1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Wang, S.
Huang, W.
Yang, D.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
NE
J.Biomol.Nmr
JBNME9
0800
0925-2738
54
415
420
10.1007/s10858-012-9679-5
23129012
NMR structure note: repetitive domain of aciniform spidroin 1 from Nephila antipodiana
2012
10.2210/pdb2lyi/pdb
pdb_00002lyi
17079.256
PROTEIN (entity)
1
man
polymer
no
no
MHHHHHHSGSLGDQLTSTLASALTKTNTLKAVSASKPSANVAVAIVTSGLKKALGALRINAGVSSQLTSAVSQAVANVRP
GSSPAVYAKAIAAPSVQILVSSGSVNNNNAKQVASTLSENLVREMANTARRYRVNVPEASVQADVSLVTSMTSTFVISSQ
TSVQMGG
MHHHHHHSGSLGDQLTSTLASALTKTNTLKAVSASKPSANVAVAIVTSGLKKALGALRINAGVSSQLTSAVSQAVANVRP
GSSPAVYAKAIAAPSVQILVSSGSVNNNNAKQVASTLSENLVREMANTARRYRVNVPEASVQADVSLVTSMTSTFVISSQ
TSVQMGG
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
171624
Nephila antipodiana
562
Escherichia coli
pET-32a(+)(derived)
vector
database_2
pdbx_database_status
pdbx_nmr_software
pdbx_nmr_spectrometer
repository
Initial release
Data collection
Database references
Other
1
0
2013-01-16
1
1
2023-06-14
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_nmr_data
_pdbx_nmr_software.name
_pdbx_nmr_spectrometer.model
BMRB
Y
PDBJ
2012-09-18
REL
REL
REL
REL
A SEQUENCE DATABASE REFERENCE FOR THIS PROTEIN DOES NOT CURRENTLY EXIST.
target function
100
10
1
2D 1H-15N HSQC
2D 1H-13C HSQC aliphatic
2D 1H-13C HSQC aromatic
3D HNCA
3D HN(CO)CA
3D HCCH-TOCSY
4D time shared 13C/15N-edited NOESY
2
mM
[U-100% 13C; U-100% 15N]
0
6.0
ambient
298
K
simulated annealing
1
fewest violations
2mM [U-100% 13C; U-100% 15N]AcSp1-RP-1, 95%H2O/5%D2O
95% H2O/5% D2O
Guntert, Mumenthaler and Wuthrich
structure solution
CYANA
2.1
Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
processing
NMRPipe
Yu Zheng, Daiwen Yang
chemical shift assignment
NMRspy
Bruker Biospin
collection
TopSpin
refinement
CYANA
800
Bruker
AVANCE
Bruker Avance
MET
-6
n
1
MET
-6
A
HIS
-5
n
2
HIS
-5
A
HIS
-4
n
3
HIS
-4
A
HIS
-3
n
4
HIS
-3
A
HIS
-2
n
5
HIS
-2
A
HIS
-1
n
6
HIS
-1
A
HIS
0
n
7
HIS
0
A
SER
1
n
8
SER
1
A
GLY
2
n
9
GLY
2
A
SER
3
n
10
SER
3
A
LEU
4
n
11
LEU
4
A
GLY
5
n
12
GLY
5
A
ASP
6
n
13
ASP
6
A
GLN
7
n
14
GLN
7
A
LEU
8
n
15
LEU
8
A
THR
9
n
16
THR
9
A
SER
10
n
17
SER
10
A
THR
11
n
18
THR
11
A
LEU
12
n
19
LEU
12
A
ALA
13
n
20
ALA
13
A
SER
14
n
21
SER
14
A
ALA
15
n
22
ALA
15
A
LEU
16
n
23
LEU
16
A
THR
17
n
24
THR
17
A
LYS
18
n
25
LYS
18
A
THR
19
n
26
THR
19
A
ASN
20
n
27
ASN
20
A
THR
21
n
28
THR
21
A
LEU
22
n
29
LEU
22
A
LYS
23
n
30
LYS
23
A
ALA
24
n
31
ALA
24
A
VAL
25
n
32
VAL
25
A
SER
26
n
33
SER
26
A
ALA
27
n
34
ALA
27
A
SER
28
n
35
SER
28
A
LYS
29
n
36
LYS
29
A
PRO
30
n
37
PRO
30
A
SER
31
n
38
SER
31
A
ALA
32
n
39
ALA
32
A
ASN
33
n
40
ASN
33
A
VAL
34
n
41
VAL
34
A
ALA
35
n
42
ALA
35
A
VAL
36
n
43
VAL
36
A
ALA
37
n
44
ALA
37
A
ILE
38
n
45
ILE
38
A
VAL
39
n
46
VAL
39
A
THR
40
n
47
THR
40
A
SER
41
n
48
SER
41
A
GLY
42
n
49
GLY
42
A
LEU
43
n
50
LEU
43
A
LYS
44
n
51
LYS
44
A
LYS
45
n
52
LYS
45
A
ALA
46
n
53
ALA
46
A
LEU
47
n
54
LEU
47
A
GLY
48
n
55
GLY
48
A
ALA
49
n
56
ALA
49
A
LEU
50
n
57
LEU
50
A
ARG
51
n
58
ARG
51
A
ILE
52
n
59
ILE
52
A
ASN
53
n
60
ASN
53
A
ALA
54
n
61
ALA
54
A
GLY
55
n
62
GLY
55
A
VAL
56
n
63
VAL
56
A
SER
57
n
64
SER
57
A
SER
58
n
65
SER
58
A
GLN
59
n
66
GLN
59
A
LEU
60
n
67
LEU
60
A
THR
61
n
68
THR
61
A
SER
62
n
69
SER
62
A
ALA
63
n
70
ALA
63
A
VAL
64
n
71
VAL
64
A
SER
65
n
72
SER
65
A
GLN
66
n
73
GLN
66
A
ALA
67
n
74
ALA
67
A
VAL
68
n
75
VAL
68
A
ALA
69
n
76
ALA
69
A
ASN
70
n
77
ASN
70
A
VAL
71
n
78
VAL
71
A
ARG
72
n
79
ARG
72
A
PRO
73
n
80
PRO
73
A
GLY
74
n
81
GLY
74
A
SER
75
n
82
SER
75
A
SER
76
n
83
SER
76
A
PRO
77
n
84
PRO
77
A
ALA
78
n
85
ALA
78
A
VAL
79
n
86
VAL
79
A
TYR
80
n
87
TYR
80
A
ALA
81
n
88
ALA
81
A
LYS
82
n
89
LYS
82
A
ALA
83
n
90
ALA
83
A
ILE
84
n
91
ILE
84
A
ALA
85
n
92
ALA
85
A
ALA
86
n
93
ALA
86
A
PRO
87
n
94
PRO
87
A
SER
88
n
95
SER
88
A
VAL
89
n
96
VAL
89
A
GLN
90
n
97
GLN
90
A
ILE
91
n
98
ILE
91
A
LEU
92
n
99
LEU
92
A
VAL
93
n
100
VAL
93
A
SER
94
n
101
SER
94
A
SER
95
n
102
SER
95
A
GLY
96
n
103
GLY
96
A
SER
97
n
104
SER
97
A
VAL
98
n
105
VAL
98
A
ASN
99
n
106
ASN
99
A
ASN
100
n
107
ASN
100
A
ASN
101
n
108
ASN
101
A
ASN
102
n
109
ASN
102
A
ALA
103
n
110
ALA
103
A
LYS
104
n
111
LYS
104
A
GLN
105
n
112
GLN
105
A
VAL
106
n
113
VAL
106
A
ALA
107
n
114
ALA
107
A
SER
108
n
115
SER
108
A
THR
109
n
116
THR
109
A
LEU
110
n
117
LEU
110
A
SER
111
n
118
SER
111
A
GLU
112
n
119
GLU
112
A
ASN
113
n
120
ASN
113
A
LEU
114
n
121
LEU
114
A
VAL
115
n
122
VAL
115
A
ARG
116
n
123
ARG
116
A
GLU
117
n
124
GLU
117
A
MET
118
n
125
MET
118
A
ALA
119
n
126
ALA
119
A
ASN
120
n
127
ASN
120
A
THR
121
n
128
THR
121
A
ALA
122
n
129
ALA
122
A
ARG
123
n
130
ARG
123
A
ARG
124
n
131
ARG
124
A
TYR
125
n
132
TYR
125
A
ARG
126
n
133
ARG
126
A
VAL
127
n
134
VAL
127
A
ASN
128
n
135
ASN
128
A
VAL
129
n
136
VAL
129
A
PRO
130
n
137
PRO
130
A
GLU
131
n
138
GLU
131
A
ALA
132
n
139
ALA
132
A
SER
133
n
140
SER
133
A
VAL
134
n
141
VAL
134
A
GLN
135
n
142
GLN
135
A
ALA
136
n
143
ALA
136
A
ASP
137
n
144
ASP
137
A
VAL
138
n
145
VAL
138
A
SER
139
n
146
SER
139
A
LEU
140
n
147
LEU
140
A
VAL
141
n
148
VAL
141
A
THR
142
n
149
THR
142
A
SER
143
n
150
SER
143
A
MET
144
n
151
MET
144
A
THR
145
n
152
THR
145
A
SER
146
n
153
SER
146
A
THR
147
n
154
THR
147
A
PHE
148
n
155
PHE
148
A
VAL
149
n
156
VAL
149
A
ILE
150
n
157
ILE
150
A
SER
151
n
158
SER
151
A
SER
152
n
159
SER
152
A
GLN
153
n
160
GLN
153
A
THR
154
n
161
THR
154
A
SER
155
n
162
SER
155
A
VAL
156
n
163
VAL
156
A
GLN
157
n
164
GLN
157
A
MET
158
n
165
MET
158
A
GLY
159
n
166
GLY
159
A
GLY
160
n
167
GLY
160
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
HIS
-2
-92.02
-73.22
1
A
HIS
-1
-177.36
126.76
1
A
HIS
0
-177.69
-64.42
1
A
PRO
30
-69.71
-89.09
1
A
SER
31
176.22
152.77
1
A
ARG
72
63.28
158.24
1
A
ASN
101
-178.84
-32.17
1
A
MET
158
62.86
74.59
2
A
HIS
-3
63.07
178.20
2
A
HIS
-1
-179.19
-179.35
2
A
HIS
0
-139.29
-49.93
2
A
SER
3
60.39
100.26
2
A
PRO
30
-69.77
-91.15
2
A
SER
31
173.52
160.05
2
A
ARG
72
63.48
157.89
2
A
ASN
101
-179.75
-32.25
2
A
ARG
126
70.08
36.01
2
A
ASN
128
59.62
99.57
2
A
THR
147
-107.19
55.46
2
A
GLN
153
62.65
-170.00
2
A
MET
158
61.92
98.59
3
A
HIS
-5
-53.25
170.98
3
A
HIS
-4
-120.42
-74.73
3
A
HIS
-3
-177.55
133.68
3
A
HIS
-2
-178.91
94.07
3
A
HIS
0
-63.33
-171.38
3
A
SER
1
51.76
-169.63
3
A
SER
3
52.20
90.27
3
A
PRO
30
-69.73
-88.97
3
A
SER
31
177.08
152.56
3
A
ARG
72
62.59
160.58
3
A
ASN
101
-174.73
-33.58
3
A
VAL
127
-104.10
53.38
3
A
THR
147
-110.30
51.23
3
A
SER
151
179.39
-75.13
3
A
GLN
153
-179.13
-69.54
3
A
SER
155
-177.88
146.56
4
A
HIS
-5
-174.76
124.67
4
A
HIS
-4
-178.57
-40.55
4
A
HIS
-3
-62.91
-169.96
4
A
HIS
-2
62.88
93.14
4
A
HIS
0
-172.90
-172.93
4
A
SER
3
63.63
107.04
4
A
PRO
30
-69.74
-91.04
4
A
SER
31
173.94
159.64
4
A
ARG
72
63.24
158.29
4
A
ASN
101
-179.63
-33.26
4
A
ASN
128
60.34
101.37
4
A
THR
147
-110.45
53.10
4
A
GLN
153
58.42
-173.62
4
A
THR
154
-58.64
98.08
4
A
MET
158
-153.86
34.52
5
A
HIS
-4
62.39
102.44
5
A
HIS
-2
-104.58
-60.98
5
A
HIS
-1
61.38
62.26
5
A
HIS
0
-173.73
-66.03
5
A
PRO
30
-69.80
-89.17
5
A
SER
31
176.39
152.64
5
A
ILE
52
-59.46
-80.85
5
A
ASN
53
171.52
131.80
5
A
ARG
72
63.33
157.72
5
A
ASN
101
-174.80
-34.39
5
A
ASN
128
59.99
100.97
5
A
THR
147
-106.63
53.98
5
A
GLN
153
63.08
179.05
5
A
SER
155
-146.62
27.17
6
A
HIS
-5
-164.66
-56.87
6
A
HIS
-1
54.58
75.50
6
A
HIS
0
-109.93
-74.68
6
A
SER
3
63.34
105.66
6
A
PRO
30
-69.71
-90.87
6
A
SER
31
174.26
159.02
6
A
ARG
72
63.38
157.89
6
A
ASN
101
-170.52
-35.29
6
A
ARG
126
70.20
37.81
6
A
ASN
128
58.84
98.12
6
A
THR
147
-108.56
52.24
6
A
THR
154
62.50
88.29
6
A
SER
155
-158.60
66.55
6
A
GLN
157
-123.33
-73.98
7
A
HIS
-5
63.23
105.01
7
A
HIS
-3
62.86
104.06
7
A
HIS
-1
-166.52
-72.21
7
A
SER
1
63.17
163.34
7
A
PRO
30
-69.73
-88.81
7
A
SER
31
177.66
152.41
7
A
ARG
72
64.70
136.47
7
A
ASN
101
-174.86
-32.81
7
A
VAL
127
-106.45
52.88
7
A
THR
147
-101.10
43.81
7
A
SER
151
66.62
81.95
7
A
GLN
153
61.65
100.56
7
A
THR
154
64.00
106.91
7
A
SER
155
-170.22
39.54
8
A
HIS
-3
-163.58
-59.99
8
A
SER
1
-176.35
124.50
8
A
PRO
30
-69.77
-90.58
8
A
SER
31
174.41
159.73
8
A
ARG
72
64.88
136.46
8
A
ASN
101
-179.20
-32.14
8
A
ASN
128
59.35
99.37
8
A
GLN
153
63.62
160.02
8
A
VAL
156
-152.80
44.70
9
A
HIS
-4
-179.02
52.07
9
A
HIS
-3
-150.01
-42.53
9
A
HIS
-1
-146.62
26.21
9
A
HIS
0
-166.05
41.05
9
A
PRO
30
-69.67
-89.24
9
A
SER
31
176.60
152.30
9
A
ARG
72
62.99
159.56
9
A
ASN
101
-179.97
-32.16
9
A
VAL
127
-118.31
63.96
9
A
THR
147
-111.48
54.78
9
A
SER
151
179.81
127.75
9
A
GLN
153
-144.25
-57.28
9
A
VAL
156
39.74
38.57
9
A
GLN
157
-132.27
-72.85
10
A
HIS
-5
-144.60
46.15
10
A
HIS
-4
62.55
164.90
10
A
SER
1
-175.27
-49.65
10
A
SER
3
58.75
97.35
10
A
PRO
30
-69.76
-91.03
10
A
SER
31
174.21
159.46
10
A
ARG
72
63.23
158.41
10
A
ASN
99
-121.75
-169.63
10
A
ASN
101
-178.08
-32.19
10
A
VAL
127
-105.34
52.39
10
A
SER
155
60.75
170.97
10
A
VAL
156
63.14
104.47
10
A
GLN
157
-174.56
133.40
fewest violations, model1
Repetitive domain (RP) of aciniform spidroin 1 from Nephila antipodiana
1
N
N
A
SER
3
A
SER
10
HELX_P
A
LYS
18
A
LYS
25
1
1
16
A
THR
19
A
THR
26
HELX_P
A
LYS
29
A
LYS
36
1
2
11
A
SER
31
A
SER
38
HELX_P
A
LEU
50
A
LEU
57
1
3
20
A
ASN
53
A
ASN
60
HELX_P
A
ALA
69
A
ALA
76
1
4
17
A
SER
76
A
SER
83
HELX_P
A
SER
95
A
SER
102
1
5
20
A
ASN
102
A
ASN
109
HELX_P
A
ARG
124
A
ARG
131
1
6
23
A
PRO
130
A
PRO
137
HELX_P
A
THR
147
A
THR
154
1
7
18
STRUCTURAL PROTEIN
PROTEIN, STRUCTURAL PROTEIN
2LYI
PDB
1
2LYI
-6
160
2LYI
-6
160
2LYI
A
1
1
167