1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Rettig, M.
Germann, M.W.
Wilson, W.
Wang, S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C18 H26 N10 O3
430.464
NETROPSIN
non-polymer
GE
Chembiochem
1439-4227
14
323
331
10.1002/cbic.201200706
23355266
Molecular basis for sequence-dependent induced DNA bending.
2013
3044.017
DNA (5'-D(*GP*GP*AP*TP*AP*TP*AP*TP*CP*C)-3')
2
syn
polymer
430.464
NETROPSIN
1
syn
non-polymer
no
no
(DG)(DG)(DA)(DT)(DA)(DT)(DA)(DT)(DC)(DC)
GGATATATCC
1,2
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
5.780
1
19
1
1
2
20
-1.466
1_DG1:DC20_2
1
-18.184
0.032
0.111
-0.045
7.724
1
19
1
2
2
19
-1.454
1_DG2:DC19_2
2
-19.494
-0.141
0.032
-0.076
-5.498
1
20
1
3
2
18
-5.110
1_DA3:DT18_2
3
-14.581
0.192
-0.037
0.045
5.801
1
20
1
4
2
17
-1.213
1_DT4:DA17_2
4
-11.445
-0.365
-0.030
0.089
1.768
1
20
1
5
2
16
-6.286
1_DA5:DT16_2
5
-19.334
0.292
0.229
0.046
-0.017
1
20
1
6
2
15
0.338
1_DT6:DA15_2
6
-15.195
-0.304
0.112
-0.015
-1.329
1
20
1
7
2
14
-2.772
1_DA7:DT14_2
7
-13.147
0.520
0.059
0.073
3.846
1
20
1
8
2
13
0.296
1_DT8:DA13_2
8
-17.907
-0.045
0.117
-0.044
-7.682
1
19
1
9
2
12
-0.826
1_DC9:DG12_2
9
-12.799
0.548
-0.027
-0.203
5.346
1
19
1
10
2
11
-0.483
1_DC10:DG11_2
10
-2.292
0.183
0.185
-0.122
2.970
34.485
1
1
1
2
16.347
2
2
20
19
3.173
9.566
-0.059
-0.310
11_DG1DG2:DC19DC20_22
1
-1.911
3.266
33.116
-1.947
-0.184
3.376
41.682
1
1
2
3
-0.273
2
2
19
18
3.375
-0.194
0.071
-0.170
11_DG2DA3:DT18DC19_22
2
-0.053
0.074
41.682
-0.218
-0.106
2.835
26.549
1
1
3
4
2.945
2
2
18
17
2.849
1.352
0.222
-0.283
11_DA3DT4:DA17DT18_22
3
0.481
-1.047
26.511
-0.927
-0.373
3.204
42.334
1
1
4
5
-8.966
2
2
17
16
3.296
-6.448
-0.425
0.526
11_DT4DA5:DT16DA17_22
4
-2.615
3.636
41.784
1.387
0.321
3.261
35.397
1
1
5
6
-14.127
2
2
16
15
3.166
-8.505
0.331
-0.720
11_DA5DT6:DA15DT16_22
5
2.244
-3.728
34.321
0.065
-0.214
3.258
41.924
1
1
6
7
-4.321
2
2
15
14
3.292
-3.089
-0.015
0.350
11_DT6DA7:DT14DA15_22
6
1.128
-1.578
41.801
0.811
0.139
3.152
28.668
1
1
7
8
-9.417
2
2
14
13
3.074
-4.643
0.061
-0.744
11_DA7DT8:DA13DT14_22
7
-0.341
0.692
28.295
-0.499
-0.196
3.369
42.272
1
1
8
9
4.592
2
2
13
12
3.394
3.308
-0.005
-0.187
11_DT8DC9:DG12DA13_22
8
1.072
-1.488
42.135
-0.610
0.121
2.929
32.185
1
1
9
10
14.611
2
2
12
11
3.125
8.013
0.366
-0.304
11_DC9DC10:DG11DG12_22
9
-2.074
3.781
31.129
-1.895
-1.008
atom_site
pdbx_unobs_or_zero_occ_atoms
repository
Initial release
Database references
Advisory
Atomic model
1
0
2013-01-23
1
1
2013-02-20
2
0
2017-07-26
The free DNA without netropsin.
BMRB
Y
RCSB
2012-07-31
REL
REL
REL
NT
NETROPSIN
target function
9500
11
2D 1H-1H NOESY
2D 1H-1H NOESY
2D DQF-COSY
2D 1H-1H NOESY
2D 1H-13C HSQC aliphatic
2D 1H-13C HSQC aromatic
0.9
mM
0.9
mM
0.9
mM
0.9
mM
0.6
mM
9
mg/mL
0.6
mM
7
ambient
278
K
simulated annealing, molecular dynamics
1
minimized average structure
0.9 mM DNA (5'-D(*GP*GP*AP*TP*AP*TP*AP*TP*CP*C)-3'), 0.9 mM NETROPSIN, 100% D2O
100% D2O
0.9 mM DNA (5'-D(*GP*GP*AP*TP*AP*TP*AP*TP*CP*C)-3'), 0.9 mM NETROPSIN, 90% H2O/10% D2O
90% H2O/10% D2O
0.6 mM DNA (5'-D(*GP*GP*AP*TP*AP*TP*AP*TP*CP*C)-3'), 9 mg/mL Pf1 phage, 0.6 mM NETROPSIN, 100% D2O
100% D2O
Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, and Kollman
structure solution
AMBER
9
Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, and Kollman
refinement
AMBER
9
600
Bruker
Avance
Bruker Avance
500
Bruker
Avance
Bruker Avance
NT
21
2
NT
NT
101
1
DG
1
n
1
DG
1
1
DG
2
n
2
DG
2
1
DA
3
n
3
DA
3
1
DT
4
n
4
DT
4
1
DA
5
n
5
DA
5
1
DT
6
n
6
DT
6
1
DA
7
n
7
DA
7
1
DT
8
n
8
DT
8
1
DC
9
n
9
DC
9
1
DC
10
n
10
DC
10
1
DG
11
n
1
DG
11
2
DG
12
n
2
DG
12
2
DA
13
n
3
DA
13
2
DT
14
n
4
DT
14
2
DA
15
n
5
DA
15
2
DT
16
n
6
DT
16
2
DA
17
n
7
DA
17
2
DT
18
n
8
DT
18
2
DC
19
n
9
DC
19
2
DC
20
n
10
DC
20
2
author_and_software_defined_assembly
PISA
2
dimeric
418.7
-6.8
2391
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
1
DA
3
0.068
SIDE CHAIN
1
1
DT
6
0.070
SIDE CHAIN
1
1
DT
8
0.060
SIDE CHAIN
1
2
DT
16
0.073
SIDE CHAIN
1
2
DA
17
0.087
SIDE CHAIN
2
1
DA
5
0.057
SIDE CHAIN
2
1
DT
8
0.078
SIDE CHAIN
2
2
DG
11
0.054
SIDE CHAIN
2
2
DT
16
0.074
SIDE CHAIN
2
2
DA
17
0.062
SIDE CHAIN
3
1
DG
1
0.075
SIDE CHAIN
3
1
DA
3
0.074
SIDE CHAIN
3
1
DT
6
0.083
SIDE CHAIN
3
1
DT
8
0.072
SIDE CHAIN
3
2
DA
13
0.063
SIDE CHAIN
3
2
DT
14
0.077
SIDE CHAIN
3
2
DA
17
0.079
SIDE CHAIN
4
1
DT
6
0.077
SIDE CHAIN
4
1
DT
8
0.079
SIDE CHAIN
4
2
DG
12
0.057
SIDE CHAIN
5
1
DG
1
0.067
SIDE CHAIN
5
1
DA
3
0.059
SIDE CHAIN
5
1
DT
6
0.088
SIDE CHAIN
5
2
DA
13
0.068
SIDE CHAIN
5
2
DT
14
0.088
SIDE CHAIN
5
2
DA
17
0.077
SIDE CHAIN
6
1
DA
5
0.072
SIDE CHAIN
6
1
DT
6
0.109
SIDE CHAIN
6
1
DT
8
0.074
SIDE CHAIN
6
2
DG
12
0.070
SIDE CHAIN
6
2
DA
13
0.062
SIDE CHAIN
7
1
DA
5
0.080
SIDE CHAIN
7
1
DT
6
0.106
SIDE CHAIN
7
1
DT
8
0.072
SIDE CHAIN
7
2
DG
11
0.074
SIDE CHAIN
7
2
DT
14
0.080
SIDE CHAIN
7
2
DT
16
0.065
SIDE CHAIN
8
1
DT
6
0.102
SIDE CHAIN
8
1
DT
8
0.066
SIDE CHAIN
8
2
DT
16
0.097
SIDE CHAIN
8
2
DA
17
0.073
SIDE CHAIN
9
1
DA
5
0.073
SIDE CHAIN
9
1
DT
6
0.068
SIDE CHAIN
9
2
DT
16
0.068
SIDE CHAIN
9
2
DA
17
0.067
SIDE CHAIN
10
1
DT
6
0.088
SIDE CHAIN
10
1
DT
8
0.096
SIDE CHAIN
10
2
DG
11
0.112
SIDE CHAIN
10
2
DG
12
0.071
SIDE CHAIN
10
2
DT
14
0.060
SIDE CHAIN
10
2
DT
16
0.063
SIDE CHAIN
10
2
DA
17
0.077
SIDE CHAIN
11
1
DG
1
0.084
SIDE CHAIN
11
1
DG
2
0.071
SIDE CHAIN
11
1
DT
6
0.066
SIDE CHAIN
11
1
DT
8
0.074
SIDE CHAIN
11
2
DG
11
0.056
SIDE CHAIN
11
2
DG
12
0.102
SIDE CHAIN
11
2
DT
14
0.067
SIDE CHAIN
11
2
DT
16
0.070
SIDE CHAIN
11
2
DA
17
0.073
SIDE CHAIN
1
-3.38
0.50
117.00
113.62
1
1
1
C4
C5
C6
DA
DA
DA
3
3
3
N
1
3.81
0.50
117.70
121.51
1
1
1
C5
C6
N1
DA
DA
DA
3
3
3
N
1
-4.21
0.60
118.60
114.39
1
1
1
N1
C6
N6
DA
DA
DA
3
3
3
N
1
3.20
0.30
108.30
111.50
1
1
1
O4'
C1'
N1
DT
DT
DT
4
4
4
N
1
-3.99
0.60
122.90
118.91
1
1
1
C6
C5
C7
DT
DT
DT
4
4
4
N
1
-3.13
0.50
117.00
113.87
1
1
1
C4
C5
C6
DA
DA
DA
5
5
5
N
1
3.58
0.50
117.70
121.28
1
1
1
C5
C6
N1
DA
DA
DA
5
5
5
N
1
-5.24
0.60
118.60
113.36
1
1
1
N1
C6
N6
DA
DA
DA
5
5
5
N
1
3.29
0.30
108.30
111.59
1
1
1
O4'
C1'
N1
DT
DT
DT
6
6
6
N
1
3.21
0.50
117.70
120.91
1
1
1
C5
C6
N1
DA
DA
DA
7
7
7
N
1
-4.99
0.60
118.60
113.61
1
1
1
N1
C6
N6
DA
DA
DA
7
7
7
N
1
2.51
0.30
108.30
110.81
1
1
1
O4'
C1'
N1
DT
DT
DT
8
8
8
N
1
-5.23
0.70
121.90
116.67
1
1
1
N3
C2
O2
DC
DC
DC
10
10
10
N
1
-3.45
0.50
117.00
113.55
2
2
2
C4
C5
C6
DA
DA
DA
13
13
13
N
1
3.51
0.50
117.70
121.21
2
2
2
C5
C6
N1
DA
DA
DA
13
13
13
N
1
-5.84
0.60
118.60
112.76
2
2
2
N1
C6
N6
DA
DA
DA
13
13
13
N
1
2.15
0.30
108.30
110.45
2
2
2
O4'
C1'
N1
DT
DT
DT
14
14
14
N
1
-3.33
0.50
117.00
113.67
2
2
2
C4
C5
C6
DA
DA
DA
15
15
15
N
1
3.30
0.50
117.70
121.00
2
2
2
C5
C6
N1
DA
DA
DA
15
15
15
N
1
-5.83
0.60
118.60
112.77
2
2
2
N1
C6
N6
DA
DA
DA
15
15
15
N
1
-3.61
0.60
122.90
119.29
2
2
2
C6
C5
C7
DT
DT
DT
16
16
16
N
1
-3.79
0.50
117.00
113.21
2
2
2
C4
C5
C6
DA
DA
DA
17
17
17
N
1
3.61
0.50
117.70
121.31
2
2
2
C5
C6
N1
DA
DA
DA
17
17
17
N
1
-5.60
0.60
118.60
113.00
2
2
2
N1
C6
N6
DA
DA
DA
17
17
17
N
1
-3.71
0.60
122.90
119.19
2
2
2
C6
C5
C7
DT
DT
DT
18
18
18
N
1
-4.76
0.70
121.90
117.14
2
2
2
N3
C2
O2
DC
DC
DC
19
19
19
N
1
-4.23
0.70
121.90
117.67
2
2
2
N3
C2
O2
DC
DC
DC
20
20
20
N
2
-3.13
0.50
117.00
113.87
1
1
1
C4
C5
C6
DA
DA
DA
3
3
3
N
2
3.41
0.50
117.70
121.11
1
1
1
C5
C6
N1
DA
DA
DA
3
3
3
N
2
-4.56
0.60
118.60
114.04
1
1
1
N1
C6
N6
DA
DA
DA
3
3
3
N
2
-4.05
0.60
122.90
118.85
1
1
1
C6
C5
C7
DT
DT
DT
4
4
4
N
2
3.03
0.50
117.70
120.73
1
1
1
C5
C6
N1
DA
DA
DA
5
5
5
N
2
-4.95
0.60
118.60
113.65
1
1
1
N1
C6
N6
DA
DA
DA
5
5
5
N
2
4.89
0.30
108.30
113.19
1
1
1
O4'
C1'
N1
DT
DT
DT
6
6
6
N
2
3.25
0.50
117.70
120.95
1
1
1
C5
C6
N1
DA
DA
DA
7
7
7
N
2
-5.43
0.60
118.60
113.17
1
1
1
N1
C6
N6
DA
DA
DA
7
7
7
N
2
2.15
0.30
108.30
110.45
1
1
1
O4'
C1'
N1
DT
DT
DT
8
8
8
N
2
3.66
0.60
106.00
109.66
1
1
1
O4'
C4'
C3'
DC
DC
DC
9
9
9
N
2
-4.26
0.70
121.90
117.64
1
1
1
N3
C2
O2
DC
DC
DC
9
9
9
N
2
-4.69
0.70
121.90
117.21
1
1
1
N3
C2
O2
DC
DC
DC
10
10
10
N
2
-3.27
0.50
117.00
113.73
2
2
2
C4
C5
C6
DA
DA
DA
13
13
13
N
2
3.15
0.50
117.70
120.85
2
2
2
C5
C6
N1
DA
DA
DA
13
13
13
N
2
-5.45
0.60
118.60
113.15
2
2
2
N1
C6
N6
DA
DA
DA
13
13
13
N
2
1.89
0.30
108.30
110.19
2
2
2
O4'
C1'
N1
DT
DT
DT
14
14
14
N
2
-3.19
0.50
117.00
113.81
2
2
2
C4
C5
C6
DA
DA
DA
15
15
15
N
2
3.72
0.50
117.70
121.42
2
2
2
C5
C6
N1
DA
DA
DA
15
15
15
N
2
-5.96
0.60
118.60
112.64
2
2
2
N1
C6
N6
DA
DA
DA
15
15
15
N
2
2.10
0.30
108.30
110.40
2
2
2
O4'
C1'
N1
DT
DT
DT
16
16
16
N
2
-3.70
0.50
117.00
113.30
2
2
2
C4
C5
C6
DA
DA
DA
17
17
17
N
2
3.73
0.50
117.70
121.43
2
2
2
C5
C6
N1
DA
DA
DA
17
17
17
N
2
-6.08
0.60
118.60
112.52
2
2
2
N1
C6
N6
DA
DA
DA
17
17
17
N
2
2.81
0.30
108.30
111.11
2
2
2
O4'
C1'
N1
DT
DT
DT
18
18
18
N
2
-3.66
0.60
122.90
119.24
2
2
2
C6
C5
C7
DT
DT
DT
18
18
18
N
3
3.83
0.60
106.00
109.83
1
1
1
O4'
C4'
C3'
DG
DG
DG
2
2
2
N
3
-3.54
0.50
117.00
113.46
1
1
1
C4
C5
C6
DA
DA
DA
3
3
3
N
3
3.59
0.50
117.70
121.29
1
1
1
C5
C6
N1
DA
DA
DA
3
3
3
N
3
-4.97
0.60
118.60
113.63
1
1
1
N1
C6
N6
DA
DA
DA
3
3
3
N
3
3.38
0.30
108.30
111.68
1
1
1
O4'
C1'
N1
DT
DT
DT
4
4
4
N
3
-4.02
0.60
122.90
118.88
1
1
1
C6
C5
C7
DT
DT
DT
4
4
4
N
3
3.59
0.50
117.70
121.29
1
1
1
C5
C6
N1
DA
DA
DA
5
5
5
N
3
-5.26
0.60
118.60
113.34
1
1
1
N1
C6
N6
DA
DA
DA
5
5
5
N
3
2.29
0.30
108.30
110.59
1
1
1
O4'
C1'
N1
DT
DT
DT
6
6
6
N
3
3.22
0.50
117.70
120.92
1
1
1
C5
C6
N1
DA
DA
DA
7
7
7
N
3
-4.95
0.60
118.60
113.65
1
1
1
N1
C6
N6
DA
DA
DA
7
7
7
N
3
3.31
0.30
108.30
111.61
1
1
1
O4'
C1'
N1
DT
DT
DT
8
8
8
N
3
-4.26
0.60
122.90
118.64
1
1
1
C6
C5
C7
DT
DT
DT
8
8
8
N
3
1.90
0.30
108.30
110.20
1
1
1
O4'
C1'
N1
DC
DC
DC
10
10
10
N
3
-4.80
0.70
121.90
117.10
1
1
1
N3
C2
O2
DC
DC
DC
10
10
10
N
3
-3.56
0.50
117.00
113.44
2
2
2
C4
C5
C6
DA
DA
DA
13
13
13
N
3
3.51
0.50
117.70
121.21
2
2
2
C5
C6
N1
DA
DA
DA
13
13
13
N
3
-6.36
0.60
118.60
112.24
2
2
2
N1
C6
N6
DA
DA
DA
13
13
13
N
3
2.70
0.30
108.30
111.00
2
2
2
O4'
C1'
N1
DT
DT
DT
14
14
14
N
3
-4.42
0.60
122.90
118.48
2
2
2
C6
C5
C7
DT
DT
DT
14
14
14
N
3
-3.14
0.50
117.00
113.86
2
2
2
C4
C5
C6
DA
DA
DA
15
15
15
N
3
3.51
0.50
117.70
121.21
2
2
2
C5
C6
N1
DA
DA
DA
15
15
15
N
3
-5.65
0.60
118.60
112.95
2
2
2
N1
C6
N6
DA
DA
DA
15
15
15
N
3
3.35
0.30
108.30
111.65
2
2
2
O4'
C1'
N1
DT
DT
DT
16
16
16
N
3
-3.90
0.60
122.90
119.00
2
2
2
C6
C5
C7
DT
DT
DT
16
16
16
N
3
-3.71
0.50
117.00
113.29
2
2
2
C4
C5
C6
DA
DA
DA
17
17
17
N
3
3.39
0.50
117.70
121.09
2
2
2
C5
C6
N1
DA
DA
DA
17
17
17
N
3
-5.96
0.60
118.60
112.64
2
2
2
N1
C6
N6
DA
DA
DA
17
17
17
N
3
3.23
0.30
108.30
111.53
2
2
2
O4'
C1'
N1
DT
DT
DT
18
18
18
N
3
-3.71
0.60
122.30
118.59
2
2
2
N3
C2
O2
DT
DT
DT
18
18
18
N
3
-4.28
0.70
121.90
117.62
2
2
2
N3
C2
O2
DC
DC
DC
19
19
19
N
3
2.25
0.30
108.30
110.55
2
2
2
O4'
C1'
N1
DC
DC
DC
20
20
20
N
4
2.25
0.30
108.30
110.55
1
1
1
O4'
C1'
N9
DG
DG
DG
1
1
1
N
4
-3.07
0.50
117.00
113.93
1
1
1
C4
C5
C6
DA
DA
DA
3
3
3
N
4
3.62
0.50
117.70
121.32
1
1
1
C5
C6
N1
DA
DA
DA
3
3
3
N
4
-4.29
0.60
118.60
114.31
1
1
1
N1
C6
N6
DA
DA
DA
3
3
3
N
4
-3.92
0.60
122.90
118.98
1
1
1
C6
C5
C7
DT
DT
DT
4
4
4
N
4
3.25
0.50
117.70
120.95
1
1
1
C5
C6
N1
DA
DA
DA
5
5
5
N
4
-4.34
0.60
118.60
114.26
1
1
1
N1
C6
N6
DA
DA
DA
5
5
5
N
4
2.81
0.30
108.30
111.11
1
1
1
O4'
C1'
N1
DT
DT
DT
6
6
6
N
4
-3.63
0.60
122.90
119.27
1
1
1
C6
C5
C7
DT
DT
DT
6
6
6
N
4
3.61
0.50
117.70
121.31
1
1
1
C5
C6
N1
DA
DA
DA
7
7
7
N
4
-5.57
0.60
118.60
113.03
1
1
1
N1
C6
N6
DA
DA
DA
7
7
7
N
4
3.42
0.30
108.30
111.72
1
1
1
O4'
C1'
N1
DT
DT
DT
8
8
8
N
4
4.09
0.60
106.00
110.09
1
1
1
O4'
C4'
C3'
DC
DC
DC
9
9
9
N
4
-4.26
0.70
121.90
117.64
1
1
1
N3
C2
O2
DC
DC
DC
10
10
10
N
4
1.92
0.30
108.30
110.22
2
2
2
O4'
C1'
N9
DG
DG
DG
11
11
11
N
4
-3.45
0.50
117.00
113.55
2
2
2
C4
C5
C6
DA
DA
DA
13
13
13
N
4
3.56
0.50
117.70
121.26
2
2
2
C5
C6
N1
DA
DA
DA
13
13
13
N
4
-5.51
0.60
118.60
113.09
2
2
2
N1
C6
N6
DA
DA
DA
13
13
13
N
4
1.92
0.30
108.30
110.22
2
2
2
O4'
C1'
N1
DT
DT
DT
14
14
14
N
4
-3.71
0.50
117.00
113.29
2
2
2
C4
C5
C6
DA
DA
DA
15
15
15
N
4
3.55
0.50
117.70
121.25
2
2
2
C5
C6
N1
DA
DA
DA
15
15
15
N
4
-6.90
0.60
118.60
111.70
2
2
2
N1
C6
N6
DA
DA
DA
15
15
15
N
4
1.83
0.30
108.30
110.13
2
2
2
O4'
C1'
N1
DT
DT
DT
16
16
16
N
4
-3.90
0.60
122.90
119.00
2
2
2
C6
C5
C7
DT
DT
DT
16
16
16
N
4
-3.34
0.50
117.00
113.66
2
2
2
C4
C5
C6
DA
DA
DA
17
17
17
N
4
3.58
0.50
117.70
121.28
2
2
2
C5
C6
N1
DA
DA
DA
17
17
17
N
4
-5.85
0.60
118.60
112.75
2
2
2
N1
C6
N6
DA
DA
DA
17
17
17
N
4
3.18
0.30
108.30
111.48
2
2
2
O4'
C1'
N1
DT
DT
DT
18
18
18
N
4
2.10
0.30
108.30
110.40
2
2
2
O4'
C1'
N1
DC
DC
DC
20
20
20
N
4
-5.21
0.70
121.90
116.69
2
2
2
N3
C2
O2
DC
DC
DC
20
20
20
N
5
3.63
0.60
106.00
109.63
1
1
1
O4'
C4'
C3'
DG
DG
DG
2
2
2
N
5
-3.67
0.50
117.00
113.33
1
1
1
C4
C5
C6
DA
DA
DA
3
3
3
N
5
3.80
0.50
117.70
121.50
1
1
1
C5
C6
N1
DA
DA
DA
3
3
3
N
5
-5.34
0.60
118.60
113.26
1
1
1
N1
C6
N6
DA
DA
DA
3
3
3
N
5
-3.68
0.60
122.90
119.22
1
1
1
C6
C5
C7
DT
DT
DT
4
4
4
N
5
3.03
0.50
117.70
120.73
1
1
1
C5
C6
N1
DA
DA
DA
5
5
5
N
5
-4.49
0.60
118.60
114.11
1
1
1
N1
C6
N6
DA
DA
DA
5
5
5
N
5
2.11
0.30
108.30
110.41
1
1
1
O4'
C1'
N1
DT
DT
DT
6
6
6
N
5
3.39
0.50
117.70
121.09
1
1
1
C5
C6
N1
DA
DA
DA
7
7
7
N
5
-5.80
0.60
118.60
112.80
1
1
1
N1
C6
N6
DA
DA
DA
7
7
7
N
5
3.67
0.30
108.30
111.97
1
1
1
O4'
C1'
N1
DT
DT
DT
8
8
8
N
5
2.36
0.30
108.30
110.66
1
1
1
O4'
C1'
N1
DC
DC
DC
10
10
10
N
5
-4.93
0.70
121.90
116.97
1
1
1
N3
C2
O2
DC
DC
DC
10
10
10
N
5
3.83
0.60
106.00
109.83
2
2
2
O4'
C4'
C3'
DG
DG
DG
12
12
12
N
5
-3.04
0.50
117.00
113.96
2
2
2
C4
C5
C6
DA
DA
DA
13
13
13
N
5
3.37
0.50
117.70
121.07
2
2
2
C5
C6
N1
DA
DA
DA
13
13
13
N
5
-5.01
0.60
118.60
113.59
2
2
2
N1
C6
N6
DA
DA
DA
13
13
13
N
5
-3.95
0.60
122.90
118.95
2
2
2
C6
C5
C7
DT
DT
DT
14
14
14
N
5
-3.42
0.50
117.00
113.58
2
2
2
C4
C5
C6
DA
DA
DA
15
15
15
N
5
3.57
0.50
117.70
121.27
2
2
2
C5
C6
N1
DA
DA
DA
15
15
15
N
5
-6.83
0.60
118.60
111.77
2
2
2
N1
C6
N6
DA
DA
DA
15
15
15
N
5
4.77
0.30
108.30
113.07
2
2
2
O4'
C1'
N1
DT
DT
DT
16
16
16
N
5
-3.67
0.50
117.00
113.33
2
2
2
C4
C5
C6
DA
DA
DA
17
17
17
N
5
3.78
0.50
117.70
121.48
2
2
2
C5
C6
N1
DA
DA
DA
17
17
17
N
5
-5.40
0.60
118.60
113.20
2
2
2
N1
C6
N6
DA
DA
DA
17
17
17
N
5
-4.11
0.60
122.90
118.79
2
2
2
C6
C5
C7
DT
DT
DT
18
18
18
N
5
-4.73
0.70
121.90
117.17
2
2
2
N3
C2
O2
DC
DC
DC
20
20
20
N
6
1.93
0.30
108.30
110.23
1
1
1
O4'
C1'
N9
DG
DG
DG
1
1
1
N
6
2.30
0.30
108.30
110.60
1
1
1
O4'
C1'
N9
DG
DG
DG
2
2
2
N
6
-3.07
0.50
117.00
113.93
1
1
1
C4
C5
C6
DA
DA
DA
3
3
3
N
6
3.41
0.50
117.70
121.11
1
1
1
C5
C6
N1
DA
DA
DA
3
3
3
N
6
2.74
0.30
108.30
111.04
1
1
1
O4'
C1'
N1
DT
DT
DT
4
4
4
N
6
3.32
0.50
117.70
121.02
1
1
1
C5
C6
N1
DA
DA
DA
5
5
5
N
6
-5.41
0.60
118.60
113.19
1
1
1
N1
C6
N6
DA
DA
DA
5
5
5
N
6
2.72
0.30
108.30
111.02
1
1
1
O4'
C1'
N1
DT
DT
DT
6
6
6
N
6
-3.64
0.60
122.90
119.26
1
1
1
C6
C5
C7
DT
DT
DT
6
6
6
N
6
-3.22
0.50
117.00
113.78
1
1
1
C4
C5
C6
DA
DA
DA
7
7
7
N
6
3.64
0.50
117.70
121.34
1
1
1
C5
C6
N1
DA
DA
DA
7
7
7
N
6
-6.16
0.60
118.60
112.44
1
1
1
N1
C6
N6
DA
DA
DA
7
7
7
N
6
4.75
0.30
108.30
113.05
1
1
1
O4'
C1'
N1
DT
DT
DT
8
8
8
N
6
4.13
0.60
106.00
110.13
1
1
1
O4'
C4'
C3'
DC
DC
DC
9
9
9
N
6
-4.21
0.70
121.90
117.69
1
1
1
N3
C2
O2
DC
DC
DC
10
10
10
N
6
2.29
0.30
108.30
110.59
2
2
2
O4'
C1'
N9
DG
DG
DG
11
11
11
N
6
-3.79
0.50
117.00
113.21
2
2
2
C4
C5
C6
DA
DA
DA
13
13
13
N
6
3.58
0.50
117.70
121.28
2
2
2
C5
C6
N1
DA
DA
DA
13
13
13
N
6
-5.74
0.60
118.60
112.86
2
2
2
N1
C6
N6
DA
DA
DA
13
13
13
N
6
-3.71
0.60
122.90
119.19
2
2
2
C6
C5
C7
DT
DT
DT
14
14
14
N
6
3.93
0.60
106.00
109.93
2
2
2
O4'
C4'
C3'
DA
DA
DA
15
15
15
N
6
-3.31
0.50
117.00
113.69
2
2
2
C4
C5
C6
DA
DA
DA
15
15
15
N
6
3.25
0.50
117.70
120.95
2
2
2
C5
C6
N1
DA
DA
DA
15
15
15
N
6
-5.32
0.60
118.60
113.28
2
2
2
N1
C6
N6
DA
DA
DA
15
15
15
N
6
3.01
0.30
108.30
111.31
2
2
2
O4'
C1'
N1
DT
DT
DT
16
16
16
N
6
-3.85
0.60
122.90
119.05
2
2
2
C6
C5
C7
DT
DT
DT
16
16
16
N
6
-3.40
0.50
117.00
113.60
2
2
2
C4
C5
C6
DA
DA
DA
17
17
17
N
6
3.89
0.50
117.70
121.59
2
2
2
C5
C6
N1
DA
DA
DA
17
17
17
N
6
-5.50
0.60
118.60
113.10
2
2
2
N1
C6
N6
DA
DA
DA
17
17
17
N
6
3.82
0.30
108.30
112.12
2
2
2
O4'
C1'
N1
DT
DT
DT
18
18
18
N
6
-4.40
0.70
121.90
117.50
2
2
2
N3
C2
O2
DC
DC
DC
20
20
20
N
7
2.51
0.30
108.30
110.81
1
1
1
O4'
C1'
N9
DG
DG
DG
1
1
1
N
7
-3.46
0.50
117.00
113.54
1
1
1
C4
C5
C6
DA
DA
DA
3
3
3
N
7
3.70
0.50
117.70
121.40
1
1
1
C5
C6
N1
DA
DA
DA
3
3
3
N
7
-5.13
0.60
118.60
113.47
1
1
1
N1
C6
N6
DA
DA
DA
3
3
3
N
7
2.45
0.30
108.30
110.75
1
1
1
O4'
C1'
N1
DT
DT
DT
4
4
4
N
7
-4.30
0.60
122.90
118.60
1
1
1
C6
C5
C7
DT
DT
DT
4
4
4
N
7
3.34
0.50
117.70
121.04
1
1
1
C5
C6
N1
DA
DA
DA
5
5
5
N
7
-4.48
0.60
118.60
114.12
1
1
1
N1
C6
N6
DA
DA
DA
5
5
5
N
7
1.91
0.30
108.30
110.21
1
1
1
O4'
C1'
N1
DT
DT
DT
6
6
6
N
7
-3.64
0.60
122.90
119.26
1
1
1
C6
C5
C7
DT
DT
DT
6
6
6
N
7
-3.41
0.50
117.00
113.59
1
1
1
C4
C5
C6
DA
DA
DA
7
7
7
N
7
3.57
0.50
117.70
121.27
1
1
1
C5
C6
N1
DA
DA
DA
7
7
7
N
7
-5.22
0.60
118.60
113.38
1
1
1
N1
C6
N6
DA
DA
DA
7
7
7
N
7
3.05
0.30
108.30
111.35
1
1
1
O4'
C1'
N1
DT
DT
DT
8
8
8
N
7
-5.10
0.70
121.90
116.80
1
1
1
N3
C2
O2
DC
DC
DC
10
10
10
N
7
-3.36
0.50
117.00
113.64
2
2
2
C4
C5
C6
DA
DA
DA
13
13
13
N
7
3.50
0.50
117.70
121.20
2
2
2
C5
C6
N1
DA
DA
DA
13
13
13
N
7
-4.93
0.60
118.60
113.67
2
2
2
N1
C6
N6
DA
DA
DA
13
13
13
N
7
2.07
0.30
108.30
110.37
2
2
2
O4'
C1'
N1
DT
DT
DT
14
14
14
N
7
-3.39
0.50
117.00
113.61
2
2
2
C4
C5
C6
DA
DA
DA
15
15
15
N
7
3.41
0.50
117.70
121.11
2
2
2
C5
C6
N1
DA
DA
DA
15
15
15
N
7
-6.01
0.60
118.60
112.59
2
2
2
N1
C6
N6
DA
DA
DA
15
15
15
N
7
-3.66
0.60
122.90
119.24
2
2
2
C6
C5
C7
DT
DT
DT
16
16
16
N
7
1.99
0.30
108.30
110.29
2
2
2
O4'
C1'
N9
DA
DA
DA
17
17
17
N
7
-3.59
0.50
117.00
113.41
2
2
2
C4
C5
C6
DA
DA
DA
17
17
17
N
7
3.62
0.50
117.70
121.32
2
2
2
C5
C6
N1
DA
DA
DA
17
17
17
N
7
-5.52
0.60
118.60
113.08
2
2
2
N1
C6
N6
DA
DA
DA
17
17
17
N
7
2.75
0.30
108.30
111.05
2
2
2
O4'
C1'
N1
DT
DT
DT
18
18
18
N
7
-4.00
0.60
122.90
118.90
2
2
2
C6
C5
C7
DT
DT
DT
18
18
18
N
7
4.20
0.60
118.90
123.10
2
2
2
N1
C2
O2
DC
DC
DC
20
20
20
N
7
-5.78
0.70
121.90
116.12
2
2
2
N3
C2
O2
DC
DC
DC
20
20
20
N
8
3.44
0.50
117.70
121.14
1
1
1
C5
C6
N1
DA
DA
DA
3
3
3
N
8
-4.36
0.60
118.60
114.24
1
1
1
N1
C6
N6
DA
DA
DA
3
3
3
N
8
2.22
0.30
108.30
110.52
1
1
1
O4'
C1'
N1
DT
DT
DT
4
4
4
N
8
-4.12
0.60
122.90
118.78
1
1
1
C6
C5
C7
DT
DT
DT
4
4
4
N
8
3.53
0.50
117.70
121.23
1
1
1
C5
C6
N1
DA
DA
DA
5
5
5
N
8
-4.66
0.60
118.60
113.94
1
1
1
N1
C6
N6
DA
DA
DA
5
5
5
N
8
2.63
0.30
108.30
110.93
1
1
1
O4'
C1'
N1
DT
DT
DT
6
6
6
N
8
-3.67
0.60
122.90
119.23
1
1
1
C6
C5
C7
DT
DT
DT
6
6
6
N
8
-3.23
0.50
117.00
113.77
1
1
1
C4
C5
C6
DA
DA
DA
7
7
7
N
8
3.67
0.50
117.70
121.37
1
1
1
C5
C6
N1
DA
DA
DA
7
7
7
N
8
-5.78
0.60
118.60
112.82
1
1
1
N1
C6
N6
DA
DA
DA
7
7
7
N
8
3.61
0.30
108.30
111.91
1
1
1
O4'
C1'
N1
DT
DT
DT
8
8
8
N
8
-4.65
0.70
121.90
117.25
1
1
1
N3
C2
O2
DC
DC
DC
10
10
10
N
8
1.88
0.30
108.30
110.18
2
2
2
O4'
C1'
N9
DG
DG
DG
11
11
11
N
8
-3.79
0.50
117.00
113.21
2
2
2
C4
C5
C6
DA
DA
DA
13
13
13
N
8
3.70
0.50
117.70
121.40
2
2
2
C5
C6
N1
DA
DA
DA
13
13
13
N
8
-5.92
0.60
118.60
112.68
2
2
2
N1
C6
N6
DA
DA
DA
13
13
13
N
8
3.36
0.30
108.30
111.66
2
2
2
O4'
C1'
N1
DT
DT
DT
14
14
14
N
8
-4.67
0.60
122.90
118.23
2
2
2
C6
C5
C7
DT
DT
DT
14
14
14
N
8
3.44
0.50
117.70
121.14
2
2
2
C5
C6
N1
DA
DA
DA
15
15
15
N
8
-5.29
0.60
118.60
113.31
2
2
2
N1
C6
N6
DA
DA
DA
15
15
15
N
8
3.04
0.30
108.30
111.34
2
2
2
O4'
C1'
N1
DT
DT
DT
16
16
16
N
8
-3.38
0.50
117.00
113.62
2
2
2
C4
C5
C6
DA
DA
DA
17
17
17
N
8
3.79
0.50
117.70
121.49
2
2
2
C5
C6
N1
DA
DA
DA
17
17
17
N
8
-5.05
0.60
118.60
113.55
2
2
2
N1
C6
N6
DA
DA
DA
17
17
17
N
8
-3.63
0.60
122.90
119.27
2
2
2
C6
C5
C7
DT
DT
DT
18
18
18
N
8
-4.49
0.70
121.90
117.41
2
2
2
N3
C2
O2
DC
DC
DC
19
19
19
N
8
-4.40
0.70
121.90
117.50
2
2
2
N3
C2
O2
DC
DC
DC
20
20
20
N
9
-3.43
0.50
117.00
113.57
1
1
1
C4
C5
C6
DA
DA
DA
3
3
3
N
9
3.72
0.50
117.70
121.42
1
1
1
C5
C6
N1
DA
DA
DA
3
3
3
N
9
-5.94
0.60
118.60
112.66
1
1
1
N1
C6
N6
DA
DA
DA
3
3
3
N
9
2.07
0.30
108.30
110.37
1
1
1
O4'
C1'
N1
DT
DT
DT
4
4
4
N
9
-3.97
0.60
122.90
118.93
1
1
1
C6
C5
C7
DT
DT
DT
4
4
4
N
9
-3.17
0.50
117.00
113.83
1
1
1
C4
C5
C6
DA
DA
DA
5
5
5
N
9
3.41
0.50
117.70
121.11
1
1
1
C5
C6
N1
DA
DA
DA
5
5
5
N
9
-5.02
0.60
118.60
113.58
1
1
1
N1
C6
N6
DA
DA
DA
5
5
5
N
9
3.74
0.30
108.30
112.04
1
1
1
O4'
C1'
N1
DT
DT
DT
6
6
6
N
9
-3.63
0.60
122.90
119.27
1
1
1
C6
C5
C7
DT
DT
DT
6
6
6
N
9
3.33
0.50
117.70
121.03
1
1
1
C5
C6
N1
DA
DA
DA
7
7
7
N
9
-4.64
0.60
118.60
113.96
1
1
1
N1
C6
N6
DA
DA
DA
7
7
7
N
9
3.15
0.30
108.30
111.45
1
1
1
O4'
C1'
N1
DT
DT
DT
8
8
8
N
9
-3.86
0.60
122.90
119.04
1
1
1
C6
C5
C7
DT
DT
DT
8
8
8
N
9
-4.30
0.70
121.90
117.60
1
1
1
N3
C2
O2
DC
DC
DC
10
10
10
N
9
2.32
0.30
108.30
110.62
2
2
2
O4'
C1'
N9
DG
DG
DG
12
12
12
N
9
-3.53
0.50
117.00
113.47
2
2
2
C4
C5
C6
DA
DA
DA
13
13
13
N
9
3.62
0.50
117.70
121.32
2
2
2
C5
C6
N1
DA
DA
DA
13
13
13
N
9
-5.36
0.60
118.60
113.24
2
2
2
N1
C6
N6
DA
DA
DA
13
13
13
N
9
3.21
0.30
108.30
111.51
2
2
2
O4'
C1'
N1
DT
DT
DT
14
14
14
N
9
-3.62
0.60
122.90
119.28
2
2
2
C6
C5
C7
DT
DT
DT
14
14
14
N
9
3.21
0.50
117.70
120.91
2
2
2
C5
C6
N1
DA
DA
DA
15
15
15
N
9
-5.23
0.60
118.60
113.37
2
2
2
N1
C6
N6
DA
DA
DA
15
15
15
N
9
2.49
0.30
108.30
110.79
2
2
2
O4'
C1'
N1
DT
DT
DT
16
16
16
N
9
-3.32
0.50
117.00
113.68
2
2
2
C4
C5
C6
DA
DA
DA
17
17
17
N
9
3.60
0.50
117.70
121.30
2
2
2
C5
C6
N1
DA
DA
DA
17
17
17
N
9
-4.96
0.60
118.60
113.64
2
2
2
N1
C6
N6
DA
DA
DA
17
17
17
N
9
-4.01
0.60
122.90
118.89
2
2
2
C6
C5
C7
DT
DT
DT
18
18
18
N
9
-4.78
0.70
121.90
117.12
2
2
2
N3
C2
O2
DC
DC
DC
20
20
20
N
10
5.55
0.30
108.30
113.85
1
1
1
O4'
C1'
N9
DG
DG
DG
1
1
1
N
10
-3.51
0.50
117.00
113.49
1
1
1
C4
C5
C6
DA
DA
DA
3
3
3
N
10
3.67
0.50
117.70
121.37
1
1
1
C5
C6
N1
DA
DA
DA
3
3
3
N
10
-5.42
0.60
118.60
113.18
1
1
1
N1
C6
N6
DA
DA
DA
3
3
3
N
10
-4.00
0.60
122.90
118.90
1
1
1
C6
C5
C7
DT
DT
DT
4
4
4
N
10
3.33
0.30
108.30
111.63
1
1
1
O4'
C1'
N9
DA
DA
DA
5
5
5
N
10
-3.22
0.50
117.00
113.78
1
1
1
C4
C5
C6
DA
DA
DA
5
5
5
N
10
3.69
0.50
117.70
121.39
1
1
1
C5
C6
N1
DA
DA
DA
5
5
5
N
10
-5.21
0.60
118.60
113.39
1
1
1
N1
C6
N6
DA
DA
DA
5
5
5
N
10
3.93
0.30
108.30
112.23
1
1
1
O4'
C1'
N1
DT
DT
DT
6
6
6
N
10
-3.30
0.50
117.00
113.70
1
1
1
C4
C5
C6
DA
DA
DA
7
7
7
N
10
3.70
0.50
117.70
121.40
1
1
1
C5
C6
N1
DA
DA
DA
7
7
7
N
10
-5.57
0.60
118.60
113.03
1
1
1
N1
C6
N6
DA
DA
DA
7
7
7
N
10
-3.61
0.60
122.90
119.29
1
1
1
C6
C5
C7
DT
DT
DT
8
8
8
N
10
-4.50
0.70
121.90
117.40
1
1
1
N3
C2
O2
DC
DC
DC
10
10
10
N
10
2.73
0.30
108.30
111.03
2
2
2
O4'
C1'
N9
DG
DG
DG
12
12
12
N
10
-3.14
0.50
117.00
113.86
2
2
2
C4
C5
C6
DA
DA
DA
13
13
13
N
10
3.62
0.50
117.70
121.32
2
2
2
C5
C6
N1
DA
DA
DA
13
13
13
N
10
-4.98
0.60
118.60
113.62
2
2
2
N1
C6
N6
DA
DA
DA
13
13
13
N
10
3.20
0.30
108.30
111.50
2
2
2
O4'
C1'
N1
DT
DT
DT
14
14
14
N
10
-3.78
0.60
122.90
119.12
2
2
2
C6
C5
C7
DT
DT
DT
14
14
14
N
10
3.23
0.50
117.70
120.93
2
2
2
C5
C6
N1
DA
DA
DA
15
15
15
N
10
-4.75
0.60
118.60
113.85
2
2
2
N1
C6
N6
DA
DA
DA
15
15
15
N
10
-3.90
0.50
117.00
113.10
2
2
2
C4
C5
C6
DA
DA
DA
17
17
17
N
10
3.59
0.50
117.70
121.29
2
2
2
C5
C6
N1
DA
DA
DA
17
17
17
N
10
-6.52
0.60
118.60
112.08
2
2
2
N1
C6
N6
DA
DA
DA
17
17
17
N
10
-4.31
0.60
122.90
118.59
2
2
2
C6
C5
C7
DT
DT
DT
18
18
18
N
10
-4.37
0.70
121.90
117.53
2
2
2
N3
C2
O2
DC
DC
DC
19
19
19
N
10
-5.24
0.70
121.90
116.66
2
2
2
N3
C2
O2
DC
DC
DC
20
20
20
N
11
3.49
0.30
108.30
111.79
1
1
1
O4'
C1'
N9
DG
DG
DG
1
1
1
N
11
2.01
0.30
108.30
110.31
1
1
1
O4'
C1'
N9
DG
DG
DG
2
2
2
N
11
-3.09
0.50
117.00
113.91
1
1
1
C4
C5
C6
DA
DA
DA
3
3
3
N
11
3.65
0.50
117.70
121.35
1
1
1
C5
C6
N1
DA
DA
DA
3
3
3
N
11
-4.27
0.60
118.60
114.33
1
1
1
N1
C6
N6
DA
DA
DA
3
3
3
N
11
1.87
0.30
108.30
110.17
1
1
1
O4'
C1'
N1
DT
DT
DT
4
4
4
N
11
-5.30
0.60
122.90
117.60
1
1
1
C6
C5
C7
DT
DT
DT
4
4
4
N
11
-3.29
0.50
117.00
113.71
1
1
1
C4
C5
C6
DA
DA
DA
5
5
5
N
11
3.81
0.50
117.70
121.51
1
1
1
C5
C6
N1
DA
DA
DA
5
5
5
N
11
-5.34
0.60
118.60
113.26
1
1
1
N1
C6
N6
DA
DA
DA
5
5
5
N
11
-3.30
0.50
117.00
113.70
1
1
1
C4
C5
C6
DA
DA
DA
7
7
7
N
11
3.90
0.50
117.70
121.60
1
1
1
C5
C6
N1
DA
DA
DA
7
7
7
N
11
-5.21
0.60
118.60
113.39
1
1
1
N1
C6
N6
DA
DA
DA
7
7
7
N
11
2.37
0.30
108.30
110.67
1
1
1
O4'
C1'
N1
DC
DC
DC
10
10
10
N
11
-4.84
0.70
121.90
117.06
1
1
1
N3
C2
O2
DC
DC
DC
10
10
10
N
11
-3.59
0.50
117.00
113.41
2
2
2
C4
C5
C6
DA
DA
DA
13
13
13
N
11
3.48
0.50
117.70
121.18
2
2
2
C5
C6
N1
DA
DA
DA
13
13
13
N
11
-5.45
0.60
118.60
113.15
2
2
2
N1
C6
N6
DA
DA
DA
13
13
13
N
11
1.89
0.30
108.30
110.19
2
2
2
O4'
C1'
N1
DT
DT
DT
14
14
14
N
11
-3.70
0.60
122.90
119.20
2
2
2
C6
C5
C7
DT
DT
DT
14
14
14
N
11
3.89
0.60
106.00
109.89
2
2
2
O4'
C4'
C3'
DA
DA
DA
15
15
15
N
11
-3.27
0.50
117.00
113.73
2
2
2
C4
C5
C6
DA
DA
DA
15
15
15
N
11
3.57
0.50
117.70
121.27
2
2
2
C5
C6
N1
DA
DA
DA
15
15
15
N
11
-6.38
0.60
118.60
112.22
2
2
2
N1
C6
N6
DA
DA
DA
15
15
15
N
11
2.95
0.30
108.30
111.25
2
2
2
O4'
C1'
N1
DT
DT
DT
16
16
16
N
11
-3.81
0.50
117.00
113.19
2
2
2
C4
C5
C6
DA
DA
DA
17
17
17
N
11
3.86
0.50
117.70
121.56
2
2
2
C5
C6
N1
DA
DA
DA
17
17
17
N
11
-6.20
0.60
118.60
112.40
2
2
2
N1
C6
N6
DA
DA
DA
17
17
17
N
11
-3.68
0.60
122.90
119.22
2
2
2
C6
C5
C7
DT
DT
DT
18
18
18
N
11
3.46
0.30
108.30
111.76
2
2
2
O4'
C1'
N1
DC
DC
DC
19
19
19
N
11
-4.57
0.70
121.90
117.33
2
2
2
N3
C2
O2
DC
DC
DC
19
19
19
N
11
-4.71
0.70
121.90
117.19
2
2
2
N3
C2
O2
DC
DC
DC
20
20
20
N
5'-D(*GP*GP*AP*TP*AP*TP*AP*TP*CP*C)-3'/Netropsin
minimized average structure, model 1
minimized average
NMR Structure of the Self-Complementary 10 mer DNA Duplex 5'-GGATATATCC-3' in Complex with Netropsin
1
N
N
1
N
N
2
N
N
hydrog
WATSON-CRICK
1
DG
1
A
N1
DG
1
1_555
2
DC
20
B
N3
DC
10
1_555
hydrog
WATSON-CRICK
1
DG
1
A
N2
DG
1
1_555
2
DC
20
B
O2
DC
10
1_555
hydrog
WATSON-CRICK
1
DG
1
A
O6
DG
1
1_555
2
DC
20
B
N4
DC
10
1_555
hydrog
WATSON-CRICK
1
DG
2
A
N1
DG
2
1_555
2
DC
19
B
N3
DC
9
1_555
hydrog
WATSON-CRICK
1
DG
2
A
N2
DG
2
1_555
2
DC
19
B
O2
DC
9
1_555
hydrog
WATSON-CRICK
1
DG
2
A
O6
DG
2
1_555
2
DC
19
B
N4
DC
9
1_555
hydrog
WATSON-CRICK
1
DA
3
A
N1
DA
3
1_555
2
DT
18
B
N3
DT
8
1_555
hydrog
WATSON-CRICK
1
DA
3
A
N6
DA
3
1_555
2
DT
18
B
O4
DT
8
1_555
hydrog
WATSON-CRICK
1
DT
4
A
N3
DT
4
1_555
2
DA
17
B
N1
DA
7
1_555
hydrog
WATSON-CRICK
1
DT
4
A
O4
DT
4
1_555
2
DA
17
B
N6
DA
7
1_555
hydrog
WATSON-CRICK
1
DA
5
A
N1
DA
5
1_555
2
DT
16
B
N3
DT
6
1_555
hydrog
WATSON-CRICK
1
DA
5
A
N6
DA
5
1_555
2
DT
16
B
O4
DT
6
1_555
hydrog
WATSON-CRICK
1
DT
6
A
N3
DT
6
1_555
2
DA
15
B
N1
DA
5
1_555
hydrog
WATSON-CRICK
1
DT
6
A
O4
DT
6
1_555
2
DA
15
B
N6
DA
5
1_555
hydrog
WATSON-CRICK
1
DA
7
A
N1
DA
7
1_555
2
DT
14
B
N3
DT
4
1_555
hydrog
WATSON-CRICK
1
DA
7
A
N6
DA
7
1_555
2
DT
14
B
O4
DT
4
1_555
hydrog
WATSON-CRICK
1
DT
8
A
N3
DT
8
1_555
2
DA
13
B
N1
DA
3
1_555
hydrog
WATSON-CRICK
1
DT
8
A
O4
DT
8
1_555
2
DA
13
B
N6
DA
3
1_555
hydrog
WATSON-CRICK
1
DC
9
A
N3
DC
9
1_555
2
DG
12
B
N1
DG
2
1_555
hydrog
WATSON-CRICK
1
DC
9
A
N4
DC
9
1_555
2
DG
12
B
O6
DG
2
1_555
hydrog
WATSON-CRICK
1
DC
9
A
O2
DC
9
1_555
2
DG
12
B
N2
DG
2
1_555
hydrog
WATSON-CRICK
1
DC
10
A
N3
DC
10
1_555
2
DG
11
B
N1
DG
1
1_555
hydrog
WATSON-CRICK
1
DC
10
A
N4
DC
10
1_555
2
DG
11
B
O6
DG
1
1_555
hydrog
WATSON-CRICK
1
DC
10
A
O2
DC
10
1_555
2
DG
11
B
N2
DG
1
1_555
DNA
microstructure, Induced DNA binding, DNA minor groove variations, DNA
2LWH
PDB
1
2LWH
1
10
2LWH
1
10
2LWH
1
1
1
10
11
20
2LWH
11
20
2LWH
2
1
1
10
BINDING SITE FOR RESIDUE NT 1 101
Software
12
1
DT
4
A
DT
4
12
1_555
1
DA
5
A
DA
5
12
1_555
1
DT
6
A
DT
6
12
1_555
1
DA
7
A
DA
7
12
1_555
1
DT
8
A
DT
8
12
1_555
1
DC
9
A
DC
9
12
1_555
2
DT
14
B
DT
4
12
1_555
2
DA
15
B
DA
5
12
1_555
2
DT
16
B
DT
6
12
1_555
2
DA
17
B
DA
7
12
1_555
2
DT
18
B
DT
8
12
1_555
2
DC
19
B
DC
9
12
1_555