1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Hong, J.
Feng, H.
Zhou, Z.
Ghirlando, R.
Bai, Y.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
425
536
545
10.1016/j.jmb.2012.11.021
23178171
Identification of Functionally Conserved Regions in the Structure of the Chaperone/CenH3/H4 Complex.
2013
10.2210/pdb2ly8/pdb
pdb_00002ly8
13717.882
Budding yeast chaperone Scm3
1
man
polymer
no
no
LISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHLVPRGSKRISGLIYEEVRAVLKSF
LESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTLYGFGG
LISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHLVPRGSKRISGLIYEEVRAVLKSF
LESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTLYGFGG
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
ATCC 204508 / S288c
sample
Cse4p
4932
Saccharomyces cerevisiae
511693
Escherichia coli
BL21-CodonPlus-RIPL
This is a structure of re-engineering single chain of Cse4-LVPRGS-H4
database_2
pdbx_database_status
pdbx_nmr_software
pdbx_nmr_spectrometer
repository
Initial release
Database references
Database references
Data collection
Database references
Other
1
0
2012-12-12
1
1
2013-01-30
1
2
2013-02-20
1
3
2023-06-14
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_nmr_data
_pdbx_nmr_software.name
_pdbx_nmr_spectrometer.model
BMRB
Y
RCSB
2012-09-13
REL
REL
REL
REL
3382
912
466
1151
853
85
85
structures with the least restraint violations
30
10
2D 1H-15N HSQC
2D 1H-1H NOESY
3D CBCA(CO)NH
3D HNCACB
3D HNCO
3D HNCA
3D HN(CO)CA
3D HBHA(CO)NH
3D HCCH-TOCSY
3D 1H-15N NOESY
3D 1H-13C NOESY
2D 1H-1H NOESY
3D H(CCO)NH
0.8
mM
[U-100% 15N]
0.8
mM
[U-100% 13C; U-100% 15N]
0.8
mM
[U-13C; U-15N; U-2H]
0.8
mM
[U-100% 13C; U-100% 15N]
0.8
mM
5.4
ambient
308.1
K
DGSA-distance geometry simulated annealing
1
closest to the average
0.8 mM [U-100% 15N] sC4, 0.8 mM [U-100% 13C; U-100% 15N] sC4, 0.8 mM [U-13C; U-15N; U-2H] sC4, 90% H2O/10% D2O
90% H2O/10% D2O
0.8 mM [U-100% 13C; U-100% 15N] sC4, 100% D2O
100% D2O
0.8 mM sC4, 100% D2O
100% D2O
Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
processing
NMRPipe
updated
Johnson, One Moon Scientific
chemical shift assignment
NMRView
updated
Schwieters, Kuszewski, Tjandra and Clore
structure solution
X-PLOR NIH
updated
Cornilescu, Delaglio and Bax
data analysis
NMRDraw
Laskowski and MacArthur
structure solution
ProcheckNMR
updated
Koradi, Billeter and Wuthrich
structure solution
MOLMOL
Schwieters, Kuszewski, Tjandra and Clore
refinement
X-PLOR NIH
500
Bruker
AVANCE
Bruker Avance
700
Bruker
AVANCE
Bruker Avance
900
Bruker
AVANCE
Bruker Avance
LEU
1
n
1
LEU
1
A
ILE
2
n
2
ILE
2
A
SER
3
n
3
SER
3
A
LYS
4
n
4
LYS
4
A
ILE
5
n
5
ILE
5
A
PRO
6
n
6
PRO
6
A
PHE
7
n
7
PHE
7
A
ALA
8
n
8
ALA
8
A
ARG
9
n
9
ARG
9
A
LEU
10
n
10
LEU
10
A
VAL
11
n
11
VAL
11
A
LYS
12
n
12
LYS
12
A
GLU
13
n
13
GLU
13
A
VAL
14
n
14
VAL
14
A
THR
15
n
15
THR
15
A
ASP
16
n
16
ASP
16
A
GLU
17
n
17
GLU
17
A
PHE
18
n
18
PHE
18
A
THR
19
n
19
THR
19
A
THR
20
n
20
THR
20
A
LYS
21
n
21
LYS
21
A
ASP
22
n
22
ASP
22
A
GLN
23
n
23
GLN
23
A
ASP
24
n
24
ASP
24
A
LEU
25
n
25
LEU
25
A
ARG
26
n
26
ARG
26
A
TRP
27
n
27
TRP
27
A
GLN
28
n
28
GLN
28
A
SER
29
n
29
SER
29
A
MET
30
n
30
MET
30
A
ALA
31
n
31
ALA
31
A
ILE
32
n
32
ILE
32
A
MET
33
n
33
MET
33
A
ALA
34
n
34
ALA
34
A
LEU
35
n
35
LEU
35
A
GLN
36
n
36
GLN
36
A
GLU
37
n
37
GLU
37
A
ALA
38
n
38
ALA
38
A
SER
39
n
39
SER
39
A
GLU
40
n
40
GLU
40
A
ALA
41
n
41
ALA
41
A
TYR
42
n
42
TYR
42
A
LEU
43
n
43
LEU
43
A
VAL
44
n
44
VAL
44
A
GLY
45
n
45
GLY
45
A
LEU
46
n
46
LEU
46
A
LEU
47
n
47
LEU
47
A
GLU
48
n
48
GLU
48
A
HIS
49
n
49
HIS
49
A
THR
50
n
50
THR
50
A
ASN
51
n
51
ASN
51
A
LEU
52
n
52
LEU
52
A
LEU
53
n
53
LEU
53
A
ALA
54
n
54
ALA
54
A
LEU
55
n
55
LEU
55
A
HIS
56
n
56
HIS
56
A
LEU
57
n
57
LEU
57
A
VAL
58
n
58
VAL
58
A
PRO
59
n
59
PRO
59
A
ARG
60
n
60
ARG
60
A
GLY
61
n
61
GLY
61
A
SER
62
n
62
SER
62
A
LYS
63
n
63
LYS
63
A
ARG
64
n
64
ARG
64
A
ILE
65
n
65
ILE
65
A
SER
66
n
66
SER
66
A
GLY
67
n
67
GLY
67
A
LEU
68
n
68
LEU
68
A
ILE
69
n
69
ILE
69
A
TYR
70
n
70
TYR
70
A
GLU
71
n
71
GLU
71
A
GLU
72
n
72
GLU
72
A
VAL
73
n
73
VAL
73
A
ARG
74
n
74
ARG
74
A
ALA
75
n
75
ALA
75
A
VAL
76
n
76
VAL
76
A
LEU
77
n
77
LEU
77
A
LYS
78
n
78
LYS
78
A
SER
79
n
79
SER
79
A
PHE
80
n
80
PHE
80
A
LEU
81
n
81
LEU
81
A
GLU
82
n
82
GLU
82
A
SER
83
n
83
SER
83
A
VAL
84
n
84
VAL
84
A
ILE
85
n
85
ILE
85
A
ARG
86
n
86
ARG
86
A
ASP
87
n
87
ASP
87
A
SER
88
n
88
SER
88
A
VAL
89
n
89
VAL
89
A
THR
90
n
90
THR
90
A
TYR
91
n
91
TYR
91
A
THR
92
n
92
THR
92
A
GLU
93
n
93
GLU
93
A
HIS
94
n
94
HIS
94
A
ALA
95
n
95
ALA
95
A
LYS
96
n
96
LYS
96
A
ARG
97
n
97
ARG
97
A
LYS
98
n
98
LYS
98
A
THR
99
n
99
THR
99
A
VAL
100
n
100
VAL
100
A
THR
101
n
101
THR
101
A
SER
102
n
102
SER
102
A
LEU
103
n
103
LEU
103
A
ASP
104
n
104
ASP
104
A
VAL
105
n
105
VAL
105
A
VAL
106
n
106
VAL
106
A
TYR
107
n
107
TYR
107
A
ALA
108
n
108
ALA
108
A
LEU
109
n
109
LEU
109
A
LYS
110
n
110
LYS
110
A
ARG
111
n
111
ARG
111
A
GLN
112
n
112
GLN
112
A
GLY
113
n
113
GLY
113
A
ARG
114
n
114
ARG
114
A
THR
115
n
115
THR
115
A
LEU
116
n
116
LEU
116
A
TYR
117
n
117
TYR
117
A
GLY
118
n
118
GLY
118
A
PHE
119
n
119
PHE
119
A
GLY
120
n
120
GLY
120
A
GLY
121
n
121
GLY
121
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
A
O
H
THR
ARG
92
97
1.47
1
A
A
O
H
LYS
GLN
21
23
1.59
2
A
A
H1
H
LEU
ILE
1
2
1.28
2
A
A
O
H
THR
ARG
92
97
1.46
3
A
A
O
H
THR
ARG
92
97
1.48
3
A
A
O
H
LYS
GLN
21
23
1.58
4
A
A
O
H
THR
ARG
92
97
1.48
4
A
A
O
H
LYS
GLN
21
23
1.57
5
A
A
O
H
THR
ARG
92
97
1.48
5
A
A
O
H
LYS
GLN
21
23
1.56
6
A
A
O
H
THR
ARG
92
97
1.48
6
A
A
O
H
LYS
GLN
21
23
1.56
7
A
A
O
H
THR
ARG
92
97
1.50
7
A
A
O
H
LYS
GLN
21
23
1.58
8
A
A
O
H
THR
ARG
92
97
1.48
9
A
A
O
H
THR
ARG
92
97
1.47
9
A
A
O
H
LYS
GLN
21
23
1.57
10
A
A
O
H
THR
ARG
92
97
1.48
1
A
THR
20
-44.57
-15.02
1
A
LYS
21
-68.92
23.98
1
A
ASP
22
-71.61
43.82
1
A
ASP
24
-172.08
-1.39
1
A
HIS
56
-142.01
-21.24
1
A
ARG
64
-66.64
68.60
1
A
SER
66
-161.43
72.64
1
A
LEU
68
47.99
106.31
1
A
LYS
96
32.49
35.27
1
A
THR
115
73.48
-22.63
1
A
LEU
116
47.44
23.80
1
A
TYR
117
50.56
12.75
2
A
THR
20
-44.11
-15.61
2
A
LYS
21
-69.33
25.35
2
A
ASP
22
-72.79
43.62
2
A
THR
50
-94.69
-145.35
2
A
ASN
51
62.11
-4.46
2
A
SER
66
77.33
-23.34
2
A
LYS
96
35.58
37.82
3
A
LYS
4
57.43
117.50
3
A
THR
20
-44.73
-14.64
3
A
LYS
21
-66.83
23.99
3
A
ASP
22
-69.45
39.31
3
A
ASP
24
-172.81
-0.13
3
A
ASN
51
-178.31
-26.43
3
A
HIS
56
-131.78
-30.31
3
A
ARG
64
56.90
-4.33
3
A
LYS
96
37.40
37.05
3
A
THR
115
83.77
-27.97
3
A
LEU
116
54.97
114.46
4
A
LYS
4
44.93
-131.02
4
A
THR
20
-44.99
-15.34
4
A
LYS
21
-70.77
23.73
4
A
ASP
22
-71.47
43.40
4
A
ASP
24
-172.81
-6.52
4
A
THR
50
-104.11
-165.80
4
A
ASN
51
64.54
-28.73
4
A
ARG
60
-111.28
57.53
4
A
LYS
63
-178.47
-77.54
4
A
LYS
96
33.59
42.41
4
A
TYR
117
-93.58
47.20
5
A
LYS
4
65.52
-73.88
5
A
THR
20
-44.81
-14.79
5
A
LYS
21
-68.54
24.36
5
A
ASP
22
-71.22
43.79
5
A
ASP
24
-170.98
-2.49
5
A
THR
50
-51.99
97.37
5
A
HIS
56
-172.87
13.42
5
A
ARG
60
-125.87
-56.41
5
A
LYS
96
39.18
33.20
6
A
LYS
4
80.17
-62.71
6
A
ILE
5
28.36
58.39
6
A
THR
20
-44.97
-14.51
6
A
LYS
21
-66.89
24.02
6
A
ASP
22
-71.13
43.43
6
A
ASP
24
-172.86
-1.25
6
A
THR
50
-64.48
68.56
6
A
ASN
51
-176.12
-58.19
6
A
LEU
53
-46.58
-14.88
6
A
ILE
65
-135.85
-57.70
6
A
LYS
96
38.35
34.38
6
A
THR
115
36.01
79.31
6
A
TYR
117
71.55
36.34
7
A
THR
20
-44.91
-14.80
7
A
LYS
21
-69.03
23.87
7
A
ASP
22
-71.81
43.86
7
A
ASP
24
-171.63
0.46
7
A
LYS
96
39.17
33.31
8
A
LYS
4
33.37
70.24
8
A
ILE
5
45.67
73.60
8
A
THR
20
-45.43
-14.88
8
A
LYS
21
-70.26
21.71
8
A
ASP
22
-70.37
39.54
8
A
ASP
24
-173.86
-0.71
8
A
LEU
55
-79.20
20.36
8
A
LYS
63
-139.65
-70.19
8
A
ILE
65
-143.32
48.05
8
A
LYS
96
34.73
43.48
8
A
ARG
114
-80.67
-72.70
8
A
THR
115
30.80
75.33
9
A
THR
20
-45.82
-14.62
9
A
LYS
21
-70.05
24.12
9
A
ASP
22
-68.76
39.32
9
A
ASP
24
-168.63
-5.18
9
A
THR
50
49.88
-81.67
9
A
LEU
52
-63.66
10.61
9
A
LEU
53
-56.34
-9.15
9
A
SER
62
53.85
76.37
9
A
ARG
64
46.11
14.61
9
A
LYS
96
37.12
33.14
10
A
ILE
5
39.19
70.49
10
A
THR
20
-44.61
-15.85
10
A
LYS
21
-68.70
25.85
10
A
ASP
22
-74.20
48.13
10
A
ASP
24
-150.17
1.37
10
A
LEU
55
-72.82
20.47
10
A
HIS
56
82.78
37.06
10
A
ARG
64
67.92
-36.49
10
A
ILE
65
67.95
-19.67
10
A
SER
66
56.26
7.26
10
A
LYS
96
33.44
41.82
10
A
THR
115
-162.28
100.37
closest to the average, model 1
The budding yeast chaperone Scm3 recognizes the partially unfolded dimer of the centromere-specific Cse4/H4 histone variant
1
N
N
A
ILE
5
A
ILE
5
HELX_P
A
THR
19
A
THR
19
1
1
15
A
GLN
28
A
GLN
28
HELX_P
A
ALA
54
A
ALA
54
1
2
27
A
LEU
68
A
LEU
68
HELX_P
A
ALA
95
A
ALA
95
1
3
28
A
THR
101
A
THR
101
HELX_P
A
GLN
112
A
GLN
112
1
4
12
A
ARG
114
A
ARG
114
HELX_P
A
PHE
119
A
PHE
119
5
5
6
CHAPERONE
centromere protein, CenH3 variants, Partially unfolded, CHAPERONE
2LY8
PDB
1
2LY8
1
121
2LY8
1
121
2LY8
A
1
1
121