1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Tommos, C.
Valentine, K.G.
Martinez-Rivera, M.C.
Liang, L.
Moorman, V.R.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H6 O S
126.176
2-MERCAPTOPHENOL
2-HYDROXYTHIOPHENOL
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Biochemistry
BICHAW
0033
0006-2960
52
1409
1418
10.1021/bi301613p
23373469
Reversible phenol oxidation and reduction in the structurally well-defined 2-Mercaptophenol-alpha(3)C protein.
2013
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
109
9739
9743
10.1073/pnas.1112057109
22675121
Reversible voltammograms and a Pourbaix diagram for a protein tyrosine radical.
2012
US
J.Am.Chem.Soc.
JACSAT
0004
0002-7863
133
17786
17795
10.1021/ja206876h
22011192
Electrochemical and structural properties of a protein system designed to generate tyrosine Pourbaix diagrams.
2011
US
Biochemistry
BICHAW
0033
0006-2960
44
11891
11902
10.1021/bi050901q
16128591
Moving a phenol hydroxyl group from the surface to the interior of a protein: effects on the phenol potential and pK(A).
2005
US
J.Am.Chem.Soc.
JACSAT
0004
0002-7863
124
10952
10953
12224922
Structure of a de novo designed protein model of radical enzymes.
2002
US
Biochemistry
BICHAW
0033
0006-2960
38
9495
9507
10.1021/bi990609g
10413527
De novo proteins as models of radical enzymes.
1999
US
Biochemistry
BICHAW
0033
0006-2960
38
9495
9507
10413527
De novo proteins as models of radical enzymes
1999
10.2210/pdb2lxy/pdb
pdb_00002lxy
7479.832
2-mercaptophenol-alpha3C
1
syn
polymer
126.176
2-MERCAPTOPHENOL
1
syn
non-polymer
no
no
GSRVKALEEKVKALEEKVKALGGGGRIEELKKKCEELKKKIEELGGGGEVKKVEEEVKKLEEEIKKL
GSRVKALEEKVKALEEKVKALGGGGRIEELKKKCEELKKKIEELGGGGEVKKVEEEVKKLEEEIKKL
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
562
Escherichia coli
mPET32
database_2
pdbx_database_status
pdbx_nmr_software
struct_conn
struct_site
repository
Initial release
Database references
Data collection
Database references
Derived calculations
Other
1
0
2013-02-27
1
1
2013-06-19
1
2
2023-06-14
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_nmr_data
_pdbx_nmr_software.name
_struct_conn.pdbx_leaving_atom_flag
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
BMRB
Y
RCSB
2012-09-06
REL
REL
REL
REL
HTS
2-MERCAPTOPHENOL
structures with the lowest energy
1000
32
2D 1H-15N HSQC
2D 1H-13C HSQC
3D HNCO
3D HNHA
3D CBCA(CO)NH
3D HNCACB
3D H(CC)(CO)NH TOCSY
3D CC(CO)NH TOCSY
3D HCCH-TOCSY
3D 1H-13C NOESY
3D 1H-15N NOESY
2D 1H-1H NOESY
4D 1H-13C NOESY
2D 1H-13C HSQC
0.8
mM
[U-100% 13C; U-100% 15N]
30
mM
[U-100% 2H]
30
mM
0.25
mM
0.8
mM
[U-100% 13C; U-100% 15N]
30
mM
[U-100% 2H]
30
mM
0.25
mM
0.8
mM
[U-10% 13C; U-100% 15N]
30
mM
[U-100% 2H]
30
mM
0.25
mM
0.8
mM
30
mM
[U-100% 2H]
30
mM
0.25
mM
60
5.5
ambient
303
K
simulated annealing
1
lowest energy
0.8 mM [U-100% 13C; U-100% 15N] 2-mercaptophenol-alpha3C, 30 mM [U-100% 2H] sodium acetate, 30 mM potassium chloride, 0.25 mM DSS, 90% H2O/10% D2O
90% H2O/10% D2O
0.8 mM [U-100% 13C; U-100% 15N] 2-mercaptophenol-alpha3C, 30 mM [U-100% 2H] sodium acetate, 30 mM potassium chloride, 0.25 mM DSS, 99.99% D2O
99.99% D2O
0.8 mM [U-10% 13C; U-100% 15N] 2-mercaptophenol-alpha3C, 30 mM [U-100% 2H] sodium acetate, 30 mM potassium chloride, 0.25 mM DSS, 99.99% D2O
99.99% D2O
0.8 mM 2-mercaptophenol-alpha3C, 30 mM [U-100% 2H] sodium acetate, 30 mM potassium chloride, 0.25 mM DSS, 99.99% D2O
99.99% D2O
Bruker Biospin
collection
TopSpin
Accelrys Software Inc.
processing
Felix
Goddard
chemical shift assignment
Sparky
Goddard
data analysis
Sparky
Goddard
peak picking
Sparky
Goddard
noe integration
Sparky
Cornilescu, Delaglio and Bax
secondary structure analysis
TALOS
Brunger, Adams, Clore, Gros, Nilges and Read
refinement
CNS
Brunger, Adams, Clore, Gros, Nilges and Read
structure calculation
CNS
750
Varian
INOVA
Varian INOVA
HTS
68
2
HTS
HTS
101
A
GLY
1
n
1
GLY
1
A
SER
2
n
2
SER
2
A
ARG
3
n
3
ARG
3
A
VAL
4
n
4
VAL
4
A
LYS
5
n
5
LYS
5
A
ALA
6
n
6
ALA
6
A
LEU
7
n
7
LEU
7
A
GLU
8
n
8
GLU
8
A
GLU
9
n
9
GLU
9
A
LYS
10
n
10
LYS
10
A
VAL
11
n
11
VAL
11
A
LYS
12
n
12
LYS
12
A
ALA
13
n
13
ALA
13
A
LEU
14
n
14
LEU
14
A
GLU
15
n
15
GLU
15
A
GLU
16
n
16
GLU
16
A
LYS
17
n
17
LYS
17
A
VAL
18
n
18
VAL
18
A
LYS
19
n
19
LYS
19
A
ALA
20
n
20
ALA
20
A
LEU
21
n
21
LEU
21
A
GLY
22
n
22
GLY
22
A
GLY
23
n
23
GLY
23
A
GLY
24
n
24
GLY
24
A
GLY
25
n
25
GLY
25
A
ARG
26
n
26
ARG
26
A
ILE
27
n
27
ILE
27
A
GLU
28
n
28
GLU
28
A
GLU
29
n
29
GLU
29
A
LEU
30
n
30
LEU
30
A
LYS
31
n
31
LYS
31
A
LYS
32
n
32
LYS
32
A
LYS
33
n
33
LYS
33
A
CYS
34
n
34
CYS
34
A
GLU
35
n
35
GLU
35
A
GLU
36
n
36
GLU
36
A
LEU
37
n
37
LEU
37
A
LYS
38
n
38
LYS
38
A
LYS
39
n
39
LYS
39
A
LYS
40
n
40
LYS
40
A
ILE
41
n
41
ILE
41
A
GLU
42
n
42
GLU
42
A
GLU
43
n
43
GLU
43
A
LEU
44
n
44
LEU
44
A
GLY
45
n
45
GLY
45
A
GLY
46
n
46
GLY
46
A
GLY
47
n
47
GLY
47
A
GLY
48
n
48
GLY
48
A
GLU
49
n
49
GLU
49
A
VAL
50
n
50
VAL
50
A
LYS
51
n
51
LYS
51
A
LYS
52
n
52
LYS
52
A
VAL
53
n
53
VAL
53
A
GLU
54
n
54
GLU
54
A
GLU
55
n
55
GLU
55
A
GLU
56
n
56
GLU
56
A
VAL
57
n
57
VAL
57
A
LYS
58
n
58
LYS
58
A
LYS
59
n
59
LYS
59
A
LEU
60
n
60
LEU
60
A
GLU
61
n
61
GLU
61
A
GLU
62
n
62
GLU
62
A
GLU
63
n
63
GLU
63
A
ILE
64
n
64
ILE
64
A
LYS
65
n
65
LYS
65
A
LYS
66
n
66
LYS
66
A
LEU
67
n
67
LEU
67
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
SER
2
-149.30
-47.07
1
A
ARG
3
-144.80
-72.56
1
A
LEU
21
-78.84
-156.59
1
A
LEU
44
-55.31
170.56
1
A
LYS
66
-106.99
-68.10
2
A
ARG
3
-176.49
-39.98
3
A
ARG
3
-172.12
-42.10
3
A
LEU
44
-59.95
170.84
4
A
LEU
21
-72.34
-70.06
4
A
LEU
44
-58.66
173.23
6
A
ARG
3
-176.50
-40.40
6
A
LEU
44
-60.18
-175.32
6
A
LYS
66
-95.60
-67.36
8
A
ARG
3
-176.23
-60.31
8
A
LYS
66
-99.99
-67.18
9
A
SER
2
-145.86
-47.48
9
A
ARG
3
-161.79
-44.57
10
A
ARG
3
-175.96
-40.94
10
A
LEU
44
-54.08
179.61
12
A
ARG
3
-122.71
-55.82
15
A
ARG
3
-139.05
-50.74
15
A
LEU
44
-57.94
-176.52
16
A
ARG
3
-138.14
-64.09
16
A
LEU
21
-78.63
-157.55
16
A
LEU
44
-57.46
-175.17
17
A
ARG
3
-130.03
-66.89
18
A
SER
2
60.35
-176.76
18
A
ARG
3
-133.95
-63.04
19
A
SER
2
-152.05
31.18
19
A
ARG
3
-139.34
-75.40
19
A
LYS
66
-105.08
-69.35
21
A
ARG
3
-152.78
-67.08
22
A
LEU
44
-56.82
-178.38
23
A
ARG
3
-107.45
-61.72
23
A
LEU
44
-51.19
173.40
24
A
SER
2
60.17
88.69
24
A
ARG
3
-127.30
-75.47
25
A
ARG
3
-149.76
-55.69
26
A
ARG
3
-139.67
-58.97
27
A
SER
2
-157.88
32.71
27
A
ARG
3
-142.30
-56.01
28
A
LEU
21
-73.21
-159.69
30
A
LEU
21
-73.19
-157.49
31
A
SER
2
-128.80
-64.67
31
A
ARG
3
-163.86
-65.19
31
A
LYS
66
-93.91
-66.21
32
A
ARG
3
-101.07
-60.39
32
A
LEU
44
-57.66
-176.75
lowest energy, model1
NMR structure of 2-MERCAPTOPHENOL-ALPHA3C
1
N
N
2
N
N
A
ARG
3
A
ARG
3
HELX_P
A
LYS
19
A
LYS
19
1
1
17
A
GLY
25
A
GLY
25
HELX_P
A
LEU
44
A
LEU
44
1
2
20
A
GLU
49
A
GLU
49
HELX_P
A
LYS
65
A
LYS
65
1
3
17
covale
2.030
none
A
CYS
34
A
SG
CYS
34
1_555
A
HTS
101
B
S1
HTS
1_555
DE NOVO PROTEIN
de novo protein, three-helix bundle, redox protein, phenol oxidation-reduction, proton-coupled electron transfer
2LXY
PDB
1
2LXY
1
67
2LXY
1
67
2LXY
A
1
1
67
BINDING SITE FOR RESIDUE HTS A 101
A
HTS
101
Software
6
A
GLU
15
A
GLU
15
6
1_555
A
VAL
18
A
VAL
18
6
1_555
A
LYS
19
A
LYS
19
6
1_555
A
CYS
34
A
CYS
34
6
1_555
A
GLU
35
A
GLU
35
6
1_555
A
LYS
38
A
LYS
38
6
1_555