1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Hagn, F.X.
Etzkorn, M.
Raschle, T.
Wagner, G.
Membrane Protein Structures by Solution NMR (MPSbyNMR)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
J.Am.Chem.Soc.
JACSAT
0004
0002-7863
135
1919
1925
10.1021/ja310901f
23294159
Optimized phospholipid bilayer nanodiscs facilitate high-resolution structure determination of membrane proteins.
2013
10.2210/pdb2m07/pdb
pdb_00002m07
16395.812
Outer membrane protein X
UNP residues 24-171
1
man
polymer
no
no
ATSTVTGGYAQSDAQGQMNKMGGFNLKYRYEEDNSPLGVIGSFTYTEKSRTASSGDYNKNQYYGITAGPAYRINDWASIY
GVVGVGYGKFQTTEYPTYKHDTSDYGFSYGAGLQFNPMENVALDFSYEQSRIRSVDVGTWIAGVGYRF
ATSTVTGGYAQSDAQGQMNKMGGFNLKYRYEEDNSPLGVIGSFTYTEKSRTASSGDYNKNQYYGITAGPAYRINDWASIY
GVVGVGYGKFQTTEYPTYKHDTSDYGFSYGAGLQFNPMENVALDFSYEQSRIRSVDVGTWIAGVGYRF
A
MPSbyNMR-013
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
ompX, ybiG, b0814, JW0799
83333
Escherichia coli
511693
Escherichia coli
BL21DE3
pET11a
Membrane Protein Structures by Solution NMR
MPSbyNMR
PSI:Biology
database_2
pdbx_database_status
pdbx_nmr_software
pdbx_nmr_spectrometer
repository
Initial release
Database references
Database references
Data collection
Database references
Other
1
0
2012-12-12
1
1
2013-01-23
1
2
2013-02-20
1
3
2023-06-14
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_nmr_data
_pdbx_nmr_software.name
_pdbx_nmr_spectrometer.model
NMR resonance assignment of OmpX in DHPC micelles
NMR structure of OmpX in DHPC micelles
Crystal structure of OmpX
NMR resonance assignment of OmpX in phospholipid nanodiscs
NMR structure of OmpX in phospholipid nanodiscs
Y
BMRB
Y
RCSB
2012-10-21
REL
REL
REL
REL
structures with the least restraint violations
50
20
2D 1H-15N HSQC
3D HNCO
3D HNCA
3D HN(CO)CA
3D HN(CA)CO
3D HNCACB
3D 1H-15N NOESY
20
mM
50
mM
10
mM
0.05
%
110
mM
0.1
6.5
ambient
318
K
simulated annealing
1
fewest violations
20 mM potassium phosphate, 50 mM sodium chloride, 10 mM EDTA, 0.05 % sodium azide, 110 mM DPC, 95% H2O/5% D2O
95% H2O/5% D2O
Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
processing
NMRPipe
Bruker Biospin
collection
TopSpin
Bruker Biospin
processing
TopSpin
Goddard
data analysis
Sparky
Goddard
chemical shift assignment
Sparky
Goddard
peak picking
Sparky
Schwieters, Kuszewski, Tjandra and Clore
structure solution
X-PLOR NIH
Schwieters, Kuszewski, Tjandra and Clore
refinement
X-PLOR NIH
750
Bruker
AVANCE
Bruker Avance
800
Bruker
AVANCE
Bruker Avance
ALA
1
n
1
ALA
1
A
THR
2
n
2
THR
2
A
SER
3
n
3
SER
3
A
THR
4
n
4
THR
4
A
VAL
5
n
5
VAL
5
A
THR
6
n
6
THR
6
A
GLY
7
n
7
GLY
7
A
GLY
8
n
8
GLY
8
A
TYR
9
n
9
TYR
9
A
ALA
10
n
10
ALA
10
A
GLN
11
n
11
GLN
11
A
SER
12
n
12
SER
12
A
ASP
13
n
13
ASP
13
A
ALA
14
n
14
ALA
14
A
GLN
15
n
15
GLN
15
A
GLY
16
n
16
GLY
16
A
GLN
17
n
17
GLN
17
A
MET
18
n
18
MET
18
A
ASN
19
n
19
ASN
19
A
LYS
20
n
20
LYS
20
A
MET
21
n
21
MET
21
A
GLY
22
n
22
GLY
22
A
GLY
23
n
23
GLY
23
A
PHE
24
n
24
PHE
24
A
ASN
25
n
25
ASN
25
A
LEU
26
n
26
LEU
26
A
LYS
27
n
27
LYS
27
A
TYR
28
n
28
TYR
28
A
ARG
29
n
29
ARG
29
A
TYR
30
n
30
TYR
30
A
GLU
31
n
31
GLU
31
A
GLU
32
n
32
GLU
32
A
ASP
33
n
33
ASP
33
A
ASN
34
n
34
ASN
34
A
SER
35
n
35
SER
35
A
PRO
36
n
36
PRO
36
A
LEU
37
n
37
LEU
37
A
GLY
38
n
38
GLY
38
A
VAL
39
n
39
VAL
39
A
ILE
40
n
40
ILE
40
A
GLY
41
n
41
GLY
41
A
SER
42
n
42
SER
42
A
PHE
43
n
43
PHE
43
A
THR
44
n
44
THR
44
A
TYR
45
n
45
TYR
45
A
THR
46
n
46
THR
46
A
GLU
47
n
47
GLU
47
A
LYS
48
n
48
LYS
48
A
SER
49
n
49
SER
49
A
ARG
50
n
50
ARG
50
A
THR
51
n
51
THR
51
A
ALA
52
n
52
ALA
52
A
SER
53
n
53
SER
53
A
SER
54
n
54
SER
54
A
GLY
55
n
55
GLY
55
A
ASP
56
n
56
ASP
56
A
TYR
57
n
57
TYR
57
A
ASN
58
n
58
ASN
58
A
LYS
59
n
59
LYS
59
A
ASN
60
n
60
ASN
60
A
GLN
61
n
61
GLN
61
A
TYR
62
n
62
TYR
62
A
TYR
63
n
63
TYR
63
A
GLY
64
n
64
GLY
64
A
ILE
65
n
65
ILE
65
A
THR
66
n
66
THR
66
A
ALA
67
n
67
ALA
67
A
GLY
68
n
68
GLY
68
A
PRO
69
n
69
PRO
69
A
ALA
70
n
70
ALA
70
A
TYR
71
n
71
TYR
71
A
ARG
72
n
72
ARG
72
A
ILE
73
n
73
ILE
73
A
ASN
74
n
74
ASN
74
A
ASP
75
n
75
ASP
75
A
TRP
76
n
76
TRP
76
A
ALA
77
n
77
ALA
77
A
SER
78
n
78
SER
78
A
ILE
79
n
79
ILE
79
A
TYR
80
n
80
TYR
80
A
GLY
81
n
81
GLY
81
A
VAL
82
n
82
VAL
82
A
VAL
83
n
83
VAL
83
A
GLY
84
n
84
GLY
84
A
VAL
85
n
85
VAL
85
A
GLY
86
n
86
GLY
86
A
TYR
87
n
87
TYR
87
A
GLY
88
n
88
GLY
88
A
LYS
89
n
89
LYS
89
A
PHE
90
n
90
PHE
90
A
GLN
91
n
91
GLN
91
A
THR
92
n
92
THR
92
A
THR
93
n
93
THR
93
A
GLU
94
n
94
GLU
94
A
TYR
95
n
95
TYR
95
A
PRO
96
n
96
PRO
96
A
THR
97
n
97
THR
97
A
TYR
98
n
98
TYR
98
A
LYS
99
n
99
LYS
99
A
HIS
100
n
100
HIS
100
A
ASP
101
n
101
ASP
101
A
THR
102
n
102
THR
102
A
SER
103
n
103
SER
103
A
ASP
104
n
104
ASP
104
A
TYR
105
n
105
TYR
105
A
GLY
106
n
106
GLY
106
A
PHE
107
n
107
PHE
107
A
SER
108
n
108
SER
108
A
TYR
109
n
109
TYR
109
A
GLY
110
n
110
GLY
110
A
ALA
111
n
111
ALA
111
A
GLY
112
n
112
GLY
112
A
LEU
113
n
113
LEU
113
A
GLN
114
n
114
GLN
114
A
PHE
115
n
115
PHE
115
A
ASN
116
n
116
ASN
116
A
PRO
117
n
117
PRO
117
A
MET
118
n
118
MET
118
A
GLU
119
n
119
GLU
119
A
ASN
120
n
120
ASN
120
A
VAL
121
n
121
VAL
121
A
ALA
122
n
122
ALA
122
A
LEU
123
n
123
LEU
123
A
ASP
124
n
124
ASP
124
A
PHE
125
n
125
PHE
125
A
SER
126
n
126
SER
126
A
TYR
127
n
127
TYR
127
A
GLU
128
n
128
GLU
128
A
GLN
129
n
129
GLN
129
A
SER
130
n
130
SER
130
A
ARG
131
n
131
ARG
131
A
ILE
132
n
132
ILE
132
A
ARG
133
n
133
ARG
133
A
SER
134
n
134
SER
134
A
VAL
135
n
135
VAL
135
A
ASP
136
n
136
ASP
136
A
VAL
137
n
137
VAL
137
A
GLY
138
n
138
GLY
138
A
THR
139
n
139
THR
139
A
TRP
140
n
140
TRP
140
A
ILE
141
n
141
ILE
141
A
ALA
142
n
142
ALA
142
A
GLY
143
n
143
GLY
143
A
VAL
144
n
144
VAL
144
A
GLY
145
n
145
GLY
145
A
TYR
146
n
146
TYR
146
A
ARG
147
n
147
ARG
147
A
PHE
148
n
148
PHE
148
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ALA
10
A
N
ALA
10
A
O
GLY
23
A
O
GLY
23
A
N
GLY
22
A
N
GLY
22
A
O
GLU
47
A
O
GLU
47
A
N
GLY
38
A
N
GLY
38
A
O
ALA
70
A
O
ALA
70
A
N
TYR
71
A
N
TYR
71
A
O
ILE
79
A
O
ILE
79
A
N
GLY
86
A
N
GLY
86
A
O
GLY
106
A
O
GLY
106
A
N
TYR
109
A
N
TYR
109
A
O
GLN
129
A
O
GLN
129
A
N
SER
126
A
N
SER
126
A
O
ILE
141
A
O
ILE
141
A
O
VAL
144
A
O
VAL
144
A
N
GLY
7
A
N
GLY
7
1
A
A
ARG
ILE
131
132
-146.65
2
A
A
ARG
ILE
131
132
-144.19
3
A
A
ARG
ILE
131
132
-141.23
4
A
A
ARG
ILE
131
132
-142.87
5
A
A
ARG
ILE
131
132
-143.34
6
A
A
ARG
ILE
131
132
-144.30
7
A
A
ARG
ILE
131
132
-146.94
8
A
A
ARG
ILE
131
132
-144.02
9
A
A
ARG
ILE
131
132
-144.94
10
A
A
ARG
ILE
131
132
-146.38
11
A
A
ARG
ILE
131
132
-145.30
12
A
A
ARG
ILE
131
132
-147.80
13
A
A
ARG
ILE
131
132
-145.21
14
A
A
ARG
ILE
131
132
-143.38
15
A
A
ARG
ILE
131
132
-146.56
16
A
A
ARG
ILE
131
132
-142.09
17
A
A
ARG
ILE
131
132
-144.79
18
A
A
ARG
ILE
131
132
-144.48
19
A
A
ARG
ILE
131
132
-142.74
20
A
A
ARG
ILE
131
132
-145.53
1
A
SER
53
62.98
132.12
1
A
ASN
58
35.12
31.49
1
A
TRP
76
-86.16
46.28
1
A
GLU
94
-175.78
-69.48
1
A
PRO
96
-45.77
99.79
1
A
GLU
119
66.48
-171.94
2
A
GLN
17
69.86
-0.58
2
A
SER
49
62.36
-81.75
2
A
ALA
52
-67.88
93.96
2
A
LYS
59
-138.35
-68.01
2
A
TRP
76
-86.06
47.94
2
A
THR
93
-162.77
-66.26
2
A
THR
102
47.14
-169.68
2
A
GLU
119
67.27
-165.95
3
A
GLN
17
155.58
-44.45
3
A
LYS
20
-58.15
170.66
3
A
ASP
56
61.93
-174.40
3
A
TYR
57
-54.54
-175.69
3
A
ASP
75
-86.44
38.46
3
A
GLU
119
67.24
-167.61
4
A
THR
2
-148.85
-58.34
4
A
ASP
56
66.66
-79.56
4
A
ASP
75
-165.31
85.57
4
A
HIS
100
-49.74
97.27
4
A
GLU
119
67.84
-166.48
5
A
GLN
17
170.50
-52.91
5
A
LYS
20
-49.50
163.78
5
A
ARG
50
-98.44
-68.90
5
A
ASP
56
62.23
152.30
5
A
ASN
58
-173.58
111.85
5
A
LYS
59
-147.43
-74.55
5
A
TRP
76
40.39
29.51
5
A
MET
118
-55.71
174.03
5
A
GLU
119
65.35
-174.70
6
A
SER
49
-166.22
34.73
6
A
ASN
60
61.79
109.48
6
A
TRP
76
-87.47
40.77
6
A
GLU
94
54.79
88.13
6
A
GLU
119
78.35
-167.48
7
A
GLN
17
165.08
-54.55
7
A
ARG
50
-167.30
-68.25
7
A
ASN
60
66.91
140.12
7
A
ASP
75
-78.98
-168.61
7
A
TRP
76
-85.49
45.05
7
A
GLU
94
-104.35
-71.62
7
A
TYR
98
-174.10
-54.97
7
A
THR
102
67.18
169.94
7
A
GLU
119
74.26
-157.12
8
A
ASP
75
-173.75
96.49
8
A
GLU
94
45.71
23.26
8
A
TYR
98
51.30
-91.65
8
A
GLU
119
65.45
-173.79
9
A
GLN
17
169.58
-54.49
9
A
ASP
56
80.53
-40.18
9
A
TRP
76
45.64
25.55
9
A
TYR
95
-176.34
149.42
9
A
PRO
96
-91.52
53.93
9
A
MET
118
-53.99
177.51
9
A
GLU
119
63.73
-175.06
10
A
LYS
20
-56.42
172.44
10
A
ASP
56
75.35
-75.18
10
A
ASP
75
-69.68
-178.20
10
A
TRP
76
-87.40
40.84
10
A
HIS
100
61.20
71.04
10
A
MET
118
-59.33
170.17
10
A
GLU
119
65.39
-171.35
11
A
TYR
57
63.92
139.29
11
A
TRP
76
-86.82
48.24
11
A
HIS
100
63.69
144.68
11
A
MET
118
-58.69
176.56
11
A
GLU
119
61.64
-174.45
12
A
THR
2
-124.85
-62.16
12
A
LYS
59
-95.08
-68.48
12
A
ASP
75
-65.71
-179.25
12
A
TRP
76
-88.05
37.47
12
A
GLU
119
65.39
-174.47
13
A
ASN
58
55.22
89.05
13
A
ASN
74
-94.82
-66.52
13
A
GLU
119
65.35
-175.91
14
A
GLN
17
83.49
-28.09
14
A
ASP
56
64.52
144.23
14
A
GLU
119
71.81
-153.73
15
A
ASP
56
60.96
62.54
15
A
ASN
58
-159.13
-73.84
15
A
ASN
60
-175.16
120.87
15
A
ASP
75
-69.50
-178.47
15
A
TRP
76
-86.09
48.70
15
A
HIS
100
80.75
-42.70
15
A
GLU
119
79.31
-164.16
16
A
ARG
50
47.99
93.69
16
A
ALA
52
-60.53
93.78
16
A
SER
53
-178.34
-175.34
16
A
ASN
58
-55.67
170.16
16
A
LYS
59
-134.65
-155.18
16
A
TRP
76
-85.72
49.79
16
A
GLU
119
68.15
-148.31
17
A
TRP
76
-86.77
48.55
17
A
GLU
94
63.94
-83.43
17
A
TYR
98
46.44
92.82
17
A
HIS
100
-173.27
43.22
17
A
GLU
119
72.98
-160.48
18
A
THR
2
-159.14
-50.49
18
A
ALA
52
-58.08
95.24
18
A
ASN
58
59.28
83.10
18
A
TRP
76
-126.45
-169.67
18
A
GLU
94
49.66
26.46
18
A
GLU
119
79.28
-162.60
19
A
GLN
17
167.65
-52.41
19
A
ASP
56
56.68
101.17
19
A
TYR
57
-55.93
-74.88
19
A
TRP
76
-85.61
48.05
19
A
GLU
94
-64.53
86.55
19
A
PRO
96
-47.90
172.32
19
A
THR
102
53.34
-173.92
19
A
GLU
119
71.46
-145.25
20
A
LYS
48
-172.31
136.67
20
A
SER
49
-177.92
-176.80
20
A
THR
51
-47.19
96.85
20
A
SER
53
-59.00
171.76
20
A
TYR
57
59.12
-94.80
20
A
ASN
60
60.43
103.16
20
A
TYR
95
177.27
-55.11
20
A
TYR
98
-175.01
-67.47
20
A
HIS
100
64.07
-84.10
20
A
GLU
119
68.58
-165.31
fewest violations, model 1
NMR structure of OmpX in DPC micelles
1
N
N
A
MET
118
A
MET
118
HELX_P
A
VAL
121
A
VAL
121
5
1
4
MEMBRANE PROTEIN
beta barrel, MEMBRANE PROTEIN, Structural Genomics, PSI-Biology, Membrane Protein Structures by Solution NMR, MPSbyNMR
OMPX_ECOLI
UNP
1
24
P0A917
ATSTVTGGYAQSDAQGQMNKMGGFNLKYRYEEDNSPLGVIGSFTYTEKSRTASSGDYNKNQYYGITAGPAYRINDWASIY
GVVGVGYGKFQTTEYPTYKHDTSDYGFSYGAGLQFNPMENVALDFSYEQSRIRSVDVGTWIAGVGYRF
24
171
2M07
1
148
P0A917
A
1
1
148
9
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
THR
4
A
THR
4
A
SER
12
A
SER
12
A
MET
21
A
MET
21
A
ARG
29
A
ARG
29
A
GLY
38
A
GLY
38
A
GLU
47
A
GLU
47
A
ASN
60
A
ASN
60
A
TYR
71
A
TYR
71
A
SER
78
A
SER
78
A
PHE
90
A
PHE
90
A
SER
103
A
SER
103
A
PHE
115
A
PHE
115
A
ALA
122
A
ALA
122
A
SER
130
A
SER
130
A
VAL
137
A
VAL
137
A
ARG
147
A
ARG
147
A
THR
4
A
THR
4
A
SER
12
A
SER
12