1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Serrano, P.
Geralt, M.
Dutta, S.K.
Wuthrich, K.
Joint Center for Structural Genomics (JCSG)
Partnership for T-Cell Biology (TCELL)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be Published
0353
NMR structure of the N-terminal RNA Binding domain 1 (RRM1) of the protein RBM10 from Homo sapiens
10.2210/pdb2lxi/pdb
pdb_00002lxi
10479.848
RNA-binding protein 10
RRM 1 domain residues 128-218
1
man
polymer
G patch domain-containing protein 9, RNA-binding motif protein 10, RNA-binding protein S1-1, S1-1
no
no
SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS
DPKPKINEDWL
SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS
DPKPKINEDWL
A
JCSG-421711
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
RBM10, DXS8237E, GPATC9, GPATCH9, KIAA0122
9606
Homo sapiens
562
Escherichia coli
pSpeedET
Joint Center for Structural Genomics
JCSG
PSI:Biology
Partnership for T-Cell Biology
TCELL
PSI:Biology
database_2
pdbx_database_status
pdbx_nmr_software
pdbx_nmr_spectrometer
repository
Initial release
Structure summary
Data collection
Database references
Other
1
0
2012-10-10
1
1
2013-06-12
1
2
2023-06-14
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_nmr_data
_pdbx_nmr_software.name
_pdbx_nmr_spectrometer.model
Y
BMRB
Y
RCSB
2012-08-27
REL
REL
REL
REL
target function
80
19
2D 1H-15N HSQC
3D 1H-13C NOESY aliphatic
3D 1H-13C NOESY aromatic
3D 1H-15N NOESY
APSY 4D-HACANH
APSY 5D-CBCACONH
APSY 5D-HACACONH
1.2
mM
[U-98% 13C; U-98% 15N]
50
mM
20
mM
5
mM
0.220
6.5
ambient
298
K
molecular dynamics
1
lowest energy
1.2 mM [U-98% 13C; U-98% 15N] protein, 50 mM sodium chloride, 20 mM sodium phosphate, 5 mM sodium azide, 95% H2O/5% D2O
95% H2O/5% D2O
Guntert P.
refinement
CYANA
LUGINB, H.L., WUTHRICH, K.
refinement
OPALp
600
Bruker
AVANCE
Bruker Avance
800
Bruker
AVANCE
Bruker Avance
SER
1
n
1
SER
1
A
ASN
2
n
2
ASN
2
A
ILE
3
n
3
ILE
3
A
VAL
4
n
4
VAL
4
A
MET
5
n
5
MET
5
A
LEU
6
n
6
LEU
6
A
ARG
7
n
7
ARG
7
A
MET
8
n
8
MET
8
A
LEU
9
n
9
LEU
9
A
PRO
10
n
10
PRO
10
A
GLN
11
n
11
GLN
11
A
ALA
12
n
12
ALA
12
A
ALA
13
n
13
ALA
13
A
THR
14
n
14
THR
14
A
GLU
15
n
15
GLU
15
A
ASP
16
n
16
ASP
16
A
ASP
17
n
17
ASP
17
A
ILE
18
n
18
ILE
18
A
ARG
19
n
19
ARG
19
A
GLY
20
n
20
GLY
20
A
GLN
21
n
21
GLN
21
A
LEU
22
n
22
LEU
22
A
GLN
23
n
23
GLN
23
A
SER
24
n
24
SER
24
A
HIS
25
n
25
HIS
25
A
GLY
26
n
26
GLY
26
A
VAL
27
n
27
VAL
27
A
GLN
28
n
28
GLN
28
A
ALA
29
n
29
ALA
29
A
ARG
30
n
30
ARG
30
A
GLU
31
n
31
GLU
31
A
VAL
32
n
32
VAL
32
A
ARG
33
n
33
ARG
33
A
LEU
34
n
34
LEU
34
A
MET
35
n
35
MET
35
A
ARG
36
n
36
ARG
36
A
ASN
37
n
37
ASN
37
A
LYS
38
n
38
LYS
38
A
SER
39
n
39
SER
39
A
SER
40
n
40
SER
40
A
GLY
41
n
41
GLY
41
A
GLN
42
n
42
GLN
42
A
SER
43
n
43
SER
43
A
ARG
44
n
44
ARG
44
A
GLY
45
n
45
GLY
45
A
PHE
46
n
46
PHE
46
A
ALA
47
n
47
ALA
47
A
PHE
48
n
48
PHE
48
A
VAL
49
n
49
VAL
49
A
GLU
50
n
50
GLU
50
A
PHE
51
n
51
PHE
51
A
SER
52
n
52
SER
52
A
HIS
53
n
53
HIS
53
A
LEU
54
n
54
LEU
54
A
GLN
55
n
55
GLN
55
A
ASP
56
n
56
ASP
56
A
ALA
57
n
57
ALA
57
A
THR
58
n
58
THR
58
A
ARG
59
n
59
ARG
59
A
TRP
60
n
60
TRP
60
A
MET
61
n
61
MET
61
A
GLU
62
n
62
GLU
62
A
ALA
63
n
63
ALA
63
A
ASN
64
n
64
ASN
64
A
GLN
65
n
65
GLN
65
A
HIS
66
n
66
HIS
66
A
SER
67
n
67
SER
67
A
LEU
68
n
68
LEU
68
A
ASN
69
n
69
ASN
69
A
ILE
70
n
70
ILE
70
A
LEU
71
n
71
LEU
71
A
GLY
72
n
72
GLY
72
A
GLN
73
n
73
GLN
73
A
LYS
74
n
74
LYS
74
A
VAL
75
n
75
VAL
75
A
SER
76
n
76
SER
76
A
MET
77
n
77
MET
77
A
HIS
78
n
78
HIS
78
A
TYR
79
n
79
TYR
79
A
SER
80
n
80
SER
80
A
ASP
81
n
81
ASP
81
A
PRO
82
n
82
PRO
82
A
LYS
83
n
83
LYS
83
A
PRO
84
n
84
PRO
84
A
LYS
85
n
85
LYS
85
A
ILE
86
n
86
ILE
86
A
ASN
87
n
87
ASN
87
A
GLU
88
n
88
GLU
88
A
ASP
89
n
89
ASP
89
A
TRP
90
n
90
TRP
90
A
LEU
91
n
91
LEU
91
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
VAL
49
A
O
VAL
49
A
N
VAL
4
A
N
VAL
4
A
N
MET
5
A
N
MET
5
A
O
HIS
78
A
O
HIS
78
A
O
VAL
75
A
O
VAL
75
A
N
LEU
68
A
N
LEU
68
1
A
A
ASN
LYS
37
38
-144.83
2
A
A
GLN
ALA
28
29
-142.80
5
A
A
VAL
GLN
27
28
-149.13
8
A
A
GLN
ALA
28
29
-146.03
9
A
A
GLN
ALA
28
29
-143.21
12
A
A
GLN
ALA
28
29
149.71
15
A
A
ALA
PHE
47
48
145.19
17
A
A
GLN
ALA
28
29
-148.31
17
A
A
ASN
LYS
37
38
-141.09
19
A
A
ASP
PRO
81
82
-149.17
1
A
ARG
30
0.093
SIDE CHAIN
3
A
ARG
36
0.084
SIDE CHAIN
6
A
ARG
30
0.134
SIDE CHAIN
7
A
ARG
30
0.095
SIDE CHAIN
9
A
ARG
19
0.138
SIDE CHAIN
9
A
TYR
79
0.101
SIDE CHAIN
10
A
ARG
30
0.082
SIDE CHAIN
15
A
TYR
79
0.124
SIDE CHAIN
16
A
ARG
44
0.113
SIDE CHAIN
6
-3.57
0.50
120.30
116.73
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
59
59
59
N
7
10.36
1.50
110.90
121.26
A
A
A
CA
CB
CG1
VAL
VAL
VAL
49
49
49
N
9
-3.19
0.50
120.30
117.11
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
36
36
36
N
9
-4.34
0.60
121.00
116.66
A
A
A
CB
CG
CD2
TYR
TYR
TYR
79
79
79
N
12
11.74
1.70
113.30
125.04
A
A
A
CA
CB
CG
MET
MET
MET
35
35
35
N
15
-10.85
1.60
129.70
118.85
A
A
A
CB
CG
CD2
HIS
HIS
HIS
25
25
25
N
19
-4.98
0.60
121.00
116.02
A
A
A
CB
CG
CD2
TYR
TYR
TYR
79
79
79
N
1
A
MET
35
43.87
-154.51
1
A
ARG
36
75.71
-48.44
1
A
LYS
38
47.05
-66.50
1
A
GLN
42
-65.47
4.00
1
A
SER
43
-110.21
72.13
1
A
ASP
89
-144.56
11.61
2
A
ASN
2
-143.00
13.36
2
A
VAL
4
-118.18
72.21
2
A
ALA
29
50.50
173.26
2
A
MET
35
-54.32
87.54
2
A
ARG
36
-140.53
-74.28
2
A
ASN
37
-64.24
94.37
2
A
ARG
44
-153.53
0.21
2
A
MET
61
-52.57
-70.45
2
A
LEU
71
64.95
-15.55
2
A
LYS
83
58.10
164.95
2
A
GLU
88
44.80
71.17
3
A
ASN
2
76.34
-2.51
3
A
MET
8
67.48
62.56
3
A
ALA
29
43.55
86.80
3
A
LEU
34
-140.53
-152.82
3
A
MET
35
69.49
-153.39
3
A
ASN
37
-153.24
-50.68
3
A
LYS
38
64.08
-24.16
3
A
SER
39
-76.53
-74.96
3
A
GLN
42
-62.98
4.33
3
A
ARG
44
-142.72
14.98
3
A
SER
80
-144.18
53.34
4
A
VAL
32
-170.12
137.78
4
A
ASN
37
-160.45
106.02
4
A
LYS
38
-67.37
1.60
4
A
SER
40
-131.13
-40.36
4
A
SER
43
67.05
-152.81
4
A
ARG
44
75.37
-3.14
4
A
SER
80
-146.90
-159.19
4
A
LYS
83
54.32
155.15
5
A
ALA
29
45.22
92.21
5
A
MET
35
-46.18
77.17
5
A
ARG
36
-131.18
-67.04
5
A
GLN
42
-69.58
14.45
5
A
ARG
44
-151.53
13.34
5
A
LYS
83
60.99
163.35
6
A
ARG
36
173.87
-56.79
6
A
LYS
38
44.39
-66.82
6
A
GLN
42
-64.69
14.28
6
A
LEU
71
56.18
17.18
6
A
ASP
81
-49.87
154.73
6
A
LYS
83
55.77
165.79
6
A
ASN
87
-56.49
-162.02
7
A
MET
35
-55.25
16.96
7
A
SER
40
-163.30
-25.26
7
A
ARG
44
-148.46
-5.09
7
A
LYS
83
54.13
165.84
8
A
ALA
29
47.07
119.38
8
A
LEU
34
-64.43
-153.63
8
A
MET
35
-94.49
-70.51
8
A
SER
43
77.64
97.01
8
A
HIS
66
53.53
15.78
9
A
MET
8
74.72
53.38
9
A
ALA
29
61.56
122.44
9
A
MET
35
-59.40
14.58
9
A
ASN
37
-162.58
-47.01
9
A
LYS
38
51.08
7.35
9
A
SER
43
174.76
141.25
9
A
ARG
44
173.86
0.37
9
A
LEU
54
65.23
-32.49
9
A
HIS
66
57.24
16.00
9
A
ASN
87
-58.24
-176.25
10
A
ALA
29
44.60
94.44
10
A
ARG
44
-130.66
-71.36
10
A
LEU
54
-58.78
-9.41
10
A
LYS
83
59.11
166.17
11
A
ASN
2
-144.90
26.72
11
A
ALA
29
63.53
110.79
11
A
LEU
34
-129.71
-154.48
11
A
MET
35
-68.94
69.25
11
A
ARG
36
-143.63
-35.12
11
A
LYS
38
47.06
-7.74
11
A
ARG
44
-153.52
9.69
11
A
LYS
83
54.27
163.91
12
A
LEU
34
-111.50
-153.09
12
A
MET
35
55.13
-176.49
12
A
ASN
37
-161.12
98.03
12
A
SER
43
75.33
88.45
12
A
ASN
87
-64.68
-154.38
13
A
ALA
29
55.46
99.75
13
A
LEU
34
-71.70
-154.17
13
A
ARG
36
68.84
-5.04
13
A
LYS
38
47.29
-15.79
13
A
SER
40
-146.92
-7.45
13
A
GLN
42
-60.27
-173.30
13
A
SER
43
77.03
137.31
13
A
ARG
44
-167.98
15.98
13
A
LYS
83
54.79
164.47
14
A
MET
8
75.67
38.70
14
A
ALA
29
43.49
94.60
14
A
ASN
37
-166.45
87.12
14
A
SER
40
-152.64
-14.19
14
A
SER
43
178.49
145.15
14
A
ARG
44
174.88
-42.50
14
A
HIS
66
58.68
13.17
14
A
TYR
79
-66.21
92.11
15
A
ASN
2
-151.53
12.85
15
A
ALA
29
43.54
74.83
15
A
ARG
36
66.02
135.78
15
A
ASN
37
-165.97
-42.76
15
A
LYS
38
55.42
-20.36
15
A
ARG
44
174.73
-35.01
15
A
SER
80
-67.59
77.59
15
A
LYS
83
54.43
165.95
16
A
MET
8
75.34
45.45
16
A
ARG
33
-156.40
83.71
16
A
LEU
34
-131.71
-153.39
16
A
MET
35
57.05
-86.50
16
A
ARG
36
172.90
155.62
16
A
ASN
37
-164.84
-2.20
16
A
LYS
38
45.18
-13.39
16
A
GLN
42
-65.63
8.15
16
A
LEU
71
57.50
14.61
16
A
SER
80
-101.26
50.27
16
A
LYS
85
-106.97
44.30
17
A
PRO
10
-68.04
-178.81
17
A
ALA
29
45.15
104.13
17
A
MET
35
-169.11
-87.05
17
A
ARG
36
-153.92
-55.58
17
A
ASN
37
59.71
-33.08
17
A
LYS
38
46.22
-70.40
17
A
GLN
42
-78.73
29.80
17
A
SER
43
-163.76
9.71
17
A
SER
80
-90.96
51.63
17
A
LYS
83
54.56
155.77
17
A
PRO
84
-59.49
-162.16
18
A
ASN
2
-171.07
-22.82
18
A
MET
8
72.31
59.52
18
A
MET
35
-49.26
178.68
18
A
ARG
36
77.18
-12.67
18
A
LYS
38
65.11
-48.26
18
A
GLN
42
-59.04
-162.76
18
A
SER
43
75.95
50.16
18
A
SER
80
-153.82
46.33
18
A
LYS
83
56.91
165.56
18
A
PRO
84
-67.31
98.89
18
A
TRP
90
-142.77
10.32
19
A
ASN
2
72.96
-1.46
19
A
ALA
29
44.21
90.97
19
A
MET
35
-58.58
13.16
19
A
ASN
37
-177.11
118.56
19
A
SER
40
-130.65
-38.68
19
A
GLN
42
-44.61
105.76
19
A
ARG
44
174.34
2.54
19
A
LEU
54
63.01
-27.73
19
A
LEU
71
68.21
-13.80
19
A
SER
80
-97.01
46.84
19
A
LYS
83
54.24
165.51
lowest energy, model 1
NMR structure of the N-terminal RNA Binding domain 1 (RRM1) of the protein RBM10 from Homo sapiens
1
N
N
A
THR
14
A
THR
14
HELX_P
A
GLY
26
A
GLY
26
1
1
13
A
HIS
53
A
HIS
53
HELX_P
A
ALA
63
A
ALA
63
1
2
11
RNA BINDING PROTEIN
RNA binding, RNA BINDING PROTEIN, Structural Genomics, PSI-Biology, Joint Center for Structural Genomics, JCSG, Partnership for T-Cell Biology, TCELL
RBM10_HUMAN
UNP
1
128
P98175
SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS
DPKPKINEDWL
128
218
2LXI
1
91
P98175
A
1
1
91
4
anti-parallel
anti-parallel
anti-parallel
A
PHE
46
A
PHE
46
A
GLU
50
A
GLU
50
A
ILE
3
A
ILE
3
A
ARG
7
A
ARG
7
A
GLN
73
A
GLN
73
A
HIS
78
A
HIS
78
A
SER
67
A
SER
67
A
ILE
70
A
ILE
70
1
P 1