1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Hong, J. Feng, H. Zhou, Z. Ghirlando, R. Bai, Y. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK J.Mol.Biol. JMOBAK 0070 0022-2836 425 536 545 10.1016/j.jmb.2012.11.021 23178171 Identification of Functionally Conserved Regions in the Structure of the Chaperone/CenH3/H4 Complex. 2013 10.2210/pdb2ly8/pdb pdb_00002ly8 13717.882 Budding yeast chaperone Scm3 1 man polymer no no LISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHLVPRGSKRISGLIYEEVRAVLKSF LESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTLYGFGG LISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHLVPRGSKRISGLIYEEVRAVLKSF LESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTLYGFGG A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n ATCC 204508 / S288c sample Cse4p 4932 Saccharomyces cerevisiae 511693 Escherichia coli BL21-CodonPlus-RIPL This is a structure of re-engineering single chain of Cse4-LVPRGS-H4 database_2 pdbx_database_status pdbx_nmr_software pdbx_nmr_spectrometer repository Initial release Database references Database references Data collection Database references Other 1 0 2012-12-12 1 1 2013-01-30 1 2 2013-02-20 1 3 2023-06-14 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.status_code_nmr_data _pdbx_nmr_software.name _pdbx_nmr_spectrometer.model BMRB Y RCSB 2012-09-13 REL REL REL REL 3382 912 466 1151 853 85 85 structures with the least restraint violations 30 10 2D 1H-15N HSQC 2D 1H-1H NOESY 3D CBCA(CO)NH 3D HNCACB 3D HNCO 3D HNCA 3D HN(CO)CA 3D HBHA(CO)NH 3D HCCH-TOCSY 3D 1H-15N NOESY 3D 1H-13C NOESY 2D 1H-1H NOESY 3D H(CCO)NH 0.8 mM [U-100% 15N] 0.8 mM [U-100% 13C; U-100% 15N] 0.8 mM [U-13C; U-15N; U-2H] 0.8 mM [U-100% 13C; U-100% 15N] 0.8 mM 5.4 ambient 308.1 K DGSA-distance geometry simulated annealing 1 closest to the average 0.8 mM [U-100% 15N] sC4, 0.8 mM [U-100% 13C; U-100% 15N] sC4, 0.8 mM [U-13C; U-15N; U-2H] sC4, 90% H2O/10% D2O 90% H2O/10% D2O 0.8 mM [U-100% 13C; U-100% 15N] sC4, 100% D2O 100% D2O 0.8 mM sC4, 100% D2O 100% D2O Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax processing NMRPipe updated Johnson, One Moon Scientific chemical shift assignment NMRView updated Schwieters, Kuszewski, Tjandra and Clore structure solution X-PLOR NIH updated Cornilescu, Delaglio and Bax data analysis NMRDraw Laskowski and MacArthur structure solution ProcheckNMR updated Koradi, Billeter and Wuthrich structure solution MOLMOL Schwieters, Kuszewski, Tjandra and Clore refinement X-PLOR NIH 500 Bruker AVANCE Bruker Avance 700 Bruker AVANCE Bruker Avance 900 Bruker AVANCE Bruker Avance LEU 1 n 1 LEU 1 A ILE 2 n 2 ILE 2 A SER 3 n 3 SER 3 A LYS 4 n 4 LYS 4 A ILE 5 n 5 ILE 5 A PRO 6 n 6 PRO 6 A PHE 7 n 7 PHE 7 A ALA 8 n 8 ALA 8 A ARG 9 n 9 ARG 9 A LEU 10 n 10 LEU 10 A VAL 11 n 11 VAL 11 A LYS 12 n 12 LYS 12 A GLU 13 n 13 GLU 13 A VAL 14 n 14 VAL 14 A THR 15 n 15 THR 15 A ASP 16 n 16 ASP 16 A GLU 17 n 17 GLU 17 A PHE 18 n 18 PHE 18 A THR 19 n 19 THR 19 A THR 20 n 20 THR 20 A LYS 21 n 21 LYS 21 A ASP 22 n 22 ASP 22 A GLN 23 n 23 GLN 23 A ASP 24 n 24 ASP 24 A LEU 25 n 25 LEU 25 A ARG 26 n 26 ARG 26 A TRP 27 n 27 TRP 27 A GLN 28 n 28 GLN 28 A SER 29 n 29 SER 29 A MET 30 n 30 MET 30 A ALA 31 n 31 ALA 31 A ILE 32 n 32 ILE 32 A MET 33 n 33 MET 33 A ALA 34 n 34 ALA 34 A LEU 35 n 35 LEU 35 A GLN 36 n 36 GLN 36 A GLU 37 n 37 GLU 37 A ALA 38 n 38 ALA 38 A SER 39 n 39 SER 39 A GLU 40 n 40 GLU 40 A ALA 41 n 41 ALA 41 A TYR 42 n 42 TYR 42 A LEU 43 n 43 LEU 43 A VAL 44 n 44 VAL 44 A GLY 45 n 45 GLY 45 A LEU 46 n 46 LEU 46 A LEU 47 n 47 LEU 47 A GLU 48 n 48 GLU 48 A HIS 49 n 49 HIS 49 A THR 50 n 50 THR 50 A ASN 51 n 51 ASN 51 A LEU 52 n 52 LEU 52 A LEU 53 n 53 LEU 53 A ALA 54 n 54 ALA 54 A LEU 55 n 55 LEU 55 A HIS 56 n 56 HIS 56 A LEU 57 n 57 LEU 57 A VAL 58 n 58 VAL 58 A PRO 59 n 59 PRO 59 A ARG 60 n 60 ARG 60 A GLY 61 n 61 GLY 61 A SER 62 n 62 SER 62 A LYS 63 n 63 LYS 63 A ARG 64 n 64 ARG 64 A ILE 65 n 65 ILE 65 A SER 66 n 66 SER 66 A GLY 67 n 67 GLY 67 A LEU 68 n 68 LEU 68 A ILE 69 n 69 ILE 69 A TYR 70 n 70 TYR 70 A GLU 71 n 71 GLU 71 A GLU 72 n 72 GLU 72 A VAL 73 n 73 VAL 73 A ARG 74 n 74 ARG 74 A ALA 75 n 75 ALA 75 A VAL 76 n 76 VAL 76 A LEU 77 n 77 LEU 77 A LYS 78 n 78 LYS 78 A SER 79 n 79 SER 79 A PHE 80 n 80 PHE 80 A LEU 81 n 81 LEU 81 A GLU 82 n 82 GLU 82 A SER 83 n 83 SER 83 A VAL 84 n 84 VAL 84 A ILE 85 n 85 ILE 85 A ARG 86 n 86 ARG 86 A ASP 87 n 87 ASP 87 A SER 88 n 88 SER 88 A VAL 89 n 89 VAL 89 A THR 90 n 90 THR 90 A TYR 91 n 91 TYR 91 A THR 92 n 92 THR 92 A GLU 93 n 93 GLU 93 A HIS 94 n 94 HIS 94 A ALA 95 n 95 ALA 95 A LYS 96 n 96 LYS 96 A ARG 97 n 97 ARG 97 A LYS 98 n 98 LYS 98 A THR 99 n 99 THR 99 A VAL 100 n 100 VAL 100 A THR 101 n 101 THR 101 A SER 102 n 102 SER 102 A LEU 103 n 103 LEU 103 A ASP 104 n 104 ASP 104 A VAL 105 n 105 VAL 105 A VAL 106 n 106 VAL 106 A TYR 107 n 107 TYR 107 A ALA 108 n 108 ALA 108 A LEU 109 n 109 LEU 109 A LYS 110 n 110 LYS 110 A ARG 111 n 111 ARG 111 A GLN 112 n 112 GLN 112 A GLY 113 n 113 GLY 113 A ARG 114 n 114 ARG 114 A THR 115 n 115 THR 115 A LEU 116 n 116 LEU 116 A TYR 117 n 117 TYR 117 A GLY 118 n 118 GLY 118 A PHE 119 n 119 PHE 119 A GLY 120 n 120 GLY 120 A GLY 121 n 121 GLY 121 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A A O H THR ARG 92 97 1.47 1 A A O H LYS GLN 21 23 1.59 2 A A H1 H LEU ILE 1 2 1.28 2 A A O H THR ARG 92 97 1.46 3 A A O H THR ARG 92 97 1.48 3 A A O H LYS GLN 21 23 1.58 4 A A O H THR ARG 92 97 1.48 4 A A O H LYS GLN 21 23 1.57 5 A A O H THR ARG 92 97 1.48 5 A A O H LYS GLN 21 23 1.56 6 A A O H THR ARG 92 97 1.48 6 A A O H LYS GLN 21 23 1.56 7 A A O H THR ARG 92 97 1.50 7 A A O H LYS GLN 21 23 1.58 8 A A O H THR ARG 92 97 1.48 9 A A O H THR ARG 92 97 1.47 9 A A O H LYS GLN 21 23 1.57 10 A A O H THR ARG 92 97 1.48 1 A THR 20 -44.57 -15.02 1 A LYS 21 -68.92 23.98 1 A ASP 22 -71.61 43.82 1 A ASP 24 -172.08 -1.39 1 A HIS 56 -142.01 -21.24 1 A ARG 64 -66.64 68.60 1 A SER 66 -161.43 72.64 1 A LEU 68 47.99 106.31 1 A LYS 96 32.49 35.27 1 A THR 115 73.48 -22.63 1 A LEU 116 47.44 23.80 1 A TYR 117 50.56 12.75 2 A THR 20 -44.11 -15.61 2 A LYS 21 -69.33 25.35 2 A ASP 22 -72.79 43.62 2 A THR 50 -94.69 -145.35 2 A ASN 51 62.11 -4.46 2 A SER 66 77.33 -23.34 2 A LYS 96 35.58 37.82 3 A LYS 4 57.43 117.50 3 A THR 20 -44.73 -14.64 3 A LYS 21 -66.83 23.99 3 A ASP 22 -69.45 39.31 3 A ASP 24 -172.81 -0.13 3 A ASN 51 -178.31 -26.43 3 A HIS 56 -131.78 -30.31 3 A ARG 64 56.90 -4.33 3 A LYS 96 37.40 37.05 3 A THR 115 83.77 -27.97 3 A LEU 116 54.97 114.46 4 A LYS 4 44.93 -131.02 4 A THR 20 -44.99 -15.34 4 A LYS 21 -70.77 23.73 4 A ASP 22 -71.47 43.40 4 A ASP 24 -172.81 -6.52 4 A THR 50 -104.11 -165.80 4 A ASN 51 64.54 -28.73 4 A ARG 60 -111.28 57.53 4 A LYS 63 -178.47 -77.54 4 A LYS 96 33.59 42.41 4 A TYR 117 -93.58 47.20 5 A LYS 4 65.52 -73.88 5 A THR 20 -44.81 -14.79 5 A LYS 21 -68.54 24.36 5 A ASP 22 -71.22 43.79 5 A ASP 24 -170.98 -2.49 5 A THR 50 -51.99 97.37 5 A HIS 56 -172.87 13.42 5 A ARG 60 -125.87 -56.41 5 A LYS 96 39.18 33.20 6 A LYS 4 80.17 -62.71 6 A ILE 5 28.36 58.39 6 A THR 20 -44.97 -14.51 6 A LYS 21 -66.89 24.02 6 A ASP 22 -71.13 43.43 6 A ASP 24 -172.86 -1.25 6 A THR 50 -64.48 68.56 6 A ASN 51 -176.12 -58.19 6 A LEU 53 -46.58 -14.88 6 A ILE 65 -135.85 -57.70 6 A LYS 96 38.35 34.38 6 A THR 115 36.01 79.31 6 A TYR 117 71.55 36.34 7 A THR 20 -44.91 -14.80 7 A LYS 21 -69.03 23.87 7 A ASP 22 -71.81 43.86 7 A ASP 24 -171.63 0.46 7 A LYS 96 39.17 33.31 8 A LYS 4 33.37 70.24 8 A ILE 5 45.67 73.60 8 A THR 20 -45.43 -14.88 8 A LYS 21 -70.26 21.71 8 A ASP 22 -70.37 39.54 8 A ASP 24 -173.86 -0.71 8 A LEU 55 -79.20 20.36 8 A LYS 63 -139.65 -70.19 8 A ILE 65 -143.32 48.05 8 A LYS 96 34.73 43.48 8 A ARG 114 -80.67 -72.70 8 A THR 115 30.80 75.33 9 A THR 20 -45.82 -14.62 9 A LYS 21 -70.05 24.12 9 A ASP 22 -68.76 39.32 9 A ASP 24 -168.63 -5.18 9 A THR 50 49.88 -81.67 9 A LEU 52 -63.66 10.61 9 A LEU 53 -56.34 -9.15 9 A SER 62 53.85 76.37 9 A ARG 64 46.11 14.61 9 A LYS 96 37.12 33.14 10 A ILE 5 39.19 70.49 10 A THR 20 -44.61 -15.85 10 A LYS 21 -68.70 25.85 10 A ASP 22 -74.20 48.13 10 A ASP 24 -150.17 1.37 10 A LEU 55 -72.82 20.47 10 A HIS 56 82.78 37.06 10 A ARG 64 67.92 -36.49 10 A ILE 65 67.95 -19.67 10 A SER 66 56.26 7.26 10 A LYS 96 33.44 41.82 10 A THR 115 -162.28 100.37 closest to the average, model 1 The budding yeast chaperone Scm3 recognizes the partially unfolded dimer of the centromere-specific Cse4/H4 histone variant 1 N N A ILE 5 A ILE 5 HELX_P A THR 19 A THR 19 1 1 15 A GLN 28 A GLN 28 HELX_P A ALA 54 A ALA 54 1 2 27 A LEU 68 A LEU 68 HELX_P A ALA 95 A ALA 95 1 3 28 A THR 101 A THR 101 HELX_P A GLN 112 A GLN 112 1 4 12 A ARG 114 A ARG 114 HELX_P A PHE 119 A PHE 119 5 5 6 CHAPERONE centromere protein, CenH3 variants, Partially unfolded, CHAPERONE 2LY8 PDB 1 2LY8 1 121 2LY8 1 121 2LY8 A 1 1 121