1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Serrano, P.
Geralt, M.
Pedrini, B.
Wuthrich, K.
Horst, R.
Augustyniak, W.
Joint Center for Structural Genomics (JCSG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be Published
0353
NMR structure of the protein NB7890A from Shewanella sp
10.2210/pdb2lyy/pdb
pdb_00002lyy
11476.627
Uncharacterized protein
2
man
polymer
no
no
SNNENAFYARATELIKLANQQNQNTEIQTGEVSASFMWALARYNAWFGSTSFETKEQMQAKKQEMMDYYMDRYKEMLDAN
MEDYIENFDHYRATQK
SNNENAFYARATELIKLANQQNQNTEIQTGEVSASFMWALARYNAWFGSTSFETKEQMQAKKQEMMDYYMDRYKEMLDAN
MEDYIENFDHYRATQK
A,B
JCSG-367613
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
MR-1
sample
211586
Shewanella oneidensis
562
Escherichia coli
pSpeedET
Joint Center for Structural Genomics
JCSG
PSI:Biology
database_2
pdbx_database_status
pdbx_nmr_software
pdbx_nmr_spectrometer
repository
Initial release
Data collection
Database references
Other
1
0
2012-10-03
1
1
2023-06-14
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_nmr_data
_pdbx_nmr_software.name
_pdbx_nmr_spectrometer.model
Y
BMRB
Y
RCSB
2012-09-21
REL
REL
REL
REL
target function
80
20
2D 1H-15N HSQC
3D 1H-13C NOESY aliphatic
3D 1H-13C NOESY aromatic
3D 1H-15N NOESY
3D HNCA
3D HNCACB
3D CBCA(CO)NH
1.2
mM
[U-98% 13C; U-98% 15N]
50
mM
20
mM
5
mM
0.220
6.5
ambient
298
K
molecular dynamics
1
lowest energy
1.2 mM [U-98% 13C; U-98% 15N] protein, 50 mM sodium chloride, 20 mM sodium phosphate, 5 mM sodium azide, 95% H2O/5% D2O
95% H2O/5% D2O
Brunger A. T. et.al.
refinement
CNS
Luginbuhl, Guntert, Billeter and Wuthrich
refinement
OPALp
600
Bruker
AVANCE
Bruker Avance
800
Bruker
AVANCE
Bruker Avance
SER
1
n
1
SER
1
A
ASN
2
n
2
ASN
2
A
ASN
3
n
3
ASN
3
A
GLU
4
n
4
GLU
4
A
ASN
5
n
5
ASN
5
A
ALA
6
n
6
ALA
6
A
PHE
7
n
7
PHE
7
A
TYR
8
n
8
TYR
8
A
ALA
9
n
9
ALA
9
A
ARG
10
n
10
ARG
10
A
ALA
11
n
11
ALA
11
A
THR
12
n
12
THR
12
A
GLU
13
n
13
GLU
13
A
LEU
14
n
14
LEU
14
A
ILE
15
n
15
ILE
15
A
LYS
16
n
16
LYS
16
A
LEU
17
n
17
LEU
17
A
ALA
18
n
18
ALA
18
A
ASN
19
n
19
ASN
19
A
GLN
20
n
20
GLN
20
A
GLN
21
n
21
GLN
21
A
ASN
22
n
22
ASN
22
A
GLN
23
n
23
GLN
23
A
ASN
24
n
24
ASN
24
A
THR
25
n
25
THR
25
A
GLU
26
n
26
GLU
26
A
ILE
27
n
27
ILE
27
A
GLN
28
n
28
GLN
28
A
THR
29
n
29
THR
29
A
GLY
30
n
30
GLY
30
A
GLU
31
n
31
GLU
31
A
VAL
32
n
32
VAL
32
A
SER
33
n
33
SER
33
A
ALA
34
n
34
ALA
34
A
SER
35
n
35
SER
35
A
PHE
36
n
36
PHE
36
A
MET
37
n
37
MET
37
A
TRP
38
n
38
TRP
38
A
ALA
39
n
39
ALA
39
A
LEU
40
n
40
LEU
40
A
ALA
41
n
41
ALA
41
A
ARG
42
n
42
ARG
42
A
TYR
43
n
43
TYR
43
A
ASN
44
n
44
ASN
44
A
ALA
45
n
45
ALA
45
A
TRP
46
n
46
TRP
46
A
PHE
47
n
47
PHE
47
A
GLY
48
n
48
GLY
48
A
SER
49
n
49
SER
49
A
THR
50
n
50
THR
50
A
SER
51
n
51
SER
51
A
PHE
52
n
52
PHE
52
A
GLU
53
n
53
GLU
53
A
THR
54
n
54
THR
54
A
LYS
55
n
55
LYS
55
A
GLU
56
n
56
GLU
56
A
GLN
57
n
57
GLN
57
A
MET
58
n
58
MET
58
A
GLN
59
n
59
GLN
59
A
ALA
60
n
60
ALA
60
A
LYS
61
n
61
LYS
61
A
LYS
62
n
62
LYS
62
A
GLN
63
n
63
GLN
63
A
GLU
64
n
64
GLU
64
A
MET
65
n
65
MET
65
A
MET
66
n
66
MET
66
A
ASP
67
n
67
ASP
67
A
TYR
68
n
68
TYR
68
A
TYR
69
n
69
TYR
69
A
MET
70
n
70
MET
70
A
ASP
71
n
71
ASP
71
A
ARG
72
n
72
ARG
72
A
TYR
73
n
73
TYR
73
A
LYS
74
n
74
LYS
74
A
GLU
75
n
75
GLU
75
A
MET
76
n
76
MET
76
A
LEU
77
n
77
LEU
77
A
ASP
78
n
78
ASP
78
A
ALA
79
n
79
ALA
79
A
ASN
80
n
80
ASN
80
A
MET
81
n
81
MET
81
A
GLU
82
n
82
GLU
82
A
ASP
83
n
83
ASP
83
A
TYR
84
n
84
TYR
84
A
ILE
85
n
85
ILE
85
A
GLU
86
n
86
GLU
86
A
ASN
87
n
87
ASN
87
A
PHE
88
n
88
PHE
88
A
ASP
89
n
89
ASP
89
A
HIS
90
n
90
HIS
90
A
TYR
91
n
91
TYR
91
A
ARG
92
n
92
ARG
92
A
ALA
93
n
93
ALA
93
A
THR
94
n
94
THR
94
A
GLN
95
n
95
GLN
95
A
LYS
96
n
96
LYS
96
A
SER
201
n
1
SER
201
B
ASN
202
n
2
ASN
202
B
ASN
203
n
3
ASN
203
B
GLU
204
n
4
GLU
204
B
ASN
205
n
5
ASN
205
B
ALA
206
n
6
ALA
206
B
PHE
207
n
7
PHE
207
B
TYR
208
n
8
TYR
208
B
ALA
209
n
9
ALA
209
B
ARG
210
n
10
ARG
210
B
ALA
211
n
11
ALA
211
B
THR
212
n
12
THR
212
B
GLU
213
n
13
GLU
213
B
LEU
214
n
14
LEU
214
B
ILE
215
n
15
ILE
215
B
LYS
216
n
16
LYS
216
B
LEU
217
n
17
LEU
217
B
ALA
218
n
18
ALA
218
B
ASN
219
n
19
ASN
219
B
GLN
220
n
20
GLN
220
B
GLN
221
n
21
GLN
221
B
ASN
222
n
22
ASN
222
B
GLN
223
n
23
GLN
223
B
ASN
224
n
24
ASN
224
B
THR
225
n
25
THR
225
B
GLU
226
n
26
GLU
226
B
ILE
227
n
27
ILE
227
B
GLN
228
n
28
GLN
228
B
THR
229
n
29
THR
229
B
GLY
230
n
30
GLY
230
B
GLU
231
n
31
GLU
231
B
VAL
232
n
32
VAL
232
B
SER
233
n
33
SER
233
B
ALA
234
n
34
ALA
234
B
SER
235
n
35
SER
235
B
PHE
236
n
36
PHE
236
B
MET
237
n
37
MET
237
B
TRP
238
n
38
TRP
238
B
ALA
239
n
39
ALA
239
B
LEU
240
n
40
LEU
240
B
ALA
241
n
41
ALA
241
B
ARG
242
n
42
ARG
242
B
TYR
243
n
43
TYR
243
B
ASN
244
n
44
ASN
244
B
ALA
245
n
45
ALA
245
B
TRP
246
n
46
TRP
246
B
PHE
247
n
47
PHE
247
B
GLY
248
n
48
GLY
248
B
SER
249
n
49
SER
249
B
THR
250
n
50
THR
250
B
SER
251
n
51
SER
251
B
PHE
252
n
52
PHE
252
B
GLU
253
n
53
GLU
253
B
THR
254
n
54
THR
254
B
LYS
255
n
55
LYS
255
B
GLU
256
n
56
GLU
256
B
GLN
257
n
57
GLN
257
B
MET
258
n
58
MET
258
B
GLN
259
n
59
GLN
259
B
ALA
260
n
60
ALA
260
B
LYS
261
n
61
LYS
261
B
LYS
262
n
62
LYS
262
B
GLN
263
n
63
GLN
263
B
GLU
264
n
64
GLU
264
B
MET
265
n
65
MET
265
B
MET
266
n
66
MET
266
B
ASP
267
n
67
ASP
267
B
TYR
268
n
68
TYR
268
B
TYR
269
n
69
TYR
269
B
MET
270
n
70
MET
270
B
ASP
271
n
71
ASP
271
B
ARG
272
n
72
ARG
272
B
TYR
273
n
73
TYR
273
B
LYS
274
n
74
LYS
274
B
GLU
275
n
75
GLU
275
B
MET
276
n
76
MET
276
B
LEU
277
n
77
LEU
277
B
ASP
278
n
78
ASP
278
B
ALA
279
n
79
ALA
279
B
ASN
280
n
80
ASN
280
B
MET
281
n
81
MET
281
B
GLU
282
n
82
GLU
282
B
ASP
283
n
83
ASP
283
B
TYR
284
n
84
TYR
284
B
ILE
285
n
85
ILE
285
B
GLU
286
n
86
GLU
286
B
ASN
287
n
87
ASN
287
B
PHE
288
n
88
PHE
288
B
ASP
289
n
89
ASP
289
B
HIS
290
n
90
HIS
290
B
TYR
291
n
91
TYR
291
B
ARG
292
n
92
ARG
292
B
ALA
293
n
93
ALA
293
B
THR
294
n
94
THR
294
B
GLN
295
n
95
GLN
295
B
LYS
296
n
96
LYS
296
B
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
B
HZ3
OE1
LYS
GLU
62
282
1.54
1
A
B
HZ2
OD1
LYS
ASP
62
278
1.56
1
A
B
OD1
HZ3
ASP
LYS
78
262
1.57
2
A
B
HB3
HG3
TYR
MET
73
237
1.32
2
B
B
HZ2
OE1
LYS
GLU
261
264
1.58
3
B
B
HZ1
OE1
LYS
GLU
255
256
1.59
3
B
B
OD1
HZ3
ASP
LYS
271
274
1.59
4
B
B
HD21
HG13
ASN
ILE
224
227
1.13
4
A
A
OD2
HZ2
ASP
LYS
71
74
1.60
5
A
A
HA
HD12
GLU
ILE
82
85
1.23
5
A
B
HZ
HA2
PHE
GLY
47
230
1.30
5
A
A
HD21
HG13
ASN
ILE
24
27
1.33
7
B
B
HZ1
OE1
LYS
GLU
261
264
1.60
8
B
B
HD21
HG13
ASN
ILE
224
227
1.22
8
B
B
HA
HE21
ARG
GLN
292
295
1.34
8
B
B
OD2
HZ1
ASP
LYS
271
274
1.56
9
A
B
HZ3
OE1
LYS
GLU
62
282
1.59
10
A
A
HD1
H
PHE
GLU
52
53
1.34
10
A
B
HZ2
OD1
LYS
ASP
62
278
1.55
10
A
B
HZ1
OE2
LYS
GLU
62
282
1.58
11
A
B
HB3
HB3
MET
MET
70
270
1.32
11
A
B
HG3
HB3
MET
TYR
37
273
1.34
12
B
B
HG2
HE2
GLU
TYR
204
208
1.23
12
B
B
HE2
HE3
PHE
LYS
252
261
1.31
12
A
A
HE2
HE3
PHE
LYS
52
61
1.33
12
A
B
OE2
HZ1
GLU
LYS
82
262
1.58
17
A
B
HA2
HZ
GLY
PHE
30
247
1.33
17
A
B
HZ1
OD2
LYS
ASP
62
278
1.58
19
A
B
HE3
HA
MET
LYS
70
274
1.34
19
B
B
HZ1
OE1
LYS
GLU
261
264
1.59
20
A
A
HZ2
OE2
LYS
GLU
61
64
1.58
1
A
GLU
4
-82.30
-81.17
1
A
PHE
7
-82.81
41.98
1
B
GLU
204
-81.45
-90.58
1
B
PHE
207
-75.90
43.83
1
B
TYR
269
-94.71
-68.19
2
A
GLU
4
-55.07
-73.09
2
A
PHE
7
-82.18
47.57
2
A
PHE
47
-98.15
-86.87
2
A
ASP
71
-85.19
47.91
2
A
GLU
82
67.64
-2.33
2
B
PHE
247
-95.94
-89.07
2
B
MET
281
-73.67
-165.89
2
B
GLU
282
66.48
-34.59
3
A
GLU
4
-84.22
-72.25
3
A
PHE
7
-82.66
47.35
3
A
GLU
82
67.12
-6.50
3
B
GLU
204
-78.34
-81.34
3
B
ARG
210
-94.10
-62.50
3
B
GLU
282
70.29
-12.25
4
A
GLU
4
-65.80
-81.12
4
A
PHE
7
-78.70
47.18
4
A
ASP
71
-107.42
75.59
4
A
ARG
72
-140.52
-29.95
4
B
GLU
204
-89.46
-92.51
4
B
PHE
207
-82.06
48.34
5
A
GLU
4
-67.99
-83.40
5
A
ARG
10
-100.11
-60.71
5
A
MET
81
-77.20
-168.26
5
A
GLU
82
66.98
-7.69
5
A
TYR
84
73.13
-40.92
5
B
GLU
204
-86.62
-86.51
6
A
GLU
4
-78.79
-80.27
6
A
PHE
7
-83.67
46.13
6
A
ARG
10
-93.32
-60.34
6
A
ARG
72
-147.13
-31.16
6
A
GLU
82
-68.21
12.63
6
B
GLU
204
-91.05
-75.85
6
B
ARG
272
-156.81
-26.81
7
A
GLU
4
-81.77
-81.66
7
B
GLU
204
-62.14
-79.89
7
B
ARG
210
-91.60
-60.60
7
B
ASP
271
-102.03
76.50
7
B
ARG
272
-152.23
-28.92
8
A
GLU
4
-66.79
-72.35
8
A
ASN
5
-120.63
-57.59
8
A
ARG
10
-91.33
-62.07
8
A
GLU
82
63.00
-10.46
8
B
GLU
204
-77.02
-76.18
8
B
GLU
282
70.09
-5.22
9
A
ASN
5
72.59
-60.77
9
A
ARG
10
-99.86
-61.10
9
A
ASP
71
-96.84
57.08
9
B
ASN
205
72.64
-60.94
9
B
PHE
207
-82.25
49.47
9
B
ARG
210
-90.41
-62.27
9
B
ARG
272
-152.87
-34.49
10
A
ASN
5
-148.04
-30.33
10
A
PHE
7
-71.58
42.33
10
A
ARG
72
-164.16
-36.93
10
B
GLU
204
-62.02
-70.09
10
B
PHE
207
-86.59
38.04
10
B
ARG
272
-154.04
-30.02
11
A
GLU
4
-83.51
-80.28
11
A
GLU
26
-178.00
-22.95
11
A
ASP
71
-90.00
33.98
11
A
GLU
82
69.80
-5.10
11
B
GLU
204
-85.69
-113.49
11
B
GLU
282
67.38
-3.36
12
A
ASN
2
-124.51
-66.16
12
A
PHE
7
-81.31
43.41
12
B
GLU
204
-60.52
-88.19
12
B
ARG
210
-91.44
-62.58
13
A
GLU
4
-79.50
-86.37
13
A
ASP
71
-89.50
32.53
13
A
MET
81
-78.84
-168.07
13
A
GLU
82
68.46
-32.31
13
B
GLU
204
-76.11
-83.43
13
B
PHE
207
-86.15
49.57
13
B
GLU
282
69.89
-24.06
14
A
GLU
4
-64.98
-79.69
14
A
PHE
7
-82.06
49.17
14
B
GLU
204
-82.76
-94.36
14
B
ARG
272
-147.76
-29.07
15
A
GLU
4
-76.91
-89.06
15
A
PHE
7
-85.41
49.98
15
B
GLU
204
-68.92
-77.69
15
B
PHE
207
-79.68
43.93
15
B
ARG
210
-91.00
-62.16
15
B
GLU
253
-95.82
-61.16
16
A
GLU
4
-84.13
-77.29
16
A
ARG
10
-99.37
-61.99
16
A
TYR
84
77.50
-0.12
16
A
ILE
85
-92.68
-66.02
16
B
GLU
204
-120.68
-58.69
17
A
GLU
4
-104.33
79.08
17
A
PHE
7
-91.49
42.40
17
A
ASP
71
-82.93
34.49
17
A
MET
81
-75.45
-169.64
17
A
GLU
82
64.17
-11.03
17
B
GLU
204
-114.20
74.27
17
B
PHE
207
-90.59
45.65
17
B
ASP
271
-87.27
42.02
17
B
GLU
282
65.43
-22.90
18
A
ASN
2
-148.86
-53.07
18
A
ASN
5
-136.96
-56.61
18
A
PHE
7
-79.10
49.56
18
A
ARG
10
-98.54
-62.21
18
A
MET
66
-86.63
33.86
18
A
ASP
71
-80.00
31.42
18
A
GLU
82
65.29
-30.60
18
B
GLU
204
-81.39
-90.62
18
B
ARG
210
-96.13
-60.83
18
B
GLU
282
68.63
-12.29
19
A
ASN
2
-99.92
-86.47
19
A
GLU
4
-97.31
-80.58
19
B
ASN
202
-135.64
-79.74
19
B
GLU
204
-132.43
-77.37
20
A
GLU
4
-90.54
-71.84
20
A
PHE
7
-80.36
43.17
20
A
ARG
72
-153.15
-37.01
20
A
GLU
82
66.77
-3.75
20
B
GLU
204
-85.51
-83.48
20
B
PHE
207
-73.51
43.91
20
B
GLU
282
72.09
-31.68
lowest energy, model1
NMR structure of the protein NB7890A from Shewanella sp
1
N
N
1
N
N
A
PHE
7
A
PHE
7
HELX_P
A
GLN
23
A
GLN
23
1
1
17
A
GLN
28
A
GLN
28
HELX_P
A
ASN
44
A
ASN
44
1
2
17
A
ALA
45
A
ALA
45
HELX_P
A
SER
51
A
SER
51
5
3
7
A
THR
54
A
THR
54
HELX_P
A
ALA
60
A
ALA
60
1
4
7
A
LYS
61
A
LYS
61
HELX_P
A
ASP
71
A
ASP
71
1
5
11
A
TYR
73
A
TYR
73
HELX_P
A
GLU
86
A
GLU
86
1
6
14
A
ASN
87
A
ASN
87
HELX_P
A
GLN
95
A
GLN
95
1
7
9
B
PHE
207
B
PHE
7
HELX_P
B
ASN
222
B
ASN
22
1
8
16
B
THR
229
B
THR
29
HELX_P
B
ALA
245
B
ALA
45
1
9
17
B
TRP
246
B
TRP
46
HELX_P
B
SER
251
B
SER
51
5
10
6
B
THR
254
B
THR
54
HELX_P
B
ALA
260
B
ALA
60
1
11
7
B
LYS
261
B
LYS
61
HELX_P
B
MET
266
B
MET
66
1
12
6
B
TYR
269
B
TYR
69
HELX_P
B
ARG
272
B
ARG
72
5
13
4
B
TYR
273
B
TYR
73
HELX_P
B
ASN
287
B
ASN
87
1
14
15
B
ASN
287
B
ASN
87
HELX_P
B
GLN
295
B
GLN
95
1
15
9
Structural Genomics, Unknown Function
DUF3144, PF11342, Structural Genomics, Unknown Function, PSI-Biology, Joint Center for Structural Genomics, JCSG
2LYY
PDB
1
2LYY
1
96
2LYY
1
96
2LYY
A
1
1
96
201
296
2LYY
201
296
2LYY
B
1
1
96