1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Liu, S. Chen, Y. Huang, T. Tarasov, S.G. King, A. Li, J. Weissman, A.M. Byrd, R.A. Das, R. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK Structure STRUE6 2005 0969-2126 20 2138 2150 10.1016/j.str.2012.09.020 23123110 Promiscuous Interactions of gp78 E3 Ligase CUE Domain with Polyubiquitin Chains. 2012 10.2210/pdb2lvo/pdb pdb_00002lvo 8576.831 Ubiquitin 1 man polymer 5966.752 E3 ubiquitin-protein ligase AMFR 6.3.2.- CUE domain residues 453-504 1 man polymer Autocrine motility factor receptor, isoform 2, AMF receptor, isoform 2, RING finger protein 45, gp78 no no MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG A polypeptide(L) no no SNSQLNAMAHQIQEMFPQVPYHLVLQDLQLTRSVEITTDNILEGRIQVPFPT SNSQLNAMAHQIQEMFPQVPYHLVLQDLQLTRSVEITTDNILEGRIQVPFPT C polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample UBC 9606 Homo sapiens 562 Escherichia coli pET3a human sample AMFR, RNF45 9606 Homo sapiens 562 Escherichia coli pET3a database_2 pdbx_database_status pdbx_nmr_software repository Initial release Database references Data collection Database references Other 1 0 2012-11-21 1 1 2012-12-26 1 2 2023-06-14 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.status_code_nmr_data _pdbx_nmr_software.name BMRB Y RCSB 2012-07-09 REL REL REL REL 42 0 0 0 0 0 0 structures with the lowest energy 200 20 1.8 8 0 2D 1H-15N HSQC 2D 1H-13C HSQC 3D HNCO 3D CBCA(CO)NH 3D C(CO)NH 3D H(CCO)NH 3D HNCACB 2D 1H-13C HSQC aromatic 3D 1H-15N NOESY 50 mM 50 mM 7.2 ambient 298 K FINAL STEP IN WATER simulated annealing 1 lowest energy 50 mM TRIS, 50 mM sodium chloride, 90% H2O/10% D2O 90% H2O/10% D2O Goddard chemical shift assignment Sparky Goddard peak picking Sparky Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax processing NMRPipe Alexandre Bonvin structure solution CNS Schwieters, Kuszewski, Tjandra and Clore refinement X-PLOR NIH 600 Bruker INOVA Bruker INOVA 700 Bruker INOVA Bruker INOVA 600 Varian INOVA Varian INOVA 800 Varian INOVA Varian INOVA MET 1 n 1 MET 1 A GLN 2 n 2 GLN 2 A ILE 3 n 3 ILE 3 A PHE 4 n 4 PHE 4 A VAL 5 n 5 VAL 5 A LYS 6 n 6 LYS 6 A THR 7 n 7 THR 7 A LEU 8 n 8 LEU 8 A THR 9 n 9 THR 9 A GLY 10 n 10 GLY 10 A LYS 11 n 11 LYS 11 A THR 12 n 12 THR 12 A ILE 13 n 13 ILE 13 A THR 14 n 14 THR 14 A LEU 15 n 15 LEU 15 A GLU 16 n 16 GLU 16 A VAL 17 n 17 VAL 17 A GLU 18 n 18 GLU 18 A PRO 19 n 19 PRO 19 A SER 20 n 20 SER 20 A ASP 21 n 21 ASP 21 A THR 22 n 22 THR 22 A ILE 23 n 23 ILE 23 A GLU 24 n 24 GLU 24 A ASN 25 n 25 ASN 25 A VAL 26 n 26 VAL 26 A LYS 27 n 27 LYS 27 A ALA 28 n 28 ALA 28 A LYS 29 n 29 LYS 29 A ILE 30 n 30 ILE 30 A GLN 31 n 31 GLN 31 A ASP 32 n 32 ASP 32 A LYS 33 n 33 LYS 33 A GLU 34 n 34 GLU 34 A GLY 35 n 35 GLY 35 A ILE 36 n 36 ILE 36 A PRO 37 n 37 PRO 37 A PRO 38 n 38 PRO 38 A ASP 39 n 39 ASP 39 A GLN 40 n 40 GLN 40 A GLN 41 n 41 GLN 41 A ARG 42 n 42 ARG 42 A LEU 43 n 43 LEU 43 A ILE 44 n 44 ILE 44 A PHE 45 n 45 PHE 45 A ALA 46 n 46 ALA 46 A GLY 47 n 47 GLY 47 A LYS 48 n 48 LYS 48 A GLN 49 n 49 GLN 49 A LEU 50 n 50 LEU 50 A GLU 51 n 51 GLU 51 A ASP 52 n 52 ASP 52 A GLY 53 n 53 GLY 53 A ARG 54 n 54 ARG 54 A THR 55 n 55 THR 55 A LEU 56 n 56 LEU 56 A SER 57 n 57 SER 57 A ASP 58 n 58 ASP 58 A TYR 59 n 59 TYR 59 A ASN 60 n 60 ASN 60 A ILE 61 n 61 ILE 61 A GLN 62 n 62 GLN 62 A LYS 63 n 63 LYS 63 A GLU 64 n 64 GLU 64 A SER 65 n 65 SER 65 A THR 66 n 66 THR 66 A LEU 67 n 67 LEU 67 A HIS 68 n 68 HIS 68 A LEU 69 n 69 LEU 69 A VAL 70 n 70 VAL 70 A LEU 71 n 71 LEU 71 A ARG 72 n 72 ARG 72 A LEU 73 n 73 LEU 73 A ARG 74 n 74 ARG 74 A GLY 75 n 75 GLY 75 A GLY 76 n 76 GLY 76 A SER 453 n 1 SER 453 C ASN 454 n 2 ASN 454 C SER 455 n 3 SER 455 C GLN 456 n 4 GLN 456 C LEU 457 n 5 LEU 457 C ASN 458 n 6 ASN 458 C ALA 459 n 7 ALA 459 C MET 460 n 8 MET 460 C ALA 461 n 9 ALA 461 C HIS 462 n 10 HIS 462 C GLN 463 n 11 GLN 463 C ILE 464 n 12 ILE 464 C GLN 465 n 13 GLN 465 C GLU 466 n 14 GLU 466 C MET 467 n 15 MET 467 C PHE 468 n 16 PHE 468 C PRO 469 n 17 PRO 469 C GLN 470 n 18 GLN 470 C VAL 471 n 19 VAL 471 C PRO 472 n 20 PRO 472 C TYR 473 n 21 TYR 473 C HIS 474 n 22 HIS 474 C LEU 475 n 23 LEU 475 C VAL 476 n 24 VAL 476 C LEU 477 n 25 LEU 477 C GLN 478 n 26 GLN 478 C ASP 479 n 27 ASP 479 C LEU 480 n 28 LEU 480 C GLN 481 n 29 GLN 481 C LEU 482 n 30 LEU 482 C THR 483 n 31 THR 483 C ARG 484 n 32 ARG 484 C SER 485 n 33 SER 485 C VAL 486 n 34 VAL 486 C GLU 487 n 35 GLU 487 C ILE 488 n 36 ILE 488 C THR 489 n 37 THR 489 C THR 490 n 38 THR 490 C ASP 491 n 39 ASP 491 C ASN 492 n 40 ASN 492 C ILE 493 n 41 ILE 493 C LEU 494 n 42 LEU 494 C GLU 495 n 43 GLU 495 C GLY 496 n 44 GLY 496 C ARG 497 n 45 ARG 497 C ILE 498 n 46 ILE 498 C GLN 499 n 47 GLN 499 C VAL 500 n 48 VAL 500 C PRO 501 n 49 PRO 501 C PHE 502 n 50 PHE 502 C PRO 503 n 51 PRO 503 C THR 504 n 52 THR 504 C author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O ILE 13 A O ILE 13 A N VAL 5 A N VAL 5 A N LYS 6 A N LYS 6 A O LEU 67 A O LEU 67 A O HIS 68 A O HIS 68 A N ILE 44 A N ILE 44 A N PHE 45 A N PHE 45 A O LYS 48 A O LYS 48 1 A A HZ1 OE2 LYS GLU 63 64 1.59 3 A A OD2 HZ3 ASP LYS 21 29 1.58 6 A A HZ1 OD1 LYS ASP 27 52 1.60 7 A A OD2 HZ1 ASP LYS 21 29 1.59 8 A A H1 OE2 MET GLU 1 16 1.59 9 A C HH21 OD2 ARG ASP 74 491 1.58 9 A A OD2 HZ1 ASP LYS 21 29 1.58 11 A C HH11 OD1 ARG ASP 42 491 1.59 12 A A OD2 HZ1 ASP LYS 21 29 1.57 12 A A HZ1 OD1 LYS ASP 27 52 1.60 13 A A HZ2 OD1 LYS ASP 27 52 1.59 17 A A OD2 HZ2 ASP LYS 21 29 1.56 20 A A OD2 HZ1 ASP LYS 21 29 1.59 1 C PRO 469 -78.91 36.03 1 C GLN 470 -140.31 -3.51 1 C LEU 482 -90.27 -74.87 1 C GLN 499 -67.69 99.79 1 C PRO 501 -52.44 105.94 2 A ARG 74 -138.50 -56.90 2 C PRO 469 -79.46 29.07 2 C LEU 482 -98.66 -61.83 4 A GLN 62 -103.35 -168.61 5 C ASN 454 58.42 19.53 5 C SER 485 -162.60 114.03 5 C PRO 501 -59.01 109.11 6 A GLN 62 -106.88 -166.35 6 C PRO 469 -85.30 33.05 6 C PRO 501 -68.98 75.33 6 C PRO 503 -59.64 107.62 7 A GLN 62 -102.60 -169.90 7 C PRO 469 -79.64 37.28 7 C GLN 470 -148.50 14.98 7 C PRO 503 -60.96 96.53 8 A GLN 62 -101.33 -165.76 8 C PRO 501 -65.20 90.80 8 C PRO 503 -65.58 96.28 9 A GLN 62 -107.02 -164.28 9 C PRO 501 -54.98 99.85 10 A ALA 46 70.25 -8.22 10 A GLN 62 -122.34 -166.35 11 A GLN 62 -105.17 -167.07 11 C PRO 503 -60.44 97.45 12 C LEU 482 -96.34 -62.01 13 A LYS 33 -92.50 -64.81 13 A GLN 62 -117.86 -157.36 13 C PRO 469 -90.40 30.87 13 C PRO 501 -65.88 81.76 14 A LYS 33 -91.15 -63.46 14 A GLN 62 -102.23 -163.62 14 C PRO 469 -79.21 32.08 14 C GLN 470 -145.59 30.73 15 A ALA 46 71.91 -51.79 15 C PRO 501 -65.39 79.38 16 C PRO 501 -66.12 85.33 17 C PRO 501 -56.70 102.74 17 C PRO 503 -66.34 93.85 18 A GLN 62 -109.24 -160.78 18 A ARG 74 -90.95 37.59 18 C PRO 501 -59.42 109.12 19 A LYS 33 -100.82 -60.32 19 C PRO 501 -53.93 102.52 19 C PRO 503 -69.26 73.66 20 C PRO 469 -81.05 36.83 20 C GLN 470 -142.66 14.58 lowest energy, model Structure of the gp78CUE domain bound to monubiquitin 1 N N 2 N N A THR 22 A THR 22 HELX_P A GLY 35 A GLY 35 1 1 14 A PRO 37 A PRO 37 HELX_P A ASP 39 A ASP 39 5 2 3 C ASN 454 B ASN 2 HELX_P C GLU 466 B GLU 14 1 3 13 C PRO 472 B PRO 20 HELX_P C GLN 481 B GLN 29 1 4 10 C SER 485 B SER 33 HELX_P C GLY 496 B GLY 44 1 5 12 SIGNALING PROTEIN/LIGASE CUE domain, SIGNALING PROTEIN-LIGASE complex UBC_HUMAN UNP 1 1 P0CG48 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG AMFR2_HUMAN UNP 2 453 Q9UKV5 SNSQLNAMAHQIQEMFPQVPYHLVLQDLQLTRSVEITTDNILEGRIQVPFPT 1 76 2LVO 1 76 P0CG48 A 1 1 76 453 504 2LVO 453 504 Q9UKV5 C 2 1 52 5 anti-parallel parallel anti-parallel anti-parallel A ILE 13 A ILE 13 A GLU 16 A GLU 16 A GLN 2 A GLN 2 A THR 7 A THR 7 A THR 66 A THR 66 A LEU 71 A LEU 71 A GLN 41 A GLN 41 A PHE 45 A PHE 45 A LYS 48 A LYS 48 A GLN 49 A GLN 49