1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Kenchappa, C.S.
Heidarsson, P.O.
Garrett, R.A.
Poulsen, F.M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
Nucleic Acids Res.
NARHAD
0389
1362-4962
41
3424
3435
10.1093/nar/gks1465
23325851
Solution properties of the archaeal CRISPR DNA repeat-binding homeodomain protein Cbp2.
2013
10.2210/pdb2lvs/pdb
pdb_00002lvs
12239.304
Putative uncharacterized protein
C7S, C28S, P68T
1
man
polymer
Cbp2
no
no
MPSVNDSLDIVEKLYKDGVPVKEIAKRSNNSMSTVYKALEKLEAMGRIKRRKGRYRQHRRLTEEELATIRELYLKGATVY
EIARQLGRPESTIYYALKKLGLKLE
MPSVNDSLDIVEKLYKDGVPVKEIAKRSNNSMSTVYKALEKLEAMGRIKRRKGRYRQHRRLTEEELATIRELYLKGATVY
EIARQLGRPESTIYYALKKLGLKLE
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
DSM 5456 / JCM 9403
sample
Hbut_0986
415426
Hyperthermus butylicus
562
Escherichia coli
pET28a
vector
citation
pdbx_nmr_software
struct_ref_seq_dif
database_2
pdbx_database_status
repository
Initial release
Data collection
Database references
Database references
Other
1
0
2013-01-23
1
1
2019-12-18
1
2
2023-06-14
_citation.journal_volume
_citation.page_first
_citation.page_last
_citation.pdbx_database_id_PubMed
_citation.title
_pdbx_nmr_software.name
_struct_ref_seq_dif.details
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_nmr_data
BMRB
Y
PDBJ
2012-07-11
REL
REL
REL
REL
structures with the lowest energy
100
20
15
2D 1H-15N HSQC
3D CBCA(CO)NH
3D HNCO
3D HNCA
3D HNCACB
3D HN(CO)CA
3D HCCH-TOCSY
3D 1H-15N NOESY
3D 1H-13C NOESY
3D HN(COCA)CB
0.5-1
mM
[U-100% 13C; U-100% 15N]
10
mM
20
mM
0.02
%
6.5
ambient
298
K
DGSA-distance geometry simulated annealing
1
closest to the average
0.5-1 mM [U-100% 13C; U-100% 15N] Cbp2-1, 10 mM potassium chloride-2, 20 mM potassium dihydrogen phosphate-3, 0.02 % sodium azide-4, 90% H2O/10% D2O
90% H2O/10% D2O
Guntert, Mumenthaler and Wuthrich
structure solution
CYANA
2.1
Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
processing
NMRPipe
Cornilescu, Delaglio and Bax
data analysis
TALOS
Varian
collection
VnmrJ
CCPN
peak picking
CCPN_Analysis
CCPN
chemical shift assignment
CCPN_Analysis
Bhattacharya and Montelione
data analysis
PSVS
refinement
CYANA
750
Varian
INOVA
Varian INOVA
800
Varian
INOVA
Varian INOVA
MET
1
n
1
MET
1
A
PRO
2
n
2
PRO
2
A
SER
3
n
3
SER
3
A
VAL
4
n
4
VAL
4
A
ASN
5
n
5
ASN
5
A
ASP
6
n
6
ASP
6
A
SER
7
n
7
SER
7
A
LEU
8
n
8
LEU
8
A
ASP
9
n
9
ASP
9
A
ILE
10
n
10
ILE
10
A
VAL
11
n
11
VAL
11
A
GLU
12
n
12
GLU
12
A
LYS
13
n
13
LYS
13
A
LEU
14
n
14
LEU
14
A
TYR
15
n
15
TYR
15
A
LYS
16
n
16
LYS
16
A
ASP
17
n
17
ASP
17
A
GLY
18
n
18
GLY
18
A
VAL
19
n
19
VAL
19
A
PRO
20
n
20
PRO
20
A
VAL
21
n
21
VAL
21
A
LYS
22
n
22
LYS
22
A
GLU
23
n
23
GLU
23
A
ILE
24
n
24
ILE
24
A
ALA
25
n
25
ALA
25
A
LYS
26
n
26
LYS
26
A
ARG
27
n
27
ARG
27
A
SER
28
n
28
SER
28
A
ASN
29
n
29
ASN
29
A
ASN
30
n
30
ASN
30
A
SER
31
n
31
SER
31
A
MET
32
n
32
MET
32
A
SER
33
n
33
SER
33
A
THR
34
n
34
THR
34
A
VAL
35
n
35
VAL
35
A
TYR
36
n
36
TYR
36
A
LYS
37
n
37
LYS
37
A
ALA
38
n
38
ALA
38
A
LEU
39
n
39
LEU
39
A
GLU
40
n
40
GLU
40
A
LYS
41
n
41
LYS
41
A
LEU
42
n
42
LEU
42
A
GLU
43
n
43
GLU
43
A
ALA
44
n
44
ALA
44
A
MET
45
n
45
MET
45
A
GLY
46
n
46
GLY
46
A
ARG
47
n
47
ARG
47
A
ILE
48
n
48
ILE
48
A
LYS
49
n
49
LYS
49
A
ARG
50
n
50
ARG
50
A
ARG
51
n
51
ARG
51
A
LYS
52
n
52
LYS
52
A
GLY
53
n
53
GLY
53
A
ARG
54
n
54
ARG
54
A
TYR
55
n
55
TYR
55
A
ARG
56
n
56
ARG
56
A
GLN
57
n
57
GLN
57
A
HIS
58
n
58
HIS
58
A
ARG
59
n
59
ARG
59
A
ARG
60
n
60
ARG
60
A
LEU
61
n
61
LEU
61
A
THR
62
n
62
THR
62
A
GLU
63
n
63
GLU
63
A
GLU
64
n
64
GLU
64
A
GLU
65
n
65
GLU
65
A
LEU
66
n
66
LEU
66
A
ALA
67
n
67
ALA
67
A
THR
68
n
68
THR
68
A
ILE
69
n
69
ILE
69
A
ARG
70
n
70
ARG
70
A
GLU
71
n
71
GLU
71
A
LEU
72
n
72
LEU
72
A
TYR
73
n
73
TYR
73
A
LEU
74
n
74
LEU
74
A
LYS
75
n
75
LYS
75
A
GLY
76
n
76
GLY
76
A
ALA
77
n
77
ALA
77
A
THR
78
n
78
THR
78
A
VAL
79
n
79
VAL
79
A
TYR
80
n
80
TYR
80
A
GLU
81
n
81
GLU
81
A
ILE
82
n
82
ILE
82
A
ALA
83
n
83
ALA
83
A
ARG
84
n
84
ARG
84
A
GLN
85
n
85
GLN
85
A
LEU
86
n
86
LEU
86
A
GLY
87
n
87
GLY
87
A
ARG
88
n
88
ARG
88
A
PRO
89
n
89
PRO
89
A
GLU
90
n
90
GLU
90
A
SER
91
n
91
SER
91
A
THR
92
n
92
THR
92
A
ILE
93
n
93
ILE
93
A
TYR
94
n
94
TYR
94
A
TYR
95
n
95
TYR
95
A
ALA
96
n
96
ALA
96
A
LEU
97
n
97
LEU
97
A
LYS
98
n
98
LYS
98
A
LYS
99
n
99
LYS
99
A
LEU
100
n
100
LEU
100
A
GLY
101
n
101
GLY
101
A
LEU
102
n
102
LEU
102
A
LYS
103
n
103
LYS
103
A
LEU
104
n
104
LEU
104
A
GLU
105
n
105
GLU
105
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
HIS
58
-96.22
42.97
1
A
GLU
90
176.70
-43.42
2
A
ARG
51
59.33
77.19
2
A
ARG
54
-170.28
114.91
2
A
TYR
55
-152.51
-59.52
2
A
ARG
56
61.21
97.23
2
A
HIS
58
-143.46
-63.47
2
A
ARG
59
58.19
84.71
2
A
ARG
60
-172.91
49.84
2
A
GLU
90
176.52
-41.12
3
A
ILE
48
-94.79
36.42
3
A
LYS
52
61.72
172.31
3
A
TYR
55
-78.37
-72.79
3
A
ARG
56
54.06
-170.84
3
A
GLN
57
-101.74
-68.36
3
A
LEU
61
-62.97
-70.64
3
A
LYS
103
63.16
68.37
4
A
ILE
48
-94.94
36.50
4
A
GLN
57
59.44
92.05
4
A
HIS
58
-158.95
43.10
4
A
ARG
59
-169.85
-42.00
4
A
ARG
60
63.12
162.07
4
A
ALA
77
-57.52
170.71
4
A
GLU
90
177.78
-43.89
5
A
ARG
54
-143.90
-58.30
5
A
ARG
56
-172.23
45.13
5
A
ARG
60
-179.13
140.98
5
A
LEU
102
69.42
78.90
5
A
LYS
103
-164.81
27.06
6
A
ARG
51
52.23
87.49
6
A
GLN
57
-178.11
-48.91
6
A
HIS
58
69.17
-75.91
6
A
ARG
60
-91.08
-74.48
6
A
LEU
61
-150.70
-74.51
6
A
LEU
104
59.12
86.79
7
A
ARG
50
58.27
-178.60
7
A
ARG
51
58.33
90.04
7
A
TYR
55
-59.26
173.36
7
A
ARG
56
-66.31
97.34
7
A
HIS
58
-63.33
-177.82
7
A
ARG
60
63.59
106.33
7
A
ALA
77
-58.17
171.98
7
A
GLU
90
175.24
-44.55
8
A
TYR
55
-118.80
76.18
8
A
ARG
56
-167.82
53.14
8
A
ARG
60
67.42
-78.09
8
A
LEU
61
-153.73
-75.67
8
A
ALA
77
-59.87
171.95
8
A
GLU
90
176.49
-38.11
8
A
LYS
103
-52.88
103.32
9
A
ARG
56
-179.28
-37.54
9
A
ARG
59
-62.48
-173.62
9
A
GLU
90
176.42
-42.14
10
A
ARG
50
-59.80
-177.68
10
A
LYS
52
-155.98
85.91
10
A
ARG
56
60.08
76.33
10
A
HIS
58
-107.64
-66.38
11
A
ARG
51
-172.86
135.62
11
A
ARG
56
-139.03
-72.11
11
A
GLN
57
60.45
172.77
11
A
HIS
58
-144.52
-74.43
11
A
ARG
59
-176.60
-40.96
11
A
ARG
60
63.77
-82.01
11
A
LEU
61
-150.08
-75.17
12
A
ILE
48
-94.94
36.06
12
A
ARG
50
-166.27
103.47
12
A
TYR
55
62.75
104.09
12
A
HIS
58
-176.60
144.69
12
A
ARG
60
-143.15
-69.86
12
A
LEU
61
-178.65
-47.07
12
A
PRO
89
-69.83
-170.93
13
A
ARG
50
62.94
-170.19
13
A
TYR
55
-141.50
37.56
13
A
HIS
58
-126.43
-58.01
13
A
ARG
59
-65.60
96.99
13
A
ALA
77
-59.28
172.15
13
A
PRO
89
-69.76
3.53
13
A
GLU
90
75.23
-59.22
13
A
LYS
103
-55.35
101.42
14
A
ILE
48
-94.95
36.08
14
A
ARG
50
-166.79
65.90
14
A
ARG
54
-158.46
26.90
14
A
ARG
60
-179.30
130.71
14
A
PRO
89
-69.79
2.50
14
A
GLU
90
77.01
-58.62
15
A
ILE
48
-94.88
36.06
15
A
TYR
55
-171.92
-51.38
15
A
ARG
56
58.80
179.93
15
A
HIS
58
-157.48
66.04
15
A
ARG
60
-112.52
-74.64
15
A
LEU
61
-137.30
-75.28
15
A
PRO
89
-69.80
2.54
15
A
GLU
90
76.86
-58.54
15
A
LYS
103
52.15
88.72
16
A
ARG
50
-178.09
91.91
16
A
ARG
54
-169.77
54.37
16
A
ARG
60
-173.28
129.01
16
A
LEU
61
-136.26
-74.60
16
A
PRO
89
-69.77
2.03
16
A
GLU
90
76.93
-58.33
16
A
LEU
102
68.21
66.70
16
A
LYS
103
-145.92
16.35
17
A
LYS
52
-122.29
-62.97
17
A
HIS
58
-164.70
-169.90
17
A
ARG
59
63.32
101.05
17
A
ARG
60
-106.52
-68.33
17
A
LEU
61
-131.89
-74.44
17
A
ALA
77
-58.69
172.10
17
A
PRO
89
-69.79
2.80
17
A
GLU
90
76.94
-59.04
17
A
LEU
104
-124.45
-52.92
18
A
ARG
50
-73.00
-73.29
18
A
ARG
51
-178.67
-72.28
18
A
ARG
54
-176.27
129.24
18
A
GLN
57
-178.89
137.92
18
A
HIS
58
-148.48
31.19
18
A
ARG
59
53.14
-171.86
18
A
ARG
60
-174.59
-169.57
18
A
LEU
61
-122.96
-75.51
18
A
ALA
77
-59.57
172.08
18
A
GLU
90
176.05
-43.28
18
A
LYS
103
71.39
-69.54
18
A
LEU
104
51.87
86.52
19
A
ARG
59
56.34
-177.27
19
A
GLU
90
172.32
-40.40
19
A
LYS
103
-52.85
102.68
20
A
ILE
48
-95.10
35.94
20
A
ARG
51
60.15
174.37
20
A
TYR
55
62.40
74.35
20
A
GLN
57
59.56
94.70
20
A
ARG
59
-160.28
46.82
20
A
PRO
89
-69.76
-171.65
20
A
LYS
103
-106.24
54.44
closest to the average, model15
NMR solution structure of a CRISPR repeat binding protein
1
N
N
A
SER
3
A
SER
3
HELX_P
A
VAL
19
A
VAL
19
1
1
17
A
PRO
20
A
PRO
20
HELX_P
A
ASN
29
A
ASN
29
1
2
10
A
SER
31
A
SER
31
HELX_P
A
GLY
46
A
GLY
46
1
3
16
A
THR
62
A
THR
62
HELX_P
A
ARG
70
A
ARG
70
1
4
9
A
ARG
70
A
ARG
70
HELX_P
A
GLY
76
A
GLY
76
1
5
7
A
THR
78
A
THR
78
HELX_P
A
GLY
87
A
GLY
87
1
6
10
A
GLU
90
A
GLU
90
HELX_P
A
GLY
101
A
GLY
101
1
7
12
DNA BINDING PROTEIN
DNA BINDING PROTEIN
A2BLH2_HYPBU
UNP
1
1
A2BLH2
MPSVNDCLDIVEKLYKDGVPVKEIAKRCNNSMSTVYKALEKLEAMGRIKRRKGRYRQHRRLTEEELAPIRELYLKGATVY
EIARQLGRPESTIYYALKKLGLK
1
103
2LVS
1
103
A2BLH2
A
1
1
103
1
CYS
engineered mutation
SER
7
2LVS
A
A2BLH2
UNP
7
7
1
CYS
engineered mutation
SER
28
2LVS
A
A2BLH2
UNP
28
28
1
PRO
engineered mutation
THR
68
2LVS
A
A2BLH2
UNP
68
68
1
linker
LEU
104
2LVS
A
A2BLH2
UNP
104
1
linker
GLU
105
2LVS
A
A2BLH2
UNP
105