1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Guilliere, F. Sezonov, G. Prangishvili, D. Delepierre, M. Guijarro, J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer US Plos One 1932-6203 8 e52908 e52908 10.1371/journal.pone.0052908 23326363 Solution structure of an archaeal DNA binding protein with an eukaryotic zinc finger fold. 2013 10.2210/pdb2lvh/pdb pdb_00002lvh 7010.232 Putative zinc finger protein ORF59a 1 man polymer 65.409 ZINC ION 1 syn non-polymer no no MIEVSSMERVYQCLRCGLTFRTKKQLIRHLVNTEKVNPLSIDYYYQSFSVSLKDVNKII MIEVSSMERVYQCLRCGLTFRTKKQLIRHLVNTEKVNPLSIDYYYQSFSVSLKDVNKII A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Yellowstone sample ORF59a 654909 Acidianus filamentous virus 1 511693 Escherichia coli BL21 pET-30a database_2 pdbx_database_status pdbx_nmr_software pdbx_struct_conn_angle struct_conn struct_site repository Initial release Data collection Database references Derived calculations Other 1 0 2013-01-30 1 1 2023-06-14 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.status_code_nmr_data _pdbx_nmr_software.name _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id BMRB Y RCSB 2012-07-05 REL REL REL REL ZN ZINC ION 959 380 220 157 202 19 40 37 structures with the lowest energy 150 10 0.0194 0.0037 2D 1H-15N HSQC 2D 1H-13C HSQC 2D 1H-13C HSQC aliphatic 3D CBCA(CO)NH 3D HNCACB 3D HNCO 3D C(CO)NH 3D H(CCO)NH 3D HNHA 3D 1H-15N NOESY 2D 1H-13C HSQC aliphatic 2D 1H-13C HSQC aromatic 2D (HB)CB(CGCD)HD aromatic 2D (HB)CB(CGCDCE)HE aromatic 3D 1H-13C NOESY aliphatic 3D 1H-13C NOESY aromatic 0.8-1 mM [U-98% 13C; U-98% 15N] 200 7.4 ambient 298.15 K simulated annealing, torsion angle dynamics 1 lowest energy 0.8-1 mM [U-98% 13C; U-98% 15N] AFV1p06, 88% H2O/12% D2O 88% H2O/12% D2O Varian collection VnmrJ 2.3A Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax processing NMRPipe Johnson, One Moon Scientific data analysis NMRView 5.3 Johnson, One Moon Scientific peak picking NMRView 5.3 Johnson, One Moon Scientific chemical shift assignment NMRView 5.3 Linge, O'Donoghue and Nilges automated noe assignment ARIA 2.2 Linge, O'Donoghue and Nilges structure solution ARIA 2.2 Brunger, Adams, Clore, Gros, Nilges and Read structure solution CNS 1.2 Brunger, Adams, Clore, Gros, Nilges and Read refinement CNS 1.2 Cornilescu, Delaglio and Bax dihedral constraints TALOS Laskowski, MacArthur, Smith, Jones, Hutchinson, Morris, Moss and Tho structure analysis Procheck 3.5.4 Vriend structure analysis WhatCheck Koradi, Billeter and Wuthrich data analysis MOLMOL 2K.2 600 Varian NMR System Varian NMR System ZN 52 2 ZN ZN 101 A n 1 1 A n 2 2 A n 3 3 A n 4 4 A n 5 5 A n 6 6 A MET 7 n 7 MET 7 A GLU 8 n 8 GLU 8 A ARG 9 n 9 ARG 9 A VAL 10 n 10 VAL 10 A TYR 11 n 11 TYR 11 A GLN 12 n 12 GLN 12 A CYS 13 n 13 CYS 13 A LEU 14 n 14 LEU 14 A ARG 15 n 15 ARG 15 A CYS 16 n 16 CYS 16 A GLY 17 n 17 GLY 17 A LEU 18 n 18 LEU 18 A THR 19 n 19 THR 19 A PHE 20 n 20 PHE 20 A ARG 21 n 21 ARG 21 A THR 22 n 22 THR 22 A LYS 23 n 23 LYS 23 A LYS 24 n 24 LYS 24 A GLN 25 n 25 GLN 25 A LEU 26 n 26 LEU 26 A ILE 27 n 27 ILE 27 A ARG 28 n 28 ARG 28 A HIS 29 n 29 HIS 29 A LEU 30 n 30 LEU 30 A VAL 31 n 31 VAL 31 A ASN 32 n 32 ASN 32 A THR 33 n 33 THR 33 A GLU 34 n 34 GLU 34 A LYS 35 n 35 LYS 35 A VAL 36 n 36 VAL 36 A ASN 37 n 37 ASN 37 A PRO 38 n 38 PRO 38 A LEU 39 n 39 LEU 39 A SER 40 n 40 SER 40 A ILE 41 n 41 ILE 41 A ASP 42 n 42 ASP 42 A TYR 43 n 43 TYR 43 A TYR 44 n 44 TYR 44 A TYR 45 n 45 TYR 45 A GLN 46 n 46 GLN 46 A SER 47 n 47 SER 47 A PHE 48 n 48 PHE 48 A SER 49 n 49 SER 49 A VAL 50 n 50 VAL 50 A SER 51 n 51 SER 51 A n 52 52 A n 53 53 A n 54 54 A n 55 55 A n 56 56 A n 57 57 A n 58 58 A n 59 59 A author_defined_assembly 1 monomeric A CYS 13 A SG CYS 13 1_555 A ZN 101 B ZN ZN 1_555 A CYS 16 A SG CYS 16 1_555 105.8 A CYS 13 A SG CYS 13 1_555 A ZN 101 B ZN ZN 1_555 A HIS 29 A NE2 HIS 29 1_555 106.7 A CYS 16 A SG CYS 16 1_555 A ZN 101 B ZN ZN 1_555 A HIS 29 A NE2 HIS 29 1_555 110.9 A CYS 13 A SG CYS 13 1_555 A ZN 101 B ZN ZN 1_555 A GLU 34 A OE2 GLU 34 1_555 86.0 A CYS 16 A SG CYS 16 1_555 A ZN 101 B ZN ZN 1_555 A GLU 34 A OE2 GLU 34 1_555 118.9 A HIS 29 A NE2 HIS 29 1_555 A ZN 101 B ZN ZN 1_555 A GLU 34 A OE2 GLU 34 1_555 122.6 A CYS 13 A SG CYS 13 1_555 A ZN 101 B ZN ZN 1_555 A GLU 34 A OE1 GLU 34 1_555 143.4 A CYS 16 A SG CYS 16 1_555 A ZN 101 B ZN ZN 1_555 A GLU 34 A OE1 GLU 34 1_555 100.1 A HIS 29 A NE2 HIS 29 1_555 A ZN 101 B ZN ZN 1_555 A GLU 34 A OE1 GLU 34 1_555 87.2 A GLU 34 A OE2 GLU 34 1_555 A ZN 101 B ZN ZN 1_555 A GLU 34 A OE1 GLU 34 1_555 58.6 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O PHE 20 A O PHE 20 A N TYR 11 A N TYR 11 A N GLU 8 A N GLU 8 A O VAL 50 A O VAL 50 1 A O SER 51 A O SER 51 1 Y 2 A O SER 51 A O SER 51 1 Y 3 A O SER 51 A O SER 51 1 Y 4 A O SER 51 A O SER 51 1 Y 5 A O SER 51 A O SER 51 1 Y 6 A O SER 51 A O SER 51 1 Y 7 A O SER 51 A O SER 51 1 Y 8 A O SER 51 A O SER 51 1 Y 9 A O SER 51 A O SER 51 1 Y 10 A O SER 51 A O SER 51 1 Y 1 A MET 1 A MET 1 1 Y 1 A ILE 2 A ILE 2 1 Y 1 A GLU 3 A GLU 3 1 Y 1 A VAL 4 A VAL 4 1 Y 1 A SER 5 A SER 5 1 Y 1 A SER 6 A SER 6 1 Y 1 A LEU 52 A LEU 52 1 Y 1 A LYS 53 A LYS 53 1 Y 1 A ASP 54 A ASP 54 1 Y 1 A VAL 55 A VAL 55 1 Y 1 A ASN 56 A ASN 56 1 Y 1 A LYS 57 A LYS 57 1 Y 1 A ILE 58 A ILE 58 1 Y 1 A ILE 59 A ILE 59 1 Y 2 A MET 1 A MET 1 1 Y 2 A ILE 2 A ILE 2 1 Y 2 A GLU 3 A GLU 3 1 Y 2 A VAL 4 A VAL 4 1 Y 2 A SER 5 A SER 5 1 Y 2 A SER 6 A SER 6 1 Y 2 A LEU 52 A LEU 52 1 Y 2 A LYS 53 A LYS 53 1 Y 2 A ASP 54 A ASP 54 1 Y 2 A VAL 55 A VAL 55 1 Y 2 A ASN 56 A ASN 56 1 Y 2 A LYS 57 A LYS 57 1 Y 2 A ILE 58 A ILE 58 1 Y 2 A ILE 59 A ILE 59 1 Y 3 A MET 1 A MET 1 1 Y 3 A ILE 2 A ILE 2 1 Y 3 A GLU 3 A GLU 3 1 Y 3 A VAL 4 A VAL 4 1 Y 3 A SER 5 A SER 5 1 Y 3 A SER 6 A SER 6 1 Y 3 A LEU 52 A LEU 52 1 Y 3 A LYS 53 A LYS 53 1 Y 3 A ASP 54 A ASP 54 1 Y 3 A VAL 55 A VAL 55 1 Y 3 A ASN 56 A ASN 56 1 Y 3 A LYS 57 A LYS 57 1 Y 3 A ILE 58 A ILE 58 1 Y 3 A ILE 59 A ILE 59 1 Y 4 A MET 1 A MET 1 1 Y 4 A ILE 2 A ILE 2 1 Y 4 A GLU 3 A GLU 3 1 Y 4 A VAL 4 A VAL 4 1 Y 4 A SER 5 A SER 5 1 Y 4 A SER 6 A SER 6 1 Y 4 A LEU 52 A LEU 52 1 Y 4 A LYS 53 A LYS 53 1 Y 4 A ASP 54 A ASP 54 1 Y 4 A VAL 55 A VAL 55 1 Y 4 A ASN 56 A ASN 56 1 Y 4 A LYS 57 A LYS 57 1 Y 4 A ILE 58 A ILE 58 1 Y 4 A ILE 59 A ILE 59 1 Y 5 A MET 1 A MET 1 1 Y 5 A ILE 2 A ILE 2 1 Y 5 A GLU 3 A GLU 3 1 Y 5 A VAL 4 A VAL 4 1 Y 5 A SER 5 A SER 5 1 Y 5 A SER 6 A SER 6 1 Y 5 A LEU 52 A LEU 52 1 Y 5 A LYS 53 A LYS 53 1 Y 5 A ASP 54 A ASP 54 1 Y 5 A VAL 55 A VAL 55 1 Y 5 A ASN 56 A ASN 56 1 Y 5 A LYS 57 A LYS 57 1 Y 5 A ILE 58 A ILE 58 1 Y 5 A ILE 59 A ILE 59 1 Y 6 A MET 1 A MET 1 1 Y 6 A ILE 2 A ILE 2 1 Y 6 A GLU 3 A GLU 3 1 Y 6 A VAL 4 A VAL 4 1 Y 6 A SER 5 A SER 5 1 Y 6 A SER 6 A SER 6 1 Y 6 A LEU 52 A LEU 52 1 Y 6 A LYS 53 A LYS 53 1 Y 6 A ASP 54 A ASP 54 1 Y 6 A VAL 55 A VAL 55 1 Y 6 A ASN 56 A ASN 56 1 Y 6 A LYS 57 A LYS 57 1 Y 6 A ILE 58 A ILE 58 1 Y 6 A ILE 59 A ILE 59 1 Y 7 A MET 1 A MET 1 1 Y 7 A ILE 2 A ILE 2 1 Y 7 A GLU 3 A GLU 3 1 Y 7 A VAL 4 A VAL 4 1 Y 7 A SER 5 A SER 5 1 Y 7 A SER 6 A SER 6 1 Y 7 A LEU 52 A LEU 52 1 Y 7 A LYS 53 A LYS 53 1 Y 7 A ASP 54 A ASP 54 1 Y 7 A VAL 55 A VAL 55 1 Y 7 A ASN 56 A ASN 56 1 Y 7 A LYS 57 A LYS 57 1 Y 7 A ILE 58 A ILE 58 1 Y 7 A ILE 59 A ILE 59 1 Y 8 A MET 1 A MET 1 1 Y 8 A ILE 2 A ILE 2 1 Y 8 A GLU 3 A GLU 3 1 Y 8 A VAL 4 A VAL 4 1 Y 8 A SER 5 A SER 5 1 Y 8 A SER 6 A SER 6 1 Y 8 A LEU 52 A LEU 52 1 Y 8 A LYS 53 A LYS 53 1 Y 8 A ASP 54 A ASP 54 1 Y 8 A VAL 55 A VAL 55 1 Y 8 A ASN 56 A ASN 56 1 Y 8 A LYS 57 A LYS 57 1 Y 8 A ILE 58 A ILE 58 1 Y 8 A ILE 59 A ILE 59 1 Y 9 A MET 1 A MET 1 1 Y 9 A ILE 2 A ILE 2 1 Y 9 A GLU 3 A GLU 3 1 Y 9 A VAL 4 A VAL 4 1 Y 9 A SER 5 A SER 5 1 Y 9 A SER 6 A SER 6 1 Y 9 A LEU 52 A LEU 52 1 Y 9 A LYS 53 A LYS 53 1 Y 9 A ASP 54 A ASP 54 1 Y 9 A VAL 55 A VAL 55 1 Y 9 A ASN 56 A ASN 56 1 Y 9 A LYS 57 A LYS 57 1 Y 9 A ILE 58 A ILE 58 1 Y 9 A ILE 59 A ILE 59 1 Y 10 A MET 1 A MET 1 1 Y 10 A ILE 2 A ILE 2 1 Y 10 A GLU 3 A GLU 3 1 Y 10 A VAL 4 A VAL 4 1 Y 10 A SER 5 A SER 5 1 Y 10 A SER 6 A SER 6 1 Y 10 A LEU 52 A LEU 52 1 Y 10 A LYS 53 A LYS 53 1 Y 10 A ASP 54 A ASP 54 1 Y 10 A VAL 55 A VAL 55 1 Y 10 A ASN 56 A ASN 56 1 Y 10 A LYS 57 A LYS 57 1 Y 10 A ILE 58 A ILE 58 1 Y 10 A ILE 59 A ILE 59 1 Y 4 A A HA HB2 TYR SER 11 47 1.21 4 A SER 47 -174.87 -174.03 7 A ARG 15 -100.91 -60.87 8 A ARG 15 -99.81 -60.85 lowest energy, model 1 Solution structure of the zinc finger AFV1p06 protein from the hyperthermophilic archaeal virus AFV1 1 N N 2 N N A THR 22 A THR 22 HELX_P A THR 33 A THR 33 1 1 12 A SER 40 A SER 40 HELX_P A TYR 43 A TYR 43 5 2 4 metalc 2.311 A CYS 13 A SG CYS 13 1_555 A ZN 101 B ZN ZN 1_555 metalc 2.305 A CYS 16 A SG CYS 16 1_555 A ZN 101 B ZN ZN 1_555 metalc 1.998 A HIS 29 A NE2 HIS 29 1_555 A ZN 101 B ZN ZN 1_555 metalc 1.931 A GLU 34 A OE2 GLU 34 1_555 A ZN 101 B ZN ZN 1_555 metalc 2.385 A GLU 34 A OE1 GLU 34 1_555 A ZN 101 B ZN ZN 1_555 METAL BINDING PROTEIN Zinc finger, METAL BINDING PROTEIN Y059A_AFV1Y UNP 1 1 Q70LE5 MIEVSSMERVYQCLRCGLTFRTKKQLIRHLVNTEKVNPLSIDYYYQSFSVSLKDVNKII 1 59 2LVH 1 59 Q70LE5 A 1 1 59 3 anti-parallel anti-parallel A THR 19 A THR 19 A PHE 20 A PHE 20 A GLU 8 A GLU 8 A CYS 13 A CYS 13 A TYR 45 A TYR 45 A VAL 50 A VAL 50 BINDING SITE FOR RESIDUE ZN A 101 A ZN 101 Software 4 A CYS 13 A CYS 13 4 1_555 A CYS 16 A CYS 16 4 1_555 A HIS 29 A HIS 29 4 1_555 A GLU 34 A GLU 34 4 1_555