1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Chartron, J.W.
Vandervelde, D.G.
Clemons Jr., W.M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Cell Rep
2211-1247
2
1620
1632
10.1016/j.celrep.2012.10.010
23142665
Structures of the Sgt2/SGTA Dimerization Domain with the Get5/UBL4A UBL Domain Reveal an Interaction that Forms a Conserved Dynamic Interface.
2012
10.2210/pdb2lxa/pdb
pdb_00002lxa
9999.677
Ubiquitin-like protein MDY2
ubiquitin-like domain
1
man
polymer
Golgi to ER traffic protein 5, Mating-deficient protein 2, Translation machinery-associated protein 24
no
no
MVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKPNL
EHHHHHH
MVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKPNL
EHHHHHH
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Baker's yeast
ATCC 204508 / S288c
sample
GET5, MDY2, TMA24, YOL111C
559292
Saccharomyces cerevisiae
562
Escherichia coli
NiCo21(DE3)
plasmid
pET33b
database_2
pdbx_database_status
pdbx_nmr_software
struct_ref_seq_dif
repository
Initial release
Database references
Database references
Data collection
Database references
Other
1
0
2012-11-21
1
1
2012-11-28
1
2
2013-01-16
1
3
2023-06-14
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_nmr_data
_pdbx_nmr_software.name
_struct_ref_seq_dif.details
Crystal structure of the same protein
Crystal structure of SGTA dimerization domain, the human homolog of the Get5 binding partner, Sgt2
Crystal structure of SGTA dimerization domain, the human homolog of Get5 binding partner, Sgt2
Crystal structure of SGTA dimerization domain, the human homolog of Get5 binding partner, Sgt2
BMRB
Y
RCSB
2012-08-19
REL
REL
REL
REL
structures with the lowest energy
100
10
2D 1H-15N HSQC
3D CBCA(CO)NH
3D HNCACB
3D HCCH-TOCSY
3D 1H-15N TOCSY
2D 1H-13C HSQC aliphatic
3D 1H-15N NOESY
1
mM
[U-100% 13C; U-100% 15N]
20
mM
100
mM
0.02
%
100
6.1
ambient
297.5
K
REFINED IN EXPLICIT WATER
simulated annealing
1
lowest energy
1 mM [U-100% 13C; U-100% 15N] Get5, 20 mM sodium phosphate, 100 mM sodium chloride, 0.02 % sodium azide, 90% H2O/10% D2O
90% H2O/10% D2O
Varian
collection
VnmrJ
CCPN
chemical shift assignment
Analysis
Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
processing
NMRPipe
Cornilescu, Delaglio and Bax
data analysis
TALOS+
Linge, O'Donoghue and Nilges
structure solution
ARIA
2.3
Linge, O'Donoghue and Nilges
refinement
ARIA
2.3
600
Varian
INOVA
Varian INOVA
MET
73
n
1
MET
73
A
VAL
74
n
2
VAL
74
A
HIS
75
n
3
HIS
75
A
LEU
76
n
4
LEU
76
A
THR
77
n
5
THR
77
A
LEU
78
n
6
LEU
78
A
LYS
79
n
7
LYS
79
A
LYS
80
n
8
LYS
80
A
ILE
81
n
9
ILE
81
A
GLN
82
n
10
GLN
82
A
ALA
83
n
11
ALA
83
A
PRO
84
n
12
PRO
84
A
LYS
85
n
13
LYS
85
A
PHE
86
n
14
PHE
86
A
SER
87
n
15
SER
87
A
ILE
88
n
16
ILE
88
A
GLU
89
n
17
GLU
89
A
HIS
90
n
18
HIS
90
A
ASP
91
n
19
ASP
91
A
PHE
92
n
20
PHE
92
A
SER
93
n
21
SER
93
A
PRO
94
n
22
PRO
94
A
SER
95
n
23
SER
95
A
ASP
96
n
24
ASP
96
A
THR
97
n
25
THR
97
A
ILE
98
n
26
ILE
98
A
LEU
99
n
27
LEU
99
A
GLN
100
n
28
GLN
100
A
ILE
101
n
29
ILE
101
A
LYS
102
n
30
LYS
102
A
GLN
103
n
31
GLN
103
A
HIS
104
n
32
HIS
104
A
LEU
105
n
33
LEU
105
A
ILE
106
n
34
ILE
106
A
SER
107
n
35
SER
107
A
GLU
108
n
36
GLU
108
A
GLU
109
n
37
GLU
109
A
LYS
110
n
38
LYS
110
A
ALA
111
n
39
ALA
111
A
SER
112
n
40
SER
112
A
HIS
113
n
41
HIS
113
A
ILE
114
n
42
ILE
114
A
SER
115
n
43
SER
115
A
GLU
116
n
44
GLU
116
A
ILE
117
n
45
ILE
117
A
LYS
118
n
46
LYS
118
A
LEU
119
n
47
LEU
119
A
LEU
120
n
48
LEU
120
A
LEU
121
n
49
LEU
121
A
LYS
122
n
50
LYS
122
A
GLY
123
n
51
GLY
123
A
LYS
124
n
52
LYS
124
A
VAL
125
n
53
VAL
125
A
LEU
126
n
54
LEU
126
A
HIS
127
n
55
HIS
127
A
ASP
128
n
56
ASP
128
A
ASN
129
n
57
ASN
129
A
LEU
130
n
58
LEU
130
A
PHE
131
n
59
PHE
131
A
LEU
132
n
60
LEU
132
A
SER
133
n
61
SER
133
A
ASP
134
n
62
ASP
134
A
LEU
135
n
63
LEU
135
A
LYS
136
n
64
LYS
136
A
VAL
137
n
65
VAL
137
A
THR
138
n
66
THR
138
A
PRO
139
n
67
PRO
139
A
ALA
140
n
68
ALA
140
A
ASN
141
n
69
ASN
141
A
SER
142
n
70
SER
142
A
THR
143
n
71
THR
143
A
ILE
144
n
72
ILE
144
A
THR
145
n
73
THR
145
A
VAL
146
n
74
VAL
146
A
MET
147
n
75
MET
147
A
ILE
148
n
76
ILE
148
A
LYS
149
n
77
LYS
149
A
PRO
150
n
78
PRO
150
A
ASN
151
n
79
ASN
151
A
LEU
152
n
80
LEU
152
A
GLU
153
n
81
GLU
153
A
HIS
154
n
82
HIS
154
A
HIS
155
n
83
HIS
155
A
HIS
156
n
84
HIS
156
A
HIS
157
n
85
HIS
157
A
HIS
158
n
86
HIS
158
A
HIS
159
n
87
HIS
159
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
PHE
86
A
O
PHE
14
A
N
LYS
80
A
N
LYS
8
A
N
LEU
76
A
N
LEU
4
A
O
HIS
90
A
O
HIS
18
A
O
PHE
86
A
O
PHE
14
A
N
LYS
80
A
N
LYS
8
A
N
LYS
79
A
N
LYS
7
A
O
ILE
144
A
O
ILE
72
A
O
MET
147
A
O
MET
75
A
N
LYS
118
A
N
LYS
46
A
N
LEU
121
A
N
LEU
49
A
O
LYS
124
A
O
LYS
52
1
A
GLN
82
-104.15
-89.75
1
A
LYS
85
72.56
143.51
1
A
PHE
86
-175.08
-177.52
1
A
SER
112
-103.16
-60.44
2
A
GLN
82
-106.09
-91.41
2
A
LYS
85
72.10
148.62
2
A
PHE
86
-178.90
-177.24
2
A
LYS
136
60.36
77.32
2
A
ASN
151
-105.88
73.78
3
A
GLN
82
-101.54
-88.71
3
A
LYS
85
74.67
147.13
3
A
ASN
151
66.14
168.59
3
A
GLU
153
-68.57
94.29
3
A
HIS
158
69.06
-178.56
4
A
GLN
82
-114.68
-91.77
4
A
LYS
85
75.79
150.37
4
A
PHE
86
-178.71
-177.22
4
A
LYS
136
58.67
72.43
4
A
PRO
150
-68.92
85.93
4
A
ASN
151
-68.27
82.39
4
A
HIS
158
62.95
78.86
5
A
GLN
82
-116.49
-88.13
5
A
LYS
85
74.91
147.98
5
A
PRO
150
-58.63
100.91
5
A
ASN
151
70.48
97.33
5
A
HIS
155
64.04
82.47
6
A
GLN
82
-116.19
-95.20
6
A
LYS
85
74.65
154.47
6
A
PHE
86
179.84
-177.25
6
A
LYS
136
57.44
72.74
6
A
HIS
155
-97.94
41.05
7
A
GLN
82
-102.38
-96.28
7
A
LYS
85
74.70
143.13
7
A
LYS
136
55.01
76.14
8
A
GLN
82
-98.36
-90.85
8
A
LYS
85
75.74
154.73
8
A
PHE
86
-175.21
-179.04
8
A
LYS
136
59.82
75.33
8
A
HIS
156
-142.50
35.69
9
A
VAL
74
55.75
80.27
9
A
GLN
82
-114.69
-85.92
9
A
LYS
85
74.44
143.63
9
A
PHE
86
-178.83
-177.17
9
A
SER
112
-108.91
-66.34
9
A
LYS
136
58.75
70.08
10
A
GLN
82
-115.84
-90.81
10
A
LYS
85
73.52
145.68
10
A
PHE
86
-174.41
-177.35
10
A
SER
112
-92.74
-64.40
10
A
LYS
136
60.90
75.18
10
A
ASN
141
-104.07
43.85
Solution structure of the Get5 ubiquitin-like domain
1
N
N
A
THR
97
A
THR
25
HELX_P
A
GLU
108
A
GLU
36
1
1
12
A
PHE
131
A
PHE
59
HELX_P
A
LYS
136
A
LYS
64
1
2
6
A
THR
138
A
THR
66
HELX_P
A
ASN
141
A
ASN
69
5
3
4
PROTEIN BINDING
ubiquitin-like domain, protein-protein interaction, Sgt2 binding domain, GET pathway, PROTEIN BINDING
A
ALA
83
A
ALA
11
1
A
PRO
84
A
PRO
12
-2.63
A
ALA
83
A
ALA
11
2
A
PRO
84
A
PRO
12
-1.23
A
ALA
83
A
ALA
11
3
A
PRO
84
A
PRO
12
-7.15
A
ALA
83
A
ALA
11
4
A
PRO
84
A
PRO
12
-3.07
A
ALA
83
A
ALA
11
5
A
PRO
84
A
PRO
12
-1.99
A
ALA
83
A
ALA
11
6
A
PRO
84
A
PRO
12
-6.82
A
ALA
83
A
ALA
11
7
A
PRO
84
A
PRO
12
-2.95
A
ALA
83
A
ALA
11
8
A
PRO
84
A
PRO
12
-7.50
A
ALA
83
A
ALA
11
9
A
PRO
84
A
PRO
12
-3.50
A
ALA
83
A
ALA
11
10
A
PRO
84
A
PRO
12
-2.18
MDY2_YEAST
UNP
1
74
Q12285
VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKPN
74
151
2LXA
74
151
Q12285
A
1
2
79
1
initiating methionine
MET
73
2LXA
A
Q12285
UNP
1
1
expression tag
LEU
152
2LXA
A
Q12285
UNP
80
1
expression tag
GLU
153
2LXA
A
Q12285
UNP
81
1
expression tag
HIS
154
2LXA
A
Q12285
UNP
82
1
expression tag
HIS
155
2LXA
A
Q12285
UNP
83
1
expression tag
HIS
156
2LXA
A
Q12285
UNP
84
1
expression tag
HIS
157
2LXA
A
Q12285
UNP
85
1
expression tag
HIS
158
2LXA
A
Q12285
UNP
86
1
expression tag
HIS
159
2LXA
A
Q12285
UNP
87
3
5
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
A
PHE
86
A
PHE
14
A
SER
87
A
SER
15
A
HIS
75
A
HIS
3
A
LYS
80
A
LYS
8
A
HIS
90
A
HIS
18
A
ASP
91
A
ASP
19
A
PHE
86
A
PHE
14
A
SER
87
A
SER
15
A
HIS
75
A
HIS
3
A
LYS
80
A
LYS
8
A
THR
143
A
THR
71
A
ILE
148
A
ILE
76
A
ILE
117
A
ILE
45
A
LEU
121
A
LEU
49
A
LYS
124
A
LYS
52
A
VAL
125
A
VAL
53