1p06 protein from the hyperthermophilic archaeal virus AFV1
1
N
N
2
N
N
A
THR
22
A
THR
22
HELX_P
A
THR
33
A
THR
33
1
1
12
A
SER
40
A
SER
40
HELX_P
A
TYR
43
A
TYR
43
5
2
4
metalc
2.311
A
CYS
13
A
SG
CYS
13
1_555
A
ZN
101
B
ZN
ZN
1_555
metalc
2.305
A
CYS
16
A
SG
CYS
16
1_555
A
ZN
101
B
ZN
ZN
1_555
metalc
1.998
A
HIS
29
A
NE2
HIS
29
1_555
A
ZN
101
B
ZN
ZN
1_555
metalc
1.931
A
GLU
34
A
OE2
GLU
34
1_555
A
ZN
101
B
ZN
ZN
1_555
metalc
2.385
A
GLU
34
A
OE1
GLU
34
1_555
A
ZN
101
B
ZN
ZN
1_555
METAL BINDING PROTEIN
Zinc finger, METAL BINDING PROTEIN
Y059A_AFV1Y
UNP
1
1
Q70LE5
MIEVSSMERVYQCLRCGLTFRTKKQLIRHLVNTEKVNPLSIDYYYQSFSVSLKDVNKII
1
59
2LVH
1
59
Q70LE5
A
1
1
59
3
anti-parallel
anti-parallel
A
THR
19
A
THR
19
A
PHE
20
A
PHE
20
A
GLU
8
A
GLU
8
A
CYS
13
A
CYS
13
A
TYR
45
A
TYR
45
A
VAL
50
A
VAL
50
BINDING SITE FOR RESIDUE ZN A 101
A
ZN
101
Software
4
A
CYS
13
A
CYS
13
4
1_555
A
CYS
16
A
CYS
16
4
1_555
A
HIS
29
A
HIS
29
4
1_555
A
GLU
34
A
GLU
34
4
1_555