1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Hagn, F.X. Etzkorn, M. Raschle, T. Wagner, G. Membrane Protein Structures by Solution NMR (MPSbyNMR) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US J.Am.Chem.Soc. JACSAT 0004 0002-7863 135 1919 1925 10.1021/ja310901f 23294159 Optimized phospholipid bilayer nanodiscs facilitate high-resolution structure determination of membrane proteins. 2013 10.2210/pdb2m07/pdb pdb_00002m07 16395.812 Outer membrane protein X UNP residues 24-171 1 man polymer no no ATSTVTGGYAQSDAQGQMNKMGGFNLKYRYEEDNSPLGVIGSFTYTEKSRTASSGDYNKNQYYGITAGPAYRINDWASIY GVVGVGYGKFQTTEYPTYKHDTSDYGFSYGAGLQFNPMENVALDFSYEQSRIRSVDVGTWIAGVGYRF ATSTVTGGYAQSDAQGQMNKMGGFNLKYRYEEDNSPLGVIGSFTYTEKSRTASSGDYNKNQYYGITAGPAYRINDWASIY GVVGVGYGKFQTTEYPTYKHDTSDYGFSYGAGLQFNPMENVALDFSYEQSRIRSVDVGTWIAGVGYRF A MPSbyNMR-013 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample ompX, ybiG, b0814, JW0799 83333 Escherichia coli 511693 Escherichia coli BL21DE3 pET11a Membrane Protein Structures by Solution NMR MPSbyNMR PSI:Biology database_2 pdbx_database_status pdbx_nmr_software pdbx_nmr_spectrometer repository Initial release Database references Database references Data collection Database references Other 1 0 2012-12-12 1 1 2013-01-23 1 2 2013-02-20 1 3 2023-06-14 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.status_code_nmr_data _pdbx_nmr_software.name _pdbx_nmr_spectrometer.model NMR resonance assignment of OmpX in DHPC micelles NMR structure of OmpX in DHPC micelles Crystal structure of OmpX NMR resonance assignment of OmpX in phospholipid nanodiscs NMR structure of OmpX in phospholipid nanodiscs Y BMRB Y RCSB 2012-10-21 REL REL REL REL structures with the least restraint violations 50 20 2D 1H-15N HSQC 3D HNCO 3D HNCA 3D HN(CO)CA 3D HN(CA)CO 3D HNCACB 3D 1H-15N NOESY 20 mM 50 mM 10 mM 0.05 % 110 mM 0.1 6.5 ambient 318 K simulated annealing 1 fewest violations 20 mM potassium phosphate, 50 mM sodium chloride, 10 mM EDTA, 0.05 % sodium azide, 110 mM DPC, 95% H2O/5% D2O 95% H2O/5% D2O Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax processing NMRPipe Bruker Biospin collection TopSpin Bruker Biospin processing TopSpin Goddard data analysis Sparky Goddard chemical shift assignment Sparky Goddard peak picking Sparky Schwieters, Kuszewski, Tjandra and Clore structure solution X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore refinement X-PLOR NIH 750 Bruker AVANCE Bruker Avance 800 Bruker AVANCE Bruker Avance ALA 1 n 1 ALA 1 A THR 2 n 2 THR 2 A SER 3 n 3 SER 3 A THR 4 n 4 THR 4 A VAL 5 n 5 VAL 5 A THR 6 n 6 THR 6 A GLY 7 n 7 GLY 7 A GLY 8 n 8 GLY 8 A TYR 9 n 9 TYR 9 A ALA 10 n 10 ALA 10 A GLN 11 n 11 GLN 11 A SER 12 n 12 SER 12 A ASP 13 n 13 ASP 13 A ALA 14 n 14 ALA 14 A GLN 15 n 15 GLN 15 A GLY 16 n 16 GLY 16 A GLN 17 n 17 GLN 17 A MET 18 n 18 MET 18 A ASN 19 n 19 ASN 19 A LYS 20 n 20 LYS 20 A MET 21 n 21 MET 21 A GLY 22 n 22 GLY 22 A GLY 23 n 23 GLY 23 A PHE 24 n 24 PHE 24 A ASN 25 n 25 ASN 25 A LEU 26 n 26 LEU 26 A LYS 27 n 27 LYS 27 A TYR 28 n 28 TYR 28 A ARG 29 n 29 ARG 29 A TYR 30 n 30 TYR 30 A GLU 31 n 31 GLU 31 A GLU 32 n 32 GLU 32 A ASP 33 n 33 ASP 33 A ASN 34 n 34 ASN 34 A SER 35 n 35 SER 35 A PRO 36 n 36 PRO 36 A LEU 37 n 37 LEU 37 A GLY 38 n 38 GLY 38 A VAL 39 n 39 VAL 39 A ILE 40 n 40 ILE 40 A GLY 41 n 41 GLY 41 A SER 42 n 42 SER 42 A PHE 43 n 43 PHE 43 A THR 44 n 44 THR 44 A TYR 45 n 45 TYR 45 A THR 46 n 46 THR 46 A GLU 47 n 47 GLU 47 A LYS 48 n 48 LYS 48 A SER 49 n 49 SER 49 A ARG 50 n 50 ARG 50 A THR 51 n 51 THR 51 A ALA 52 n 52 ALA 52 A SER 53 n 53 SER 53 A SER 54 n 54 SER 54 A GLY 55 n 55 GLY 55 A ASP 56 n 56 ASP 56 A TYR 57 n 57 TYR 57 A ASN 58 n 58 ASN 58 A LYS 59 n 59 LYS 59 A ASN 60 n 60 ASN 60 A GLN 61 n 61 GLN 61 A TYR 62 n 62 TYR 62 A TYR 63 n 63 TYR 63 A GLY 64 n 64 GLY 64 A ILE 65 n 65 ILE 65 A THR 66 n 66 THR 66 A ALA 67 n 67 ALA 67 A GLY 68 n 68 GLY 68 A PRO 69 n 69 PRO 69 A ALA 70 n 70 ALA 70 A TYR 71 n 71 TYR 71 A ARG 72 n 72 ARG 72 A ILE 73 n 73 ILE 73 A ASN 74 n 74 ASN 74 A ASP 75 n 75 ASP 75 A TRP 76 n 76 TRP 76 A ALA 77 n 77 ALA 77 A SER 78 n 78 SER 78 A ILE 79 n 79 ILE 79 A TYR 80 n 80 TYR 80 A GLY 81 n 81 GLY 81 A VAL 82 n 82 VAL 82 A VAL 83 n 83 VAL 83 A GLY 84 n 84 GLY 84 A VAL 85 n 85 VAL 85 A GLY 86 n 86 GLY 86 A TYR 87 n 87 TYR 87 A GLY 88 n 88 GLY 88 A LYS 89 n 89 LYS 89 A PHE 90 n 90 PHE 90 A GLN 91 n 91 GLN 91 A THR 92 n 92 THR 92 A THR 93 n 93 THR 93 A GLU 94 n 94 GLU 94 A TYR 95 n 95 TYR 95 A PRO 96 n 96 PRO 96 A THR 97 n 97 THR 97 A TYR 98 n 98 TYR 98 A LYS 99 n 99 LYS 99 A HIS 100 n 100 HIS 100 A ASP 101 n 101 ASP 101 A THR 102 n 102 THR 102 A SER 103 n 103 SER 103 A ASP 104 n 104 ASP 104 A TYR 105 n 105 TYR 105 A GLY 106 n 106 GLY 106 A PHE 107 n 107 PHE 107 A SER 108 n 108 SER 108 A TYR 109 n 109 TYR 109 A GLY 110 n 110 GLY 110 A ALA 111 n 111 ALA 111 A GLY 112 n 112 GLY 112 A LEU 113 n 113 LEU 113 A GLN 114 n 114 GLN 114 A PHE 115 n 115 PHE 115 A ASN 116 n 116 ASN 116 A PRO 117 n 117 PRO 117 A MET 118 n 118 MET 118 A GLU 119 n 119 GLU 119 A ASN 120 n 120 ASN 120 A VAL 121 n 121 VAL 121 A ALA 122 n 122 ALA 122 A LEU 123 n 123 LEU 123 A ASP 124 n 124 ASP 124 A PHE 125 n 125 PHE 125 A SER 126 n 126 SER 126 A TYR 127 n 127 TYR 127 A GLU 128 n 128 GLU 128 A GLN 129 n 129 GLN 129 A SER 130 n 130 SER 130 A ARG 131 n 131 ARG 131 A ILE 132 n 132 ILE 132 A ARG 133 n 133 ARG 133 A SER 134 n 134 SER 134 A VAL 135 n 135 VAL 135 A ASP 136 n 136 ASP 136 A VAL 137 n 137 VAL 137 A GLY 138 n 138 GLY 138 A THR 139 n 139 THR 139 A TRP 140 n 140 TRP 140 A ILE 141 n 141 ILE 141 A ALA 142 n 142 ALA 142 A GLY 143 n 143 GLY 143 A VAL 144 n 144 VAL 144 A GLY 145 n 145 GLY 145 A TYR 146 n 146 TYR 146 A ARG 147 n 147 ARG 147 A PHE 148 n 148 PHE 148 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ALA 10 A N ALA 10 A O GLY 23 A O GLY 23 A N GLY 22 A N GLY 22 A O GLU 47 A O GLU 47 A N GLY 38 A N GLY 38 A O ALA 70 A O ALA 70 A N TYR 71 A N TYR 71 A O ILE 79 A O ILE 79 A N GLY 86 A N GLY 86 A O GLY 106 A O GLY 106 A N TYR 109 A N TYR 109 A O GLN 129 A O GLN 129 A N SER 126 A N SER 126 A O ILE 141 A O ILE 141 A O VAL 144 A O VAL 144 A N GLY 7 A N GLY 7 1 A A ARG ILE 131 132 -146.65 2 A A ARG ILE 131 132 -144.19 3 A A ARG ILE 131 132 -141.23 4 A A ARG ILE 131 132 -142.87 5 A A ARG ILE 131 132 -143.34 6 A A ARG ILE 131 132 -144.30 7 A A ARG ILE 131 132 -146.94 8 A A ARG ILE 131 132 -144.02 9 A A ARG ILE 131 132 -144.94 10 A A ARG ILE 131 132 -146.38 11 A A ARG ILE 131 132 -145.30 12 A A ARG ILE 131 132 -147.80 13 A A ARG ILE 131 132 -145.21 14 A A ARG ILE 131 132 -143.38 15 A A ARG ILE 131 132 -146.56 16 A A ARG ILE 131 132 -142.09 17 A A ARG ILE 131 132 -144.79 18 A A ARG ILE 131 132 -144.48 19 A A ARG ILE 131 132 -142.74 20 A A ARG ILE 131 132 -145.53 1 A SER 53 62.98 132.12 1 A ASN 58 35.12 31.49 1 A TRP 76 -86.16 46.28 1 A GLU 94 -175.78 -69.48 1 A PRO 96 -45.77 99.79 1 A GLU 119 66.48 -171.94 2 A GLN 17 69.86 -0.58 2 A SER 49 62.36 -81.75 2 A ALA 52 -67.88 93.96 2 A LYS 59 -138.35 -68.01 2 A TRP 76 -86.06 47.94 2 A THR 93 -162.77 -66.26 2 A THR 102 47.14 -169.68 2 A GLU 119 67.27 -165.95 3 A GLN 17 155.58 -44.45 3 A LYS 20 -58.15 170.66 3 A ASP 56 61.93 -174.40 3 A TYR 57 -54.54 -175.69 3 A ASP 75 -86.44 38.46 3 A GLU 119 67.24 -167.61 4 A THR 2 -148.85 -58.34 4 A ASP 56 66.66 -79.56 4 A ASP 75 -165.31 85.57 4 A HIS 100 -49.74 97.27 4 A GLU 119 67.84 -166.48 5 A GLN 17 170.50 -52.91 5 A LYS 20 -49.50 163.78 5 A ARG 50 -98.44 -68.90 5 A ASP 56 62.23 152.30 5 A ASN 58 -173.58 111.85 5 A LYS 59 -147.43 -74.55 5 A TRP 76 40.39 29.51 5 A MET 118 -55.71 174.03 5 A GLU 119 65.35 -174.70 6 A SER 49 -166.22 34.73 6 A ASN 60 61.79 109.48 6 A TRP 76 -87.47 40.77 6 A GLU 94 54.79 88.13 6 A GLU 119 78.35 -167.48 7 A GLN 17 165.08 -54.55 7 A ARG 50 -167.30 -68.25 7 A ASN 60 66.91 140.12 7 A ASP 75 -78.98 -168.61 7 A TRP 76 -85.49 45.05 7 A GLU 94 -104.35 -71.62 7 A TYR 98 -174.10 -54.97 7 A THR 102 67.18 169.94 7 A GLU 119 74.26 -157.12 8 A ASP 75 -173.75 96.49 8 A GLU 94 45.71 23.26 8 A TYR 98 51.30 -91.65 8 A GLU 119 65.45 -173.79 9 A GLN 17 169.58 -54.49 9 A ASP 56 80.53 -40.18 9 A TRP 76 45.64 25.55 9 A TYR 95 -176.34 149.42 9 A PRO 96 -91.52 53.93 9 A MET 118 -53.99 177.51 9 A GLU 119 63.73 -175.06 10 A LYS 20 -56.42 172.44 10 A ASP 56 75.35 -75.18 10 A ASP 75 -69.68 -178.20 10 A TRP 76 -87.40 40.84 10 A HIS 100 61.20 71.04 10 A MET 118 -59.33 170.17 10 A GLU 119 65.39 -171.35 11 A TYR 57 63.92 139.29 11 A TRP 76 -86.82 48.24 11 A HIS 100 63.69 144.68 11 A MET 118 -58.69 176.56 11 A GLU 119 61.64 -174.45 12 A THR 2 -124.85 -62.16 12 A LYS 59 -95.08 -68.48 12 A ASP 75 -65.71 -179.25 12 A TRP 76 -88.05 37.47 12 A GLU 119 65.39 -174.47 13 A ASN 58 55.22 89.05 13 A ASN 74 -94.82 -66.52 13 A GLU 119 65.35 -175.91 14 A GLN 17 83.49 -28.09 14 A ASP 56 64.52 144.23 14 A GLU 119 71.81 -153.73 15 A ASP 56 60.96 62.54 15 A ASN 58 -159.13 -73.84 15 A ASN 60 -175.16 120.87 15 A ASP 75 -69.50 -178.47 15 A TRP 76 -86.09 48.70 15 A HIS 100 80.75 -42.70 15 A GLU 119 79.31 -164.16 16 A ARG 50 47.99 93.69 16 A ALA 52 -60.53 93.78 16 A SER 53 -178.34 -175.34 16 A ASN 58 -55.67 170.16 16 A LYS 59 -134.65 -155.18 16 A TRP 76 -85.72 49.79 16 A GLU 119 68.15 -148.31 17 A TRP 76 -86.77 48.55 17 A GLU 94 63.94 -83.43 17 A TYR 98 46.44 92.82 17 A HIS 100 -173.27 43.22 17 A GLU 119 72.98 -160.48 18 A THR 2 -159.14 -50.49 18 A ALA 52 -58.08 95.24 18 A ASN 58 59.28 83.10 18 A TRP 76 -126.45 -169.67 18 A GLU 94 49.66 26.46 18 A GLU 119 79.28 -162.60 19 A GLN 17 167.65 -52.41 19 A ASP 56 56.68 101.17 19 A TYR 57 -55.93 -74.88 19 A TRP 76 -85.61 48.05 19 A GLU 94 -64.53 86.55 19 A PRO 96 -47.90 172.32 19 A THR 102 53.34 -173.92 19 A GLU 119 71.46 -145.25 20 A LYS 48 -172.31 136.67 20 A SER 49 -177.92 -176.80 20 A THR 51 -47.19 96.85 20 A SER 53 -59.00 171.76 20 A TYR 57 59.12 -94.80 20 A ASN 60 60.43 103.16 20 A TYR 95 177.27 -55.11 20 A TYR 98 -175.01 -67.47 20 A HIS 100 64.07 -84.10 20 A GLU 119 68.58 -165.31 fewest violations, model 1 NMR structure of OmpX in DPC micelles 1 N N A MET 118 A MET 118 HELX_P A VAL 121 A VAL 121 5 1 4 MEMBRANE PROTEIN beta barrel, MEMBRANE PROTEIN, Structural Genomics, PSI-Biology, Membrane Protein Structures by Solution NMR, MPSbyNMR OMPX_ECOLI UNP 1 24 P0A917 ATSTVTGGYAQSDAQGQMNKMGGFNLKYRYEEDNSPLGVIGSFTYTEKSRTASSGDYNKNQYYGITAGPAYRINDWASIY GVVGVGYGKFQTTEYPTYKHDTSDYGFSYGAGLQFNPMENVALDFSYEQSRIRSVDVGTWIAGVGYRF 24 171 2M07 1 148 P0A917 A 1 1 148 9 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A THR 4 A THR 4 A SER 12 A SER 12 A MET 21 A MET 21 A ARG 29 A ARG 29 A GLY 38 A GLY 38 A GLU 47 A GLU 47 A ASN 60 A ASN 60 A TYR 71 A TYR 71 A SER 78 A SER 78 A PHE 90 A PHE 90 A SER 103 A SER 103 A PHE 115 A PHE 115 A ALA 122 A ALA 122 A SER 130 A SER 130 A VAL 137 A VAL 137 A ARG 147 A ARG 147 A THR 4 A THR 4 A SER 12 A SER 12