1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Feng, Y. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Proc.Natl.Acad.Sci.USA PNASA6 0040 0027-8424 110 9565 9570 10.1073/pnas.1306899110 23690600 Structural insights into the N-terminal GIY-YIG endonuclease activity of Arabidopsis glutaredoxin AtGRXS16 in chloroplasts. 2013 10.2210/pdb2lwf/pdb pdb_00002lwf 12907.639 Monothiol glutaredoxin-S16, chloroplastic N-terminal domain 1 man polymer AtGrxS16, CAXIP1-like protein no no MASAVKSLTETELLPITEADSIPSASGVYAVYDKSDELQFVGISRNIAASVSAHLKSVPELCGSVKVGIVEEPDKAVLTQ AWKLWIEEHIKVTGKVPPGNKSGNNTFVKVTLEHHHHHH MASAVKSLTETELLPITEADSIPSASGVYAVYDKSDELQFVGISRNIAASVSAHLKSVPELCGSVKVGIVEEPDKAVLTQ AWKLWIEEHIKVTGKVPPGNKSGNNTFVKVTLEHHHHHH A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n mouse-ear cress,thale-cress sample GRXS16, At2g38270, F16M14.20 3702 Arabidopsis thaliana 469008 Escherichia coli BL21(DE3) plasmid pET22b database_2 pdbx_database_status pdbx_nmr_software struct_ref_seq_dif repository Initial release Database references Database references Database references Data collection Database references Other 1 0 2013-05-22 1 1 2013-06-05 1 2 2013-06-19 1 3 2013-06-26 1 4 2023-06-14 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.status_code_nmr_data _pdbx_nmr_software.name _struct_ref_seq_dif.details BMRB Y RCSB 2012-07-28 REL REL REL REL structures with the lowest energy 100 20 2D 1H-15N HSQC 2D 1H-13C HSQC 3D CBCA(CO)NH 3D HNCA 3D HNCACB 3D HNCO 3D HBHA(CO)NH 3D HCCH-TOCSY 3D HCCH-COSY 3D CCH-TOCSY 3D 1H-15N TOCSY 3D 1H-15N NOESY 3D 1H-13C NOESY aliphatic 3D 1H-13C NOESY aromatic 0.5-1.0 mM [U-13C; U-15N] 50 mM 10 mM 0.02 % 0.1 v/v [U-2H] 0.05 7.0 ambient 298 K molecular dynamics, simulated annealing 1 lowest energy 0.5-1.0 mM [U-13C; U-15N] protein, 50 mM sodium phosphate, 10 mM DTT, 0.02 % DSS, 0.1 v/v [U-2H] D2O, 90% H2O/10% D2O 90% H2O/10% D2O Bruker Biospin collection XwinNMR Accelrys Software Inc. processing Felix Johnson, One Moon Scientific peak picking NMRView Johnson, One Moon Scientific chemical shift assignment NMRView Johnson, One Moon Scientific data analysis NMRView Brunger, Adams, Clore, Gros, Nilges and Read structure solution CNS Brunger, Adams, Clore, Gros, Nilges and Read refinement CNS 600 Bruker DMX Bruker DMX MET 62 n 1 MET 62 A ALA 63 n 2 ALA 63 A SER 64 n 3 SER 64 A ALA 65 n 4 ALA 65 A VAL 66 n 5 VAL 66 A LYS 67 n 6 LYS 67 A SER 68 n 7 SER 68 A LEU 69 n 8 LEU 69 A THR 70 n 9 THR 70 A GLU 71 n 10 GLU 71 A THR 72 n 11 THR 72 A GLU 73 n 12 GLU 73 A LEU 74 n 13 LEU 74 A LEU 75 n 14 LEU 75 A PRO 76 n 15 PRO 76 A ILE 77 n 16 ILE 77 A THR 78 n 17 THR 78 A GLU 79 n 18 GLU 79 A ALA 80 n 19 ALA 80 A ASP 81 n 20 ASP 81 A SER 82 n 21 SER 82 A ILE 83 n 22 ILE 83 A PRO 84 n 23 PRO 84 A SER 85 n 24 SER 85 A ALA 86 n 25 ALA 86 A SER 87 n 26 SER 87 A GLY 88 n 27 GLY 88 A VAL 89 n 28 VAL 89 A TYR 90 n 29 TYR 90 A ALA 91 n 30 ALA 91 A VAL 92 n 31 VAL 92 A TYR 93 n 32 TYR 93 A ASP 94 n 33 ASP 94 A LYS 95 n 34 LYS 95 A SER 96 n 35 SER 96 A ASP 97 n 36 ASP 97 A GLU 98 n 37 GLU 98 A LEU 99 n 38 LEU 99 A GLN 100 n 39 GLN 100 A PHE 101 n 40 PHE 101 A VAL 102 n 41 VAL 102 A GLY 103 n 42 GLY 103 A ILE 104 n 43 ILE 104 A SER 105 n 44 SER 105 A ARG 106 n 45 ARG 106 A ASN 107 n 46 ASN 107 A ILE 108 n 47 ILE 108 A ALA 109 n 48 ALA 109 A ALA 110 n 49 ALA 110 A SER 111 n 50 SER 111 A VAL 112 n 51 VAL 112 A SER 113 n 52 SER 113 A ALA 114 n 53 ALA 114 A HIS 115 n 54 HIS 115 A LEU 116 n 55 LEU 116 A LYS 117 n 56 LYS 117 A SER 118 n 57 SER 118 A VAL 119 n 58 VAL 119 A PRO 120 n 59 PRO 120 A GLU 121 n 60 GLU 121 A LEU 122 n 61 LEU 122 A CYS 123 n 62 CYS 123 A GLY 124 n 63 GLY 124 A SER 125 n 64 SER 125 A VAL 126 n 65 VAL 126 A LYS 127 n 66 LYS 127 A VAL 128 n 67 VAL 128 A GLY 129 n 68 GLY 129 A ILE 130 n 69 ILE 130 A VAL 131 n 70 VAL 131 A GLU 132 n 71 GLU 132 A GLU 133 n 72 GLU 133 A PRO 134 n 73 PRO 134 A ASP 135 n 74 ASP 135 A LYS 136 n 75 LYS 136 A ALA 137 n 76 ALA 137 A VAL 138 n 77 VAL 138 A LEU 139 n 78 LEU 139 A THR 140 n 79 THR 140 A GLN 141 n 80 GLN 141 A ALA 142 n 81 ALA 142 A TRP 143 n 82 TRP 143 A LYS 144 n 83 LYS 144 A LEU 145 n 84 LEU 145 A TRP 146 n 85 TRP 146 A ILE 147 n 86 ILE 147 A GLU 148 n 87 GLU 148 A GLU 149 n 88 GLU 149 A HIS 150 n 89 HIS 150 A ILE 151 n 90 ILE 151 A LYS 152 n 91 LYS 152 A VAL 153 n 92 VAL 153 A THR 154 n 93 THR 154 A GLY 155 n 94 GLY 155 A LYS 156 n 95 LYS 156 A VAL 157 n 96 VAL 157 A PRO 158 n 97 PRO 158 A PRO 159 n 98 PRO 159 A GLY 160 n 99 GLY 160 A ASN 161 n 100 ASN 161 A LYS 162 n 101 LYS 162 A SER 163 n 102 SER 163 A GLY 164 n 103 GLY 164 A ASN 165 n 104 ASN 165 A ASN 166 n 105 ASN 166 A THR 167 n 106 THR 167 A PHE 168 n 107 PHE 168 A VAL 169 n 108 VAL 169 A LYS 170 n 109 LYS 170 A VAL 171 n 110 VAL 171 A THR 172 n 111 THR 172 A LEU 173 n 112 LEU 173 A GLU 174 n 113 GLU 174 A HIS 175 n 114 HIS 175 A HIS 176 n 115 HIS 176 A HIS 177 n 116 HIS 177 A HIS 178 n 117 HIS 178 A HIS 179 n 118 HIS 179 A HIS 180 n 119 HIS 180 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N LEU 75 A N LEU 14 A O VAL 126 A O VAL 65 A O GLY 129 A O GLY 68 A N VAL 89 A N VAL 28 A N VAL 92 A N VAL 31 A O PHE 101 A O PHE 40 7 A A HZ2 OE1 LYS GLU 144 148 1.60 11 A A HZ3 OE1 LYS GLU 144 148 1.60 12 A A H1 OE1 MET GLU 62 73 1.57 15 A A H3 OE1 MET GLU 62 132 1.58 15 A A HZ3 OE1 LYS GLU 136 174 1.60 17 A A HZ1 OE2 LYS GLU 144 148 1.55 17 A A OE2 HZ1 GLU LYS 149 152 1.59 17 A A HZ1 OE1 LYS GLU 67 71 1.60 19 A A OE1 HZ2 GLU LYS 98 156 1.59 5 A ARG 106 0.086 SIDE CHAIN 10 A ARG 106 0.074 SIDE CHAIN 1 A SER 64 -167.29 -164.52 1 A GLU 79 -93.16 54.20 1 A SER 85 -92.90 39.01 1 A ASP 97 62.33 67.75 1 A THR 154 -131.70 -30.21 1 A GLU 174 45.70 72.56 1 A HIS 175 -148.24 47.33 1 A HIS 178 -176.78 89.43 2 A LYS 67 -95.39 -82.01 2 A GLU 79 -92.97 30.58 2 A SER 85 -99.16 49.51 2 A ASP 94 -79.94 -167.93 2 A PRO 134 -84.84 34.03 2 A THR 167 -55.62 -4.85 2 A THR 172 67.40 -59.65 2 A GLU 174 178.99 172.53 3 A GLU 79 -94.14 38.93 3 A ASP 94 -79.52 -168.54 3 A PRO 134 -86.11 36.24 3 A SER 163 -55.33 109.78 3 A VAL 171 -128.46 -136.99 4 A GLU 79 -107.96 53.79 4 A PRO 120 -77.53 24.64 4 A PRO 134 -76.39 46.75 4 A GLU 174 70.15 -62.12 4 A HIS 179 66.62 88.22 5 A SER 64 -140.84 -68.72 5 A ALA 65 38.84 96.52 5 A GLU 79 -98.49 53.68 5 A SER 85 -92.97 31.68 5 A CYS 123 -67.95 96.66 5 A VAL 157 -158.60 77.37 5 A LYS 170 77.01 135.79 5 A LEU 173 76.07 -179.78 5 A HIS 176 -56.79 99.15 5 A HIS 179 -125.29 -70.21 6 A ALA 65 79.46 145.62 6 A LYS 67 -86.52 -77.48 6 A GLU 79 -96.95 54.13 6 A ASP 94 -78.64 -166.96 6 A PRO 120 -76.65 24.47 6 A VAL 157 41.13 75.99 6 A LYS 170 -87.50 33.40 6 A HIS 178 76.69 179.42 7 A ALA 65 64.01 -173.91 7 A LYS 67 -61.39 -77.49 7 A GLU 79 -112.93 53.26 7 A ASP 94 -78.64 -168.16 7 A PRO 120 -74.07 24.13 7 A PRO 134 -82.31 32.47 7 A LEU 173 68.31 164.42 7 A HIS 175 70.72 -44.02 8 A ALA 63 -140.17 -58.84 8 A SER 64 -163.70 98.35 8 A GLU 79 -103.49 53.79 8 A PRO 134 -82.91 32.92 8 A LYS 170 67.33 134.96 8 A HIS 175 53.74 80.44 9 A ALA 63 -169.29 -35.83 9 A GLU 79 -104.85 53.15 9 A ASP 94 -79.16 -169.44 9 A LYS 170 -68.88 1.40 9 A HIS 179 -179.54 -39.11 10 A LYS 67 -79.80 -152.55 10 A PRO 120 -73.53 21.12 10 A PRO 134 -76.83 39.29 10 A SER 163 -102.95 -152.72 10 A ASN 166 -103.34 -79.54 10 A VAL 171 53.56 -79.74 10 A HIS 179 -100.90 -162.49 11 A ALA 63 -105.89 77.70 11 A GLU 79 -109.63 54.25 11 A SER 85 -94.05 30.65 11 A PRO 134 -78.32 39.41 11 A LYS 170 64.09 -165.49 11 A THR 172 63.17 -47.88 11 A HIS 178 -146.58 -60.39 12 A LYS 67 -128.39 -72.59 12 A GLU 79 -94.56 56.09 12 A SER 85 -98.60 34.21 12 A PRO 134 -82.72 37.92 12 A HIS 178 -154.85 23.33 13 A GLU 79 -101.62 53.07 13 A SER 85 -95.50 32.79 13 A PRO 120 -79.27 32.56 13 A LYS 162 -76.01 -82.10 13 A HIS 175 -121.88 -71.66 14 A GLU 79 -102.09 53.57 14 A VAL 157 -158.43 86.87 14 A LYS 170 73.69 -71.85 14 A VAL 171 58.68 76.75 14 A HIS 179 -161.79 -49.53 15 A ALA 63 -65.34 99.97 15 A LYS 67 -104.68 -86.77 15 A GLU 79 -107.26 52.77 15 A PRO 134 -88.80 32.37 15 A VAL 157 -155.84 70.96 15 A ASN 166 -131.63 -68.33 15 A LYS 170 69.02 88.04 15 A THR 172 -178.59 -44.00 15 A GLU 174 54.51 100.51 15 A HIS 178 71.35 116.09 16 A GLU 79 -97.85 55.48 16 A SER 85 -89.58 36.38 16 A ASP 94 -78.92 -167.19 16 A PRO 134 -77.84 45.41 16 A THR 154 -130.88 -36.11 16 A LYS 170 -167.16 109.06 17 A SER 64 71.37 149.33 17 A GLU 79 -90.34 53.91 17 A PRO 134 -88.90 37.74 17 A THR 154 -138.01 -31.27 17 A SER 163 71.13 112.53 17 A LYS 170 77.51 -61.81 17 A HIS 175 71.27 159.69 17 A HIS 177 -69.79 97.29 18 A LYS 67 -88.06 -70.13 18 A GLU 79 -95.14 50.89 18 A SER 85 -95.30 34.74 18 A PRO 134 -79.65 31.52 18 A LYS 156 -91.47 -70.58 18 A VAL 157 41.40 83.27 18 A LYS 162 -64.26 -71.54 18 A SER 163 178.35 151.85 18 A LYS 170 65.81 -83.53 19 A GLU 79 -97.95 47.89 19 A PRO 120 -68.84 14.28 19 A LYS 170 -176.16 140.51 19 A HIS 178 70.43 109.06 20 A SER 64 -95.03 31.47 20 A GLU 79 -99.43 52.97 20 A SER 85 -93.69 35.72 20 A ASP 97 61.51 62.94 20 A PRO 120 -74.84 29.75 20 A LYS 156 -78.95 -74.94 20 A LYS 170 -92.38 36.80 20 A GLU 174 -99.46 32.94 Structure of N-terminal domain of a plant Grx 1 N N A SER 68 A SER 7 HELX_P A THR 72 A THR 11 5 1 5 A GLU 79 A GLU 18 HELX_P A ILE 83 A ILE 22 5 2 5 A ASN 107 A ASN 46 HELX_P A VAL 119 A VAL 58 1 3 13 A PRO 120 A PRO 59 HELX_P A CYS 123 A CYS 62 5 4 4 A ASP 135 A ASP 74 HELX_P A THR 154 A THR 93 1 5 20 HYDROLASE Nuclease, Glutaredoxin, HYDROLASE GRS16_ARATH UNP 1 63 Q8H7F6 ASAVKSLTETELLPITEADSIPSASGVYAVYDKSDELQFVGISRNIAASVSAHLKSVPELCGSVKVGIVEEPDKAVLTQA WKLWIEEHIKVTGKVPPGNKSGNNTFVK 63 170 2LWF 63 170 Q8H7F6 A 1 2 109 1 initiating methionine MET 62 2LWF A Q8H7F6 UNP 1 1 expression tag VAL 171 2LWF A Q8H7F6 UNP 110 1 expression tag THR 172 2LWF A Q8H7F6 UNP 111 1 expression tag LEU 173 2LWF A Q8H7F6 UNP 112 1 expression tag GLU 174 2LWF A Q8H7F6 UNP 113 1 expression tag HIS 175 2LWF A Q8H7F6 UNP 114 1 expression tag HIS 176 2LWF A Q8H7F6 UNP 115 1 expression tag HIS 177 2LWF A Q8H7F6 UNP 116 1 expression tag HIS 178 2LWF A Q8H7F6 UNP 117 1 expression tag HIS 179 2LWF A Q8H7F6 UNP 118 1 expression tag HIS 180 2LWF A Q8H7F6 UNP 119 4 anti-parallel anti-parallel anti-parallel A GLU 73 A GLU 12 A PRO 76 A PRO 15 A SER 125 A SER 64 A ILE 130 A ILE 69 A GLY 88 A GLY 27 A TYR 93 A TYR 32 A LEU 99 A LEU 38 A SER 105 A SER 44