1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Feng, Y.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
110
9565
9570
10.1073/pnas.1306899110
23690600
Structural insights into the N-terminal GIY-YIG endonuclease activity of Arabidopsis glutaredoxin AtGRXS16 in chloroplasts.
2013
10.2210/pdb2lwf/pdb
pdb_00002lwf
12907.639
Monothiol glutaredoxin-S16, chloroplastic
N-terminal domain
1
man
polymer
AtGrxS16, CAXIP1-like protein
no
no
MASAVKSLTETELLPITEADSIPSASGVYAVYDKSDELQFVGISRNIAASVSAHLKSVPELCGSVKVGIVEEPDKAVLTQ
AWKLWIEEHIKVTGKVPPGNKSGNNTFVKVTLEHHHHHH
MASAVKSLTETELLPITEADSIPSASGVYAVYDKSDELQFVGISRNIAASVSAHLKSVPELCGSVKVGIVEEPDKAVLTQ
AWKLWIEEHIKVTGKVPPGNKSGNNTFVKVTLEHHHHHH
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
mouse-ear cress,thale-cress
sample
GRXS16, At2g38270, F16M14.20
3702
Arabidopsis thaliana
469008
Escherichia coli
BL21(DE3)
plasmid
pET22b
database_2
pdbx_database_status
pdbx_nmr_software
struct_ref_seq_dif
repository
Initial release
Database references
Database references
Database references
Data collection
Database references
Other
1
0
2013-05-22
1
1
2013-06-05
1
2
2013-06-19
1
3
2013-06-26
1
4
2023-06-14
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_nmr_data
_pdbx_nmr_software.name
_struct_ref_seq_dif.details
BMRB
Y
RCSB
2012-07-28
REL
REL
REL
REL
structures with the lowest energy
100
20
2D 1H-15N HSQC
2D 1H-13C HSQC
3D CBCA(CO)NH
3D HNCA
3D HNCACB
3D HNCO
3D HBHA(CO)NH
3D HCCH-TOCSY
3D HCCH-COSY
3D CCH-TOCSY
3D 1H-15N TOCSY
3D 1H-15N NOESY
3D 1H-13C NOESY aliphatic
3D 1H-13C NOESY aromatic
0.5-1.0
mM
[U-13C; U-15N]
50
mM
10
mM
0.02
%
0.1
v/v
[U-2H]
0.05
7.0
ambient
298
K
molecular dynamics, simulated annealing
1
lowest energy
0.5-1.0 mM [U-13C; U-15N] protein, 50 mM sodium phosphate, 10 mM DTT, 0.02 % DSS, 0.1 v/v [U-2H] D2O, 90% H2O/10% D2O
90% H2O/10% D2O
Bruker Biospin
collection
XwinNMR
Accelrys Software Inc.
processing
Felix
Johnson, One Moon Scientific
peak picking
NMRView
Johnson, One Moon Scientific
chemical shift assignment
NMRView
Johnson, One Moon Scientific
data analysis
NMRView
Brunger, Adams, Clore, Gros, Nilges and Read
structure solution
CNS
Brunger, Adams, Clore, Gros, Nilges and Read
refinement
CNS
600
Bruker
DMX
Bruker DMX
MET
62
n
1
MET
62
A
ALA
63
n
2
ALA
63
A
SER
64
n
3
SER
64
A
ALA
65
n
4
ALA
65
A
VAL
66
n
5
VAL
66
A
LYS
67
n
6
LYS
67
A
SER
68
n
7
SER
68
A
LEU
69
n
8
LEU
69
A
THR
70
n
9
THR
70
A
GLU
71
n
10
GLU
71
A
THR
72
n
11
THR
72
A
GLU
73
n
12
GLU
73
A
LEU
74
n
13
LEU
74
A
LEU
75
n
14
LEU
75
A
PRO
76
n
15
PRO
76
A
ILE
77
n
16
ILE
77
A
THR
78
n
17
THR
78
A
GLU
79
n
18
GLU
79
A
ALA
80
n
19
ALA
80
A
ASP
81
n
20
ASP
81
A
SER
82
n
21
SER
82
A
ILE
83
n
22
ILE
83
A
PRO
84
n
23
PRO
84
A
SER
85
n
24
SER
85
A
ALA
86
n
25
ALA
86
A
SER
87
n
26
SER
87
A
GLY
88
n
27
GLY
88
A
VAL
89
n
28
VAL
89
A
TYR
90
n
29
TYR
90
A
ALA
91
n
30
ALA
91
A
VAL
92
n
31
VAL
92
A
TYR
93
n
32
TYR
93
A
ASP
94
n
33
ASP
94
A
LYS
95
n
34
LYS
95
A
SER
96
n
35
SER
96
A
ASP
97
n
36
ASP
97
A
GLU
98
n
37
GLU
98
A
LEU
99
n
38
LEU
99
A
GLN
100
n
39
GLN
100
A
PHE
101
n
40
PHE
101
A
VAL
102
n
41
VAL
102
A
GLY
103
n
42
GLY
103
A
ILE
104
n
43
ILE
104
A
SER
105
n
44
SER
105
A
ARG
106
n
45
ARG
106
A
ASN
107
n
46
ASN
107
A
ILE
108
n
47
ILE
108
A
ALA
109
n
48
ALA
109
A
ALA
110
n
49
ALA
110
A
SER
111
n
50
SER
111
A
VAL
112
n
51
VAL
112
A
SER
113
n
52
SER
113
A
ALA
114
n
53
ALA
114
A
HIS
115
n
54
HIS
115
A
LEU
116
n
55
LEU
116
A
LYS
117
n
56
LYS
117
A
SER
118
n
57
SER
118
A
VAL
119
n
58
VAL
119
A
PRO
120
n
59
PRO
120
A
GLU
121
n
60
GLU
121
A
LEU
122
n
61
LEU
122
A
CYS
123
n
62
CYS
123
A
GLY
124
n
63
GLY
124
A
SER
125
n
64
SER
125
A
VAL
126
n
65
VAL
126
A
LYS
127
n
66
LYS
127
A
VAL
128
n
67
VAL
128
A
GLY
129
n
68
GLY
129
A
ILE
130
n
69
ILE
130
A
VAL
131
n
70
VAL
131
A
GLU
132
n
71
GLU
132
A
GLU
133
n
72
GLU
133
A
PRO
134
n
73
PRO
134
A
ASP
135
n
74
ASP
135
A
LYS
136
n
75
LYS
136
A
ALA
137
n
76
ALA
137
A
VAL
138
n
77
VAL
138
A
LEU
139
n
78
LEU
139
A
THR
140
n
79
THR
140
A
GLN
141
n
80
GLN
141
A
ALA
142
n
81
ALA
142
A
TRP
143
n
82
TRP
143
A
LYS
144
n
83
LYS
144
A
LEU
145
n
84
LEU
145
A
TRP
146
n
85
TRP
146
A
ILE
147
n
86
ILE
147
A
GLU
148
n
87
GLU
148
A
GLU
149
n
88
GLU
149
A
HIS
150
n
89
HIS
150
A
ILE
151
n
90
ILE
151
A
LYS
152
n
91
LYS
152
A
VAL
153
n
92
VAL
153
A
THR
154
n
93
THR
154
A
GLY
155
n
94
GLY
155
A
LYS
156
n
95
LYS
156
A
VAL
157
n
96
VAL
157
A
PRO
158
n
97
PRO
158
A
PRO
159
n
98
PRO
159
A
GLY
160
n
99
GLY
160
A
ASN
161
n
100
ASN
161
A
LYS
162
n
101
LYS
162
A
SER
163
n
102
SER
163
A
GLY
164
n
103
GLY
164
A
ASN
165
n
104
ASN
165
A
ASN
166
n
105
ASN
166
A
THR
167
n
106
THR
167
A
PHE
168
n
107
PHE
168
A
VAL
169
n
108
VAL
169
A
LYS
170
n
109
LYS
170
A
VAL
171
n
110
VAL
171
A
THR
172
n
111
THR
172
A
LEU
173
n
112
LEU
173
A
GLU
174
n
113
GLU
174
A
HIS
175
n
114
HIS
175
A
HIS
176
n
115
HIS
176
A
HIS
177
n
116
HIS
177
A
HIS
178
n
117
HIS
178
A
HIS
179
n
118
HIS
179
A
HIS
180
n
119
HIS
180
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LEU
75
A
N
LEU
14
A
O
VAL
126
A
O
VAL
65
A
O
GLY
129
A
O
GLY
68
A
N
VAL
89
A
N
VAL
28
A
N
VAL
92
A
N
VAL
31
A
O
PHE
101
A
O
PHE
40
7
A
A
HZ2
OE1
LYS
GLU
144
148
1.60
11
A
A
HZ3
OE1
LYS
GLU
144
148
1.60
12
A
A
H1
OE1
MET
GLU
62
73
1.57
15
A
A
H3
OE1
MET
GLU
62
132
1.58
15
A
A
HZ3
OE1
LYS
GLU
136
174
1.60
17
A
A
HZ1
OE2
LYS
GLU
144
148
1.55
17
A
A
OE2
HZ1
GLU
LYS
149
152
1.59
17
A
A
HZ1
OE1
LYS
GLU
67
71
1.60
19
A
A
OE1
HZ2
GLU
LYS
98
156
1.59
5
A
ARG
106
0.086
SIDE CHAIN
10
A
ARG
106
0.074
SIDE CHAIN
1
A
SER
64
-167.29
-164.52
1
A
GLU
79
-93.16
54.20
1
A
SER
85
-92.90
39.01
1
A
ASP
97
62.33
67.75
1
A
THR
154
-131.70
-30.21
1
A
GLU
174
45.70
72.56
1
A
HIS
175
-148.24
47.33
1
A
HIS
178
-176.78
89.43
2
A
LYS
67
-95.39
-82.01
2
A
GLU
79
-92.97
30.58
2
A
SER
85
-99.16
49.51
2
A
ASP
94
-79.94
-167.93
2
A
PRO
134
-84.84
34.03
2
A
THR
167
-55.62
-4.85
2
A
THR
172
67.40
-59.65
2
A
GLU
174
178.99
172.53
3
A
GLU
79
-94.14
38.93
3
A
ASP
94
-79.52
-168.54
3
A
PRO
134
-86.11
36.24
3
A
SER
163
-55.33
109.78
3
A
VAL
171
-128.46
-136.99
4
A
GLU
79
-107.96
53.79
4
A
PRO
120
-77.53
24.64
4
A
PRO
134
-76.39
46.75
4
A
GLU
174
70.15
-62.12
4
A
HIS
179
66.62
88.22
5
A
SER
64
-140.84
-68.72
5
A
ALA
65
38.84
96.52
5
A
GLU
79
-98.49
53.68
5
A
SER
85
-92.97
31.68
5
A
CYS
123
-67.95
96.66
5
A
VAL
157
-158.60
77.37
5
A
LYS
170
77.01
135.79
5
A
LEU
173
76.07
-179.78
5
A
HIS
176
-56.79
99.15
5
A
HIS
179
-125.29
-70.21
6
A
ALA
65
79.46
145.62
6
A
LYS
67
-86.52
-77.48
6
A
GLU
79
-96.95
54.13
6
A
ASP
94
-78.64
-166.96
6
A
PRO
120
-76.65
24.47
6
A
VAL
157
41.13
75.99
6
A
LYS
170
-87.50
33.40
6
A
HIS
178
76.69
179.42
7
A
ALA
65
64.01
-173.91
7
A
LYS
67
-61.39
-77.49
7
A
GLU
79
-112.93
53.26
7
A
ASP
94
-78.64
-168.16
7
A
PRO
120
-74.07
24.13
7
A
PRO
134
-82.31
32.47
7
A
LEU
173
68.31
164.42
7
A
HIS
175
70.72
-44.02
8
A
ALA
63
-140.17
-58.84
8
A
SER
64
-163.70
98.35
8
A
GLU
79
-103.49
53.79
8
A
PRO
134
-82.91
32.92
8
A
LYS
170
67.33
134.96
8
A
HIS
175
53.74
80.44
9
A
ALA
63
-169.29
-35.83
9
A
GLU
79
-104.85
53.15
9
A
ASP
94
-79.16
-169.44
9
A
LYS
170
-68.88
1.40
9
A
HIS
179
-179.54
-39.11
10
A
LYS
67
-79.80
-152.55
10
A
PRO
120
-73.53
21.12
10
A
PRO
134
-76.83
39.29
10
A
SER
163
-102.95
-152.72
10
A
ASN
166
-103.34
-79.54
10
A
VAL
171
53.56
-79.74
10
A
HIS
179
-100.90
-162.49
11
A
ALA
63
-105.89
77.70
11
A
GLU
79
-109.63
54.25
11
A
SER
85
-94.05
30.65
11
A
PRO
134
-78.32
39.41
11
A
LYS
170
64.09
-165.49
11
A
THR
172
63.17
-47.88
11
A
HIS
178
-146.58
-60.39
12
A
LYS
67
-128.39
-72.59
12
A
GLU
79
-94.56
56.09
12
A
SER
85
-98.60
34.21
12
A
PRO
134
-82.72
37.92
12
A
HIS
178
-154.85
23.33
13
A
GLU
79
-101.62
53.07
13
A
SER
85
-95.50
32.79
13
A
PRO
120
-79.27
32.56
13
A
LYS
162
-76.01
-82.10
13
A
HIS
175
-121.88
-71.66
14
A
GLU
79
-102.09
53.57
14
A
VAL
157
-158.43
86.87
14
A
LYS
170
73.69
-71.85
14
A
VAL
171
58.68
76.75
14
A
HIS
179
-161.79
-49.53
15
A
ALA
63
-65.34
99.97
15
A
LYS
67
-104.68
-86.77
15
A
GLU
79
-107.26
52.77
15
A
PRO
134
-88.80
32.37
15
A
VAL
157
-155.84
70.96
15
A
ASN
166
-131.63
-68.33
15
A
LYS
170
69.02
88.04
15
A
THR
172
-178.59
-44.00
15
A
GLU
174
54.51
100.51
15
A
HIS
178
71.35
116.09
16
A
GLU
79
-97.85
55.48
16
A
SER
85
-89.58
36.38
16
A
ASP
94
-78.92
-167.19
16
A
PRO
134
-77.84
45.41
16
A
THR
154
-130.88
-36.11
16
A
LYS
170
-167.16
109.06
17
A
SER
64
71.37
149.33
17
A
GLU
79
-90.34
53.91
17
A
PRO
134
-88.90
37.74
17
A
THR
154
-138.01
-31.27
17
A
SER
163
71.13
112.53
17
A
LYS
170
77.51
-61.81
17
A
HIS
175
71.27
159.69
17
A
HIS
177
-69.79
97.29
18
A
LYS
67
-88.06
-70.13
18
A
GLU
79
-95.14
50.89
18
A
SER
85
-95.30
34.74
18
A
PRO
134
-79.65
31.52
18
A
LYS
156
-91.47
-70.58
18
A
VAL
157
41.40
83.27
18
A
LYS
162
-64.26
-71.54
18
A
SER
163
178.35
151.85
18
A
LYS
170
65.81
-83.53
19
A
GLU
79
-97.95
47.89
19
A
PRO
120
-68.84
14.28
19
A
LYS
170
-176.16
140.51
19
A
HIS
178
70.43
109.06
20
A
SER
64
-95.03
31.47
20
A
GLU
79
-99.43
52.97
20
A
SER
85
-93.69
35.72
20
A
ASP
97
61.51
62.94
20
A
PRO
120
-74.84
29.75
20
A
LYS
156
-78.95
-74.94
20
A
LYS
170
-92.38
36.80
20
A
GLU
174
-99.46
32.94
Structure of N-terminal domain of a plant Grx
1
N
N
A
SER
68
A
SER
7
HELX_P
A
THR
72
A
THR
11
5
1
5
A
GLU
79
A
GLU
18
HELX_P
A
ILE
83
A
ILE
22
5
2
5
A
ASN
107
A
ASN
46
HELX_P
A
VAL
119
A
VAL
58
1
3
13
A
PRO
120
A
PRO
59
HELX_P
A
CYS
123
A
CYS
62
5
4
4
A
ASP
135
A
ASP
74
HELX_P
A
THR
154
A
THR
93
1
5
20
HYDROLASE
Nuclease, Glutaredoxin, HYDROLASE
GRS16_ARATH
UNP
1
63
Q8H7F6
ASAVKSLTETELLPITEADSIPSASGVYAVYDKSDELQFVGISRNIAASVSAHLKSVPELCGSVKVGIVEEPDKAVLTQA
WKLWIEEHIKVTGKVPPGNKSGNNTFVK
63
170
2LWF
63
170
Q8H7F6
A
1
2
109
1
initiating methionine
MET
62
2LWF
A
Q8H7F6
UNP
1
1
expression tag
VAL
171
2LWF
A
Q8H7F6
UNP
110
1
expression tag
THR
172
2LWF
A
Q8H7F6
UNP
111
1
expression tag
LEU
173
2LWF
A
Q8H7F6
UNP
112
1
expression tag
GLU
174
2LWF
A
Q8H7F6
UNP
113
1
expression tag
HIS
175
2LWF
A
Q8H7F6
UNP
114
1
expression tag
HIS
176
2LWF
A
Q8H7F6
UNP
115
1
expression tag
HIS
177
2LWF
A
Q8H7F6
UNP
116
1
expression tag
HIS
178
2LWF
A
Q8H7F6
UNP
117
1
expression tag
HIS
179
2LWF
A
Q8H7F6
UNP
118
1
expression tag
HIS
180
2LWF
A
Q8H7F6
UNP
119
4
anti-parallel
anti-parallel
anti-parallel
A
GLU
73
A
GLU
12
A
PRO
76
A
PRO
15
A
SER
125
A
SER
64
A
ILE
130
A
ILE
69
A
GLY
88
A
GLY
27
A
TYR
93
A
TYR
32
A
LEU
99
A
LEU
38
A
SER
105
A
SER
44