1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Chartron, J.W. Vandervelde, D.G. Clemons Jr., W.M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Cell Rep 2211-1247 2 1620 1632 10.1016/j.celrep.2012.10.010 23142665 Structures of the Sgt2/SGTA Dimerization Domain with the Get5/UBL4A UBL Domain Reveal an Interaction that Forms a Conserved Dynamic Interface. 2012 10.2210/pdb2lxa/pdb pdb_00002lxa 9999.677 Ubiquitin-like protein MDY2 ubiquitin-like domain 1 man polymer Golgi to ER traffic protein 5, Mating-deficient protein 2, Translation machinery-associated protein 24 no no MVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKPNL EHHHHHH MVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKPNL EHHHHHH A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Baker's yeast ATCC 204508 / S288c sample GET5, MDY2, TMA24, YOL111C 559292 Saccharomyces cerevisiae 562 Escherichia coli NiCo21(DE3) plasmid pET33b database_2 pdbx_database_status pdbx_nmr_software struct_ref_seq_dif repository Initial release Database references Database references Data collection Database references Other 1 0 2012-11-21 1 1 2012-11-28 1 2 2013-01-16 1 3 2023-06-14 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.status_code_nmr_data _pdbx_nmr_software.name _struct_ref_seq_dif.details Crystal structure of the same protein Crystal structure of SGTA dimerization domain, the human homolog of the Get5 binding partner, Sgt2 Crystal structure of SGTA dimerization domain, the human homolog of Get5 binding partner, Sgt2 Crystal structure of SGTA dimerization domain, the human homolog of Get5 binding partner, Sgt2 BMRB Y RCSB 2012-08-19 REL REL REL REL structures with the lowest energy 100 10 2D 1H-15N HSQC 3D CBCA(CO)NH 3D HNCACB 3D HCCH-TOCSY 3D 1H-15N TOCSY 2D 1H-13C HSQC aliphatic 3D 1H-15N NOESY 1 mM [U-100% 13C; U-100% 15N] 20 mM 100 mM 0.02 % 100 6.1 ambient 297.5 K REFINED IN EXPLICIT WATER simulated annealing 1 lowest energy 1 mM [U-100% 13C; U-100% 15N] Get5, 20 mM sodium phosphate, 100 mM sodium chloride, 0.02 % sodium azide, 90% H2O/10% D2O 90% H2O/10% D2O Varian collection VnmrJ CCPN chemical shift assignment Analysis Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax processing NMRPipe Cornilescu, Delaglio and Bax data analysis TALOS+ Linge, O'Donoghue and Nilges structure solution ARIA 2.3 Linge, O'Donoghue and Nilges refinement ARIA 2.3 600 Varian INOVA Varian INOVA MET 73 n 1 MET 73 A VAL 74 n 2 VAL 74 A HIS 75 n 3 HIS 75 A LEU 76 n 4 LEU 76 A THR 77 n 5 THR 77 A LEU 78 n 6 LEU 78 A LYS 79 n 7 LYS 79 A LYS 80 n 8 LYS 80 A ILE 81 n 9 ILE 81 A GLN 82 n 10 GLN 82 A ALA 83 n 11 ALA 83 A PRO 84 n 12 PRO 84 A LYS 85 n 13 LYS 85 A PHE 86 n 14 PHE 86 A SER 87 n 15 SER 87 A ILE 88 n 16 ILE 88 A GLU 89 n 17 GLU 89 A HIS 90 n 18 HIS 90 A ASP 91 n 19 ASP 91 A PHE 92 n 20 PHE 92 A SER 93 n 21 SER 93 A PRO 94 n 22 PRO 94 A SER 95 n 23 SER 95 A ASP 96 n 24 ASP 96 A THR 97 n 25 THR 97 A ILE 98 n 26 ILE 98 A LEU 99 n 27 LEU 99 A GLN 100 n 28 GLN 100 A ILE 101 n 29 ILE 101 A LYS 102 n 30 LYS 102 A GLN 103 n 31 GLN 103 A HIS 104 n 32 HIS 104 A LEU 105 n 33 LEU 105 A ILE 106 n 34 ILE 106 A SER 107 n 35 SER 107 A GLU 108 n 36 GLU 108 A GLU 109 n 37 GLU 109 A LYS 110 n 38 LYS 110 A ALA 111 n 39 ALA 111 A SER 112 n 40 SER 112 A HIS 113 n 41 HIS 113 A ILE 114 n 42 ILE 114 A SER 115 n 43 SER 115 A GLU 116 n 44 GLU 116 A ILE 117 n 45 ILE 117 A LYS 118 n 46 LYS 118 A LEU 119 n 47 LEU 119 A LEU 120 n 48 LEU 120 A LEU 121 n 49 LEU 121 A LYS 122 n 50 LYS 122 A GLY 123 n 51 GLY 123 A LYS 124 n 52 LYS 124 A VAL 125 n 53 VAL 125 A LEU 126 n 54 LEU 126 A HIS 127 n 55 HIS 127 A ASP 128 n 56 ASP 128 A ASN 129 n 57 ASN 129 A LEU 130 n 58 LEU 130 A PHE 131 n 59 PHE 131 A LEU 132 n 60 LEU 132 A SER 133 n 61 SER 133 A ASP 134 n 62 ASP 134 A LEU 135 n 63 LEU 135 A LYS 136 n 64 LYS 136 A VAL 137 n 65 VAL 137 A THR 138 n 66 THR 138 A PRO 139 n 67 PRO 139 A ALA 140 n 68 ALA 140 A ASN 141 n 69 ASN 141 A SER 142 n 70 SER 142 A THR 143 n 71 THR 143 A ILE 144 n 72 ILE 144 A THR 145 n 73 THR 145 A VAL 146 n 74 VAL 146 A MET 147 n 75 MET 147 A ILE 148 n 76 ILE 148 A LYS 149 n 77 LYS 149 A PRO 150 n 78 PRO 150 A ASN 151 n 79 ASN 151 A LEU 152 n 80 LEU 152 A GLU 153 n 81 GLU 153 A HIS 154 n 82 HIS 154 A HIS 155 n 83 HIS 155 A HIS 156 n 84 HIS 156 A HIS 157 n 85 HIS 157 A HIS 158 n 86 HIS 158 A HIS 159 n 87 HIS 159 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O PHE 86 A O PHE 14 A N LYS 80 A N LYS 8 A N LEU 76 A N LEU 4 A O HIS 90 A O HIS 18 A O PHE 86 A O PHE 14 A N LYS 80 A N LYS 8 A N LYS 79 A N LYS 7 A O ILE 144 A O ILE 72 A O MET 147 A O MET 75 A N LYS 118 A N LYS 46 A N LEU 121 A N LEU 49 A O LYS 124 A O LYS 52 1 A GLN 82 -104.15 -89.75 1 A LYS 85 72.56 143.51 1 A PHE 86 -175.08 -177.52 1 A SER 112 -103.16 -60.44 2 A GLN 82 -106.09 -91.41 2 A LYS 85 72.10 148.62 2 A PHE 86 -178.90 -177.24 2 A LYS 136 60.36 77.32 2 A ASN 151 -105.88 73.78 3 A GLN 82 -101.54 -88.71 3 A LYS 85 74.67 147.13 3 A ASN 151 66.14 168.59 3 A GLU 153 -68.57 94.29 3 A HIS 158 69.06 -178.56 4 A GLN 82 -114.68 -91.77 4 A LYS 85 75.79 150.37 4 A PHE 86 -178.71 -177.22 4 A LYS 136 58.67 72.43 4 A PRO 150 -68.92 85.93 4 A ASN 151 -68.27 82.39 4 A HIS 158 62.95 78.86 5 A GLN 82 -116.49 -88.13 5 A LYS 85 74.91 147.98 5 A PRO 150 -58.63 100.91 5 A ASN 151 70.48 97.33 5 A HIS 155 64.04 82.47 6 A GLN 82 -116.19 -95.20 6 A LYS 85 74.65 154.47 6 A PHE 86 179.84 -177.25 6 A LYS 136 57.44 72.74 6 A HIS 155 -97.94 41.05 7 A GLN 82 -102.38 -96.28 7 A LYS 85 74.70 143.13 7 A LYS 136 55.01 76.14 8 A GLN 82 -98.36 -90.85 8 A LYS 85 75.74 154.73 8 A PHE 86 -175.21 -179.04 8 A LYS 136 59.82 75.33 8 A HIS 156 -142.50 35.69 9 A VAL 74 55.75 80.27 9 A GLN 82 -114.69 -85.92 9 A LYS 85 74.44 143.63 9 A PHE 86 -178.83 -177.17 9 A SER 112 -108.91 -66.34 9 A LYS 136 58.75 70.08 10 A GLN 82 -115.84 -90.81 10 A LYS 85 73.52 145.68 10 A PHE 86 -174.41 -177.35 10 A SER 112 -92.74 -64.40 10 A LYS 136 60.90 75.18 10 A ASN 141 -104.07 43.85 Solution structure of the Get5 ubiquitin-like domain 1 N N A THR 97 A THR 25 HELX_P A GLU 108 A GLU 36 1 1 12 A PHE 131 A PHE 59 HELX_P A LYS 136 A LYS 64 1 2 6 A THR 138 A THR 66 HELX_P A ASN 141 A ASN 69 5 3 4 PROTEIN BINDING ubiquitin-like domain, protein-protein interaction, Sgt2 binding domain, GET pathway, PROTEIN BINDING A ALA 83 A ALA 11 1 A PRO 84 A PRO 12 -2.63 A ALA 83 A ALA 11 2 A PRO 84 A PRO 12 -1.23 A ALA 83 A ALA 11 3 A PRO 84 A PRO 12 -7.15 A ALA 83 A ALA 11 4 A PRO 84 A PRO 12 -3.07 A ALA 83 A ALA 11 5 A PRO 84 A PRO 12 -1.99 A ALA 83 A ALA 11 6 A PRO 84 A PRO 12 -6.82 A ALA 83 A ALA 11 7 A PRO 84 A PRO 12 -2.95 A ALA 83 A ALA 11 8 A PRO 84 A PRO 12 -7.50 A ALA 83 A ALA 11 9 A PRO 84 A PRO 12 -3.50 A ALA 83 A ALA 11 10 A PRO 84 A PRO 12 -2.18 MDY2_YEAST UNP 1 74 Q12285 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKPN 74 151 2LXA 74 151 Q12285 A 1 2 79 1 initiating methionine MET 73 2LXA A Q12285 UNP 1 1 expression tag LEU 152 2LXA A Q12285 UNP 80 1 expression tag GLU 153 2LXA A Q12285 UNP 81 1 expression tag HIS 154 2LXA A Q12285 UNP 82 1 expression tag HIS 155 2LXA A Q12285 UNP 83 1 expression tag HIS 156 2LXA A Q12285 UNP 84 1 expression tag HIS 157 2LXA A Q12285 UNP 85 1 expression tag HIS 158 2LXA A Q12285 UNP 86 1 expression tag HIS 159 2LXA A Q12285 UNP 87 3 5 anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel A PHE 86 A PHE 14 A SER 87 A SER 15 A HIS 75 A HIS 3 A LYS 80 A LYS 8 A HIS 90 A HIS 18 A ASP 91 A ASP 19 A PHE 86 A PHE 14 A SER 87 A SER 15 A HIS 75 A HIS 3 A LYS 80 A LYS 8 A THR 143 A THR 71 A ILE 148 A ILE 76 A ILE 117 A ILE 45 A LEU 121 A LEU 49 A LYS 124 A LYS 52 A VAL 125 A VAL 53