1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Liu, S.
Chen, Y.
Huang, T.
Tarasov, S.G.
King, A.
Li, J.
Weissman, A.M.
Byrd, R.A.
Das, R.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
Structure
STRUE6
2005
0969-2126
20
2138
2150
10.1016/j.str.2012.09.020
23123110
Promiscuous Interactions of gp78 E3 Ligase CUE Domain with Polyubiquitin Chains.
2012
10.2210/pdb2lvo/pdb
pdb_00002lvo
8576.831
Ubiquitin
1
man
polymer
5966.752
E3 ubiquitin-protein ligase AMFR
6.3.2.-
CUE domain residues 453-504
1
man
polymer
Autocrine motility factor receptor, isoform 2, AMF receptor, isoform 2, RING finger protein 45, gp78
no
no
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
A
polypeptide(L)
no
no
SNSQLNAMAHQIQEMFPQVPYHLVLQDLQLTRSVEITTDNILEGRIQVPFPT
SNSQLNAMAHQIQEMFPQVPYHLVLQDLQLTRSVEITTDNILEGRIQVPFPT
C
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
UBC
9606
Homo sapiens
562
Escherichia coli
pET3a
human
sample
AMFR, RNF45
9606
Homo sapiens
562
Escherichia coli
pET3a
database_2
pdbx_database_status
pdbx_nmr_software
repository
Initial release
Database references
Data collection
Database references
Other
1
0
2012-11-21
1
1
2012-12-26
1
2
2023-06-14
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_nmr_data
_pdbx_nmr_software.name
BMRB
Y
RCSB
2012-07-09
REL
REL
REL
REL
42
0
0
0
0
0
0
structures with the lowest energy
200
20
1.8
8
0
2D 1H-15N HSQC
2D 1H-13C HSQC
3D HNCO
3D CBCA(CO)NH
3D C(CO)NH
3D H(CCO)NH
3D HNCACB
2D 1H-13C HSQC aromatic
3D 1H-15N NOESY
50
mM
50
mM
7.2
ambient
298
K
FINAL STEP IN WATER
simulated annealing
1
lowest energy
50 mM TRIS, 50 mM sodium chloride, 90% H2O/10% D2O
90% H2O/10% D2O
Goddard
chemical shift assignment
Sparky
Goddard
peak picking
Sparky
Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
processing
NMRPipe
Alexandre Bonvin
structure solution
CNS
Schwieters, Kuszewski, Tjandra and Clore
refinement
X-PLOR NIH
600
Bruker
INOVA
Bruker INOVA
700
Bruker
INOVA
Bruker INOVA
600
Varian
INOVA
Varian INOVA
800
Varian
INOVA
Varian INOVA
MET
1
n
1
MET
1
A
GLN
2
n
2
GLN
2
A
ILE
3
n
3
ILE
3
A
PHE
4
n
4
PHE
4
A
VAL
5
n
5
VAL
5
A
LYS
6
n
6
LYS
6
A
THR
7
n
7
THR
7
A
LEU
8
n
8
LEU
8
A
THR
9
n
9
THR
9
A
GLY
10
n
10
GLY
10
A
LYS
11
n
11
LYS
11
A
THR
12
n
12
THR
12
A
ILE
13
n
13
ILE
13
A
THR
14
n
14
THR
14
A
LEU
15
n
15
LEU
15
A
GLU
16
n
16
GLU
16
A
VAL
17
n
17
VAL
17
A
GLU
18
n
18
GLU
18
A
PRO
19
n
19
PRO
19
A
SER
20
n
20
SER
20
A
ASP
21
n
21
ASP
21
A
THR
22
n
22
THR
22
A
ILE
23
n
23
ILE
23
A
GLU
24
n
24
GLU
24
A
ASN
25
n
25
ASN
25
A
VAL
26
n
26
VAL
26
A
LYS
27
n
27
LYS
27
A
ALA
28
n
28
ALA
28
A
LYS
29
n
29
LYS
29
A
ILE
30
n
30
ILE
30
A
GLN
31
n
31
GLN
31
A
ASP
32
n
32
ASP
32
A
LYS
33
n
33
LYS
33
A
GLU
34
n
34
GLU
34
A
GLY
35
n
35
GLY
35
A
ILE
36
n
36
ILE
36
A
PRO
37
n
37
PRO
37
A
PRO
38
n
38
PRO
38
A
ASP
39
n
39
ASP
39
A
GLN
40
n
40
GLN
40
A
GLN
41
n
41
GLN
41
A
ARG
42
n
42
ARG
42
A
LEU
43
n
43
LEU
43
A
ILE
44
n
44
ILE
44
A
PHE
45
n
45
PHE
45
A
ALA
46
n
46
ALA
46
A
GLY
47
n
47
GLY
47
A
LYS
48
n
48
LYS
48
A
GLN
49
n
49
GLN
49
A
LEU
50
n
50
LEU
50
A
GLU
51
n
51
GLU
51
A
ASP
52
n
52
ASP
52
A
GLY
53
n
53
GLY
53
A
ARG
54
n
54
ARG
54
A
THR
55
n
55
THR
55
A
LEU
56
n
56
LEU
56
A
SER
57
n
57
SER
57
A
ASP
58
n
58
ASP
58
A
TYR
59
n
59
TYR
59
A
ASN
60
n
60
ASN
60
A
ILE
61
n
61
ILE
61
A
GLN
62
n
62
GLN
62
A
LYS
63
n
63
LYS
63
A
GLU
64
n
64
GLU
64
A
SER
65
n
65
SER
65
A
THR
66
n
66
THR
66
A
LEU
67
n
67
LEU
67
A
HIS
68
n
68
HIS
68
A
LEU
69
n
69
LEU
69
A
VAL
70
n
70
VAL
70
A
LEU
71
n
71
LEU
71
A
ARG
72
n
72
ARG
72
A
LEU
73
n
73
LEU
73
A
ARG
74
n
74
ARG
74
A
GLY
75
n
75
GLY
75
A
GLY
76
n
76
GLY
76
A
SER
453
n
1
SER
453
C
ASN
454
n
2
ASN
454
C
SER
455
n
3
SER
455
C
GLN
456
n
4
GLN
456
C
LEU
457
n
5
LEU
457
C
ASN
458
n
6
ASN
458
C
ALA
459
n
7
ALA
459
C
MET
460
n
8
MET
460
C
ALA
461
n
9
ALA
461
C
HIS
462
n
10
HIS
462
C
GLN
463
n
11
GLN
463
C
ILE
464
n
12
ILE
464
C
GLN
465
n
13
GLN
465
C
GLU
466
n
14
GLU
466
C
MET
467
n
15
MET
467
C
PHE
468
n
16
PHE
468
C
PRO
469
n
17
PRO
469
C
GLN
470
n
18
GLN
470
C
VAL
471
n
19
VAL
471
C
PRO
472
n
20
PRO
472
C
TYR
473
n
21
TYR
473
C
HIS
474
n
22
HIS
474
C
LEU
475
n
23
LEU
475
C
VAL
476
n
24
VAL
476
C
LEU
477
n
25
LEU
477
C
GLN
478
n
26
GLN
478
C
ASP
479
n
27
ASP
479
C
LEU
480
n
28
LEU
480
C
GLN
481
n
29
GLN
481
C
LEU
482
n
30
LEU
482
C
THR
483
n
31
THR
483
C
ARG
484
n
32
ARG
484
C
SER
485
n
33
SER
485
C
VAL
486
n
34
VAL
486
C
GLU
487
n
35
GLU
487
C
ILE
488
n
36
ILE
488
C
THR
489
n
37
THR
489
C
THR
490
n
38
THR
490
C
ASP
491
n
39
ASP
491
C
ASN
492
n
40
ASN
492
C
ILE
493
n
41
ILE
493
C
LEU
494
n
42
LEU
494
C
GLU
495
n
43
GLU
495
C
GLY
496
n
44
GLY
496
C
ARG
497
n
45
ARG
497
C
ILE
498
n
46
ILE
498
C
GLN
499
n
47
GLN
499
C
VAL
500
n
48
VAL
500
C
PRO
501
n
49
PRO
501
C
PHE
502
n
50
PHE
502
C
PRO
503
n
51
PRO
503
C
THR
504
n
52
THR
504
C
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
ILE
13
A
O
ILE
13
A
N
VAL
5
A
N
VAL
5
A
N
LYS
6
A
N
LYS
6
A
O
LEU
67
A
O
LEU
67
A
O
HIS
68
A
O
HIS
68
A
N
ILE
44
A
N
ILE
44
A
N
PHE
45
A
N
PHE
45
A
O
LYS
48
A
O
LYS
48
1
A
A
HZ1
OE2
LYS
GLU
63
64
1.59
3
A
A
OD2
HZ3
ASP
LYS
21
29
1.58
6
A
A
HZ1
OD1
LYS
ASP
27
52
1.60
7
A
A
OD2
HZ1
ASP
LYS
21
29
1.59
8
A
A
H1
OE2
MET
GLU
1
16
1.59
9
A
C
HH21
OD2
ARG
ASP
74
491
1.58
9
A
A
OD2
HZ1
ASP
LYS
21
29
1.58
11
A
C
HH11
OD1
ARG
ASP
42
491
1.59
12
A
A
OD2
HZ1
ASP
LYS
21
29
1.57
12
A
A
HZ1
OD1
LYS
ASP
27
52
1.60
13
A
A
HZ2
OD1
LYS
ASP
27
52
1.59
17
A
A
OD2
HZ2
ASP
LYS
21
29
1.56
20
A
A
OD2
HZ1
ASP
LYS
21
29
1.59
1
C
PRO
469
-78.91
36.03
1
C
GLN
470
-140.31
-3.51
1
C
LEU
482
-90.27
-74.87
1
C
GLN
499
-67.69
99.79
1
C
PRO
501
-52.44
105.94
2
A
ARG
74
-138.50
-56.90
2
C
PRO
469
-79.46
29.07
2
C
LEU
482
-98.66
-61.83
4
A
GLN
62
-103.35
-168.61
5
C
ASN
454
58.42
19.53
5
C
SER
485
-162.60
114.03
5
C
PRO
501
-59.01
109.11
6
A
GLN
62
-106.88
-166.35
6
C
PRO
469
-85.30
33.05
6
C
PRO
501
-68.98
75.33
6
C
PRO
503
-59.64
107.62
7
A
GLN
62
-102.60
-169.90
7
C
PRO
469
-79.64
37.28
7
C
GLN
470
-148.50
14.98
7
C
PRO
503
-60.96
96.53
8
A
GLN
62
-101.33
-165.76
8
C
PRO
501
-65.20
90.80
8
C
PRO
503
-65.58
96.28
9
A
GLN
62
-107.02
-164.28
9
C
PRO
501
-54.98
99.85
10
A
ALA
46
70.25
-8.22
10
A
GLN
62
-122.34
-166.35
11
A
GLN
62
-105.17
-167.07
11
C
PRO
503
-60.44
97.45
12
C
LEU
482
-96.34
-62.01
13
A
LYS
33
-92.50
-64.81
13
A
GLN
62
-117.86
-157.36
13
C
PRO
469
-90.40
30.87
13
C
PRO
501
-65.88
81.76
14
A
LYS
33
-91.15
-63.46
14
A
GLN
62
-102.23
-163.62
14
C
PRO
469
-79.21
32.08
14
C
GLN
470
-145.59
30.73
15
A
ALA
46
71.91
-51.79
15
C
PRO
501
-65.39
79.38
16
C
PRO
501
-66.12
85.33
17
C
PRO
501
-56.70
102.74
17
C
PRO
503
-66.34
93.85
18
A
GLN
62
-109.24
-160.78
18
A
ARG
74
-90.95
37.59
18
C
PRO
501
-59.42
109.12
19
A
LYS
33
-100.82
-60.32
19
C
PRO
501
-53.93
102.52
19
C
PRO
503
-69.26
73.66
20
C
PRO
469
-81.05
36.83
20
C
GLN
470
-142.66
14.58
lowest energy, model
Structure of the gp78CUE domain bound to monubiquitin
1
N
N
2
N
N
A
THR
22
A
THR
22
HELX_P
A
GLY
35
A
GLY
35
1
1
14
A
PRO
37
A
PRO
37
HELX_P
A
ASP
39
A
ASP
39
5
2
3
C
ASN
454
B
ASN
2
HELX_P
C
GLU
466
B
GLU
14
1
3
13
C
PRO
472
B
PRO
20
HELX_P
C
GLN
481
B
GLN
29
1
4
10
C
SER
485
B
SER
33
HELX_P
C
GLY
496
B
GLY
44
1
5
12
SIGNALING PROTEIN/LIGASE
CUE domain, SIGNALING PROTEIN-LIGASE complex
UBC_HUMAN
UNP
1
1
P0CG48
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
AMFR2_HUMAN
UNP
2
453
Q9UKV5
SNSQLNAMAHQIQEMFPQVPYHLVLQDLQLTRSVEITTDNILEGRIQVPFPT
1
76
2LVO
1
76
P0CG48
A
1
1
76
453
504
2LVO
453
504
Q9UKV5
C
2
1
52
5
anti-parallel
parallel
anti-parallel
anti-parallel
A
ILE
13
A
ILE
13
A
GLU
16
A
GLU
16
A
GLN
2
A
GLN
2
A
THR
7
A
THR
7
A
THR
66
A
THR
66
A
LEU
71
A
LEU
71
A
GLN
41
A
GLN
41
A
PHE
45
A
PHE
45
A
LYS
48
A
LYS
48
A
GLN
49
A
GLN
49