1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Song, J. Patel, D.J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C9 H21 N2 O2 1 189.275 n N-TRIMETHYLLYSINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Mol.Cell MOCEFL 2168 1097-2765 49 571 582 10.1016/j.molcel.2012.11.026 23273982 An H3K36 Methylation-Engaging Tudor Motif of Polycomb-like Proteins Mediates PRC2 Complex Targeting. 2013 8737.847 PHD finger protein 1 1 man polymer 1259.500 H3K36me3 peptide 1 syn polymer Protein PHF1, Polycomb-like protein 1, hPCl1 no no SRLSRSGASSLWDPASPAPTSGPRPRLWEGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWKDISPAAL SRLSRSGASSLWDPASPAPTSGPRPRLWEGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWKDISPAAL A polypeptide(L) no yes ATGGV(M3L)KPHRY ATGGVKKPHRY B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample PHF1, PCL1 9606 Homo sapiens 562 Escherichia coli plasmid PRSF-Duet repository Initial release Database references 1 0 2013-01-16 1 1 2013-02-27 BMRB Y RCSB 2012-10-30 REL REL REL structures with the lowest energy 100 20 3D 1H-13C NOESY aliphatic 3D 1H-13C NOESY aromatic 2D 1H-15N HSQC 3D HNCACB 3D HBHA(CO)NH 3D CBCA(CO)NH 3D HCCH-TOCSY 2D 1H-1H NOESY 3D 1H-15N NOESY 0.3-0.5 mM [U-100% 13C; U-100% 15N] 0.6-1.0 mM 50 7.0 ambient 298 K simulated annealing, molecular dynamics 1 lowest energy 0.3-0.5 mM [U-100% 13C; U-100% 15N] PHF1 tudor, 0.6-1.0 mM H3K36me3 peptide, 90% H2O/10% D2O 90% H2O/10% D2O Schwieters, Kuszewski, Tjandra and Clore refinement X-PLOR_NIH 900 Bruker DMX Bruker DMX 700 Bruker DMX Bruker DMX 600 Bruker DMX Bruker DMX SER 5 n 1 SER 5 A ARG 6 n 2 ARG 6 A LEU 7 n 3 LEU 7 A SER 8 n 4 SER 8 A ARG 9 n 5 ARG 9 A SER 10 n 6 SER 10 A GLY 11 n 7 GLY 11 A ALA 12 n 8 ALA 12 A SER 13 n 9 SER 13 A SER 14 n 10 SER 14 A LEU 15 n 11 LEU 15 A TRP 16 n 12 TRP 16 A ASP 17 n 13 ASP 17 A PRO 18 n 14 PRO 18 A ALA 19 n 15 ALA 19 A SER 20 n 16 SER 20 A PRO 21 n 17 PRO 21 A ALA 22 n 18 ALA 22 A PRO 23 n 19 PRO 23 A THR 24 n 20 THR 24 A SER 25 n 21 SER 25 A GLY 26 n 22 GLY 26 A PRO 27 n 23 PRO 27 A ARG 28 n 24 ARG 28 A PRO 29 n 25 PRO 29 A ARG 30 n 26 ARG 30 A LEU 31 n 27 LEU 31 A TRP 32 n 28 TRP 32 A GLU 33 n 29 GLU 33 A GLY 34 n 30 GLY 34 A GLN 35 n 31 GLN 35 A ASP 36 n 32 ASP 36 A VAL 37 n 33 VAL 37 A LEU 38 n 34 LEU 38 A ALA 39 n 35 ALA 39 A ARG 40 n 36 ARG 40 A TRP 41 n 37 TRP 41 A THR 42 n 38 THR 42 A ASP 43 n 39 ASP 43 A GLY 44 n 40 GLY 44 A LEU 45 n 41 LEU 45 A LEU 46 n 42 LEU 46 A TYR 47 n 43 TYR 47 A LEU 48 n 44 LEU 48 A GLY 49 n 45 GLY 49 A THR 50 n 46 THR 50 A ILE 51 n 47 ILE 51 A LYS 52 n 48 LYS 52 A LYS 53 n 49 LYS 53 A VAL 54 n 50 VAL 54 A ASP 55 n 51 ASP 55 A SER 56 n 52 SER 56 A ALA 57 n 53 ALA 57 A ARG 58 n 54 ARG 58 A GLU 59 n 55 GLU 59 A VAL 60 n 56 VAL 60 A CYS 61 n 57 CYS 61 A LEU 62 n 58 LEU 62 A VAL 63 n 59 VAL 63 A GLN 64 n 60 GLN 64 A PHE 65 n 61 PHE 65 A GLU 66 n 62 GLU 66 A ASP 67 n 63 ASP 67 A ASP 68 n 64 ASP 68 A SER 69 n 65 SER 69 A GLN 70 n 66 GLN 70 A PHE 71 n 67 PHE 71 A LEU 72 n 68 LEU 72 A VAL 73 n 69 VAL 73 A LEU 74 n 70 LEU 74 A TRP 75 n 71 TRP 75 A LYS 76 n 72 LYS 76 A ASP 77 n 73 ASP 77 A ILE 78 n 74 ILE 78 A SER 79 n 75 SER 79 A PRO 80 n 76 PRO 80 A ALA 81 n 77 ALA 81 A ALA 82 n 78 ALA 82 A LEU 83 n 79 LEU 83 A ALA 331 n 1 ALA 331 B THR 332 n 2 THR 332 B GLY 333 n 3 GLY 333 B GLY 334 n 4 GLY 334 B VAL 335 n 5 VAL 335 B M3L 336 n 6 M3L 336 B LYS 337 n 7 LYS 337 B PRO 338 n 8 PRO 338 B HIS 339 n 9 HIS 339 B ARG 340 n 10 ARG 340 B TYR 341 n 11 TYR 341 B author_defined_assembly 2 dimeric B M3L 336 N-TRIMETHYLLYSINE B M3L 6 LYS 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N VAL 37 A N VAL 33 A O GLY 49 A O GLY 45 A N THR 50 A N THR 46 A O GLN 64 A O GLN 60 A N CYS 61 A N CYS 57 A O VAL 73 A O VAL 69 1 A O LEU 83 A O LEU 79 1 Y 1 B O TYR 341 B O TYR 11 1 Y 2 A O LEU 83 A O LEU 79 1 Y 2 B O TYR 341 B O TYR 11 1 Y 3 A O LEU 83 A O LEU 79 1 Y 3 B O TYR 341 B O TYR 11 1 Y 4 A O LEU 83 A O LEU 79 1 Y 4 B O TYR 341 B O TYR 11 1 Y 5 A O LEU 83 A O LEU 79 1 Y 5 B O TYR 341 B O TYR 11 1 Y 6 A O LEU 83 A O LEU 79 1 Y 6 B O TYR 341 B O TYR 11 1 Y 7 A O LEU 83 A O LEU 79 1 Y 7 B O TYR 341 B O TYR 11 1 Y 8 A O LEU 83 A O LEU 79 1 Y 8 B O TYR 341 B O TYR 11 1 Y 9 A O LEU 83 A O LEU 79 1 Y 9 B O TYR 341 B O TYR 11 1 Y 10 A O LEU 83 A O LEU 79 1 Y 10 B O TYR 341 B O TYR 11 1 Y 11 A O LEU 83 A O LEU 79 1 Y 11 B O TYR 341 B O TYR 11 1 Y 12 A O LEU 83 A O LEU 79 1 Y 12 B O TYR 341 B O TYR 11 1 Y 13 A O LEU 83 A O LEU 79 1 Y 13 B O TYR 341 B O TYR 11 1 Y 14 A O LEU 83 A O LEU 79 1 Y 14 B O TYR 341 B O TYR 11 1 Y 15 A O LEU 83 A O LEU 79 1 Y 15 B O TYR 341 B O TYR 11 1 Y 16 A O LEU 83 A O LEU 79 1 Y 16 B O TYR 341 B O TYR 11 1 Y 17 A O LEU 83 A O LEU 79 1 Y 17 B O TYR 341 B O TYR 11 1 Y 18 A O LEU 83 A O LEU 79 1 Y 18 B O TYR 341 B O TYR 11 1 Y 19 A O LEU 83 A O LEU 79 1 Y 19 B O TYR 341 B O TYR 11 1 Y 20 A O LEU 83 A O LEU 79 1 Y 20 B O TYR 341 B O TYR 11 1 Y 1 A A HG HE1 CYS TRP 61 75 1.26 4 A A HG HE1 CYS TRP 61 75 1.23 5 A A HG HE1 CYS TRP 61 75 1.34 6 A B OE1 HZ2 GLU LYS 66 337 1.55 8 A A HG HE1 CYS TRP 61 75 1.29 13 A A HG HE1 CYS TRP 61 75 1.30 15 A B OE1 HZ2 GLU LYS 66 337 1.54 17 A B OE1 HZ3 GLU LYS 66 337 1.53 18 A B OE2 HZ1 GLU LYS 66 337 1.52 20 A B OE1 HZ1 GLU LYS 66 337 1.54 1 A SER 10 63.34 120.97 1 A SER 14 55.17 101.09 1 A ASP 67 -87.54 34.72 1 A ALA 82 -141.24 -45.26 1 B VAL 335 -93.69 -125.12 1 B PRO 338 -67.39 -148.66 1 B ARG 340 -154.32 -36.11 2 A ARG 6 58.97 108.50 2 A ALA 12 62.74 121.24 2 A SER 14 -139.03 -42.66 2 A ALA 22 54.64 98.36 2 A PRO 27 -76.28 -81.93 2 A ARG 28 -162.76 -52.11 2 A ARG 30 -134.52 -35.23 2 A ASP 67 -87.62 34.17 2 A ALA 82 -131.75 -42.55 2 B M3L 336 53.74 169.09 2 B PRO 338 -78.83 -164.23 2 B ARG 340 -146.08 -54.48 3 A LEU 7 -134.58 -43.93 3 A LEU 15 70.08 -53.56 3 A THR 24 -147.92 -43.92 3 A PRO 27 -80.50 32.97 3 A ASP 67 -91.29 36.69 3 A ALA 82 68.19 -58.92 3 B THR 332 61.62 118.62 3 B VAL 335 46.91 -179.27 3 B ARG 340 -96.49 58.99 4 A LEU 7 69.62 -58.97 4 A SER 8 56.15 109.14 4 A SER 13 -137.10 -40.13 4 A LEU 15 71.24 -15.72 4 A ARG 30 -144.77 -37.45 4 A ASP 67 -88.45 33.16 4 B THR 332 62.02 119.46 4 B PRO 338 -63.53 -154.49 4 B ARG 340 -147.25 -41.05 5 A LEU 7 -131.03 -43.79 5 A SER 14 62.42 123.84 5 A SER 20 63.43 158.04 5 A ARG 30 -164.27 -37.93 5 A ASP 67 -90.28 34.88 5 B PRO 338 -76.06 -158.43 5 B ARG 340 -96.84 59.96 6 A SER 13 -125.43 -50.79 6 A SER 14 57.28 177.66 6 A ASP 67 -91.13 33.82 7 A ARG 28 56.02 80.29 7 A ARG 30 69.81 -29.40 7 A ASP 67 -90.61 35.68 7 B M3L 336 56.06 132.95 8 A SER 20 -146.43 -52.83 8 A ASP 67 -87.94 33.68 8 B VAL 335 -158.06 -71.52 8 B M3L 336 52.53 160.23 8 B PRO 338 -81.23 -154.91 8 B HIS 339 -63.86 -162.72 9 A ARG 6 62.18 119.58 9 A SER 13 -143.53 -48.68 9 A ALA 22 -138.90 -50.56 9 A SER 25 63.37 130.06 9 A ASP 67 -90.94 32.97 9 A ALA 82 -132.09 -42.04 9 B VAL 335 -104.62 -64.88 9 B M3L 336 59.57 153.23 9 B PRO 338 -83.82 -155.04 10 A LEU 7 63.43 125.54 10 A SER 8 63.37 145.08 10 A LEU 15 -135.09 -45.82 10 A THR 24 63.52 126.69 10 A ARG 28 -142.91 -49.36 10 A ASP 67 -94.48 39.71 10 A ALA 81 -78.43 -155.44 10 A ALA 82 72.82 -8.68 11 A THR 24 54.36 103.83 11 A ARG 30 72.53 -47.62 11 A ASP 67 -88.55 32.95 12 A LEU 15 -138.48 -51.08 12 A PRO 18 -78.01 47.32 12 A ARG 30 -120.04 -68.47 12 A ASP 67 -90.17 32.98 12 A ALA 82 67.54 133.76 12 B VAL 335 -120.64 -50.64 12 B M3L 336 55.80 160.36 12 B PRO 338 -79.09 -158.17 12 B ARG 340 42.08 103.97 13 A ARG 6 71.01 -47.00 13 A LEU 7 63.95 163.28 13 A LEU 15 -141.61 -55.19 13 A SER 20 63.05 117.88 13 A ALA 22 64.46 136.86 13 A ASP 67 -88.84 34.66 13 B THR 332 61.47 114.40 13 B M3L 336 56.75 136.60 13 B PRO 338 -76.40 -163.44 13 B ARG 340 56.21 -69.16 14 A SER 8 64.27 157.79 14 A SER 10 -136.96 -42.79 14 A SER 13 56.02 104.14 14 A SER 14 -142.27 -9.27 14 A SER 20 61.71 101.59 14 A ARG 30 -146.18 -44.14 14 A ASP 67 -88.87 34.73 14 B VAL 335 -101.44 -79.00 14 B ARG 340 56.70 78.72 15 A SER 8 69.37 -53.27 15 A LEU 15 -138.39 -45.83 15 A SER 20 62.26 158.95 15 A ASP 67 -90.60 34.08 15 B M3L 336 57.74 129.68 15 B PRO 338 -78.30 -162.69 15 B ARG 340 67.05 -61.65 16 A SER 8 -135.12 -44.92 16 A ARG 9 -132.69 -47.94 16 A SER 10 -134.72 -43.64 16 A SER 13 -131.25 -44.47 16 A SER 25 61.38 126.75 16 A ARG 30 -122.41 -63.00 16 A ASP 67 -85.21 33.07 16 A ALA 82 68.71 -32.42 16 B M3L 336 55.18 165.53 17 A SER 10 55.90 103.16 17 A ALA 12 -135.23 -45.14 17 A ALA 22 -136.56 -51.17 17 A ASP 67 -91.60 36.50 17 B M3L 336 53.71 156.19 17 B ARG 340 68.66 -56.10 18 A SER 14 60.16 114.28 18 A PRO 18 -71.59 -93.78 18 A PRO 23 -78.11 40.58 18 A THR 24 63.20 176.83 18 A SER 25 67.35 146.48 18 A ARG 30 -172.52 -166.64 18 A ASP 67 -87.31 32.32 18 B THR 332 -136.54 -42.50 18 B VAL 335 -138.38 -33.96 18 B M3L 336 54.71 -175.22 18 B PRO 338 -76.67 -157.33 18 B ARG 340 48.64 112.10 19 A SER 8 -93.49 57.68 19 A SER 14 58.71 107.47 19 A LEU 15 -133.02 -48.28 19 A ARG 28 -132.62 -48.48 19 A ARG 30 76.78 -19.27 19 A ASP 67 -90.34 32.30 19 A ALA 82 64.74 128.98 19 B VAL 335 46.78 -87.69 19 B M3L 336 57.01 157.27 19 B LYS 337 -145.26 49.89 19 B PRO 338 -77.39 -162.58 19 B ARG 340 38.40 102.85 20 A ARG 6 63.32 132.41 20 A ALA 22 58.93 111.50 20 A THR 42 -79.46 20.12 20 A ASP 67 -87.79 32.68 20 B M3L 336 53.77 161.66 PHD finger protein 1, H3K36me3 peptide The solution structure of human PHF1 in complex with H3K36me3 1 N N 2 N N covale 1.349 B VAL 335 B C VAL 5 1_555 B M3L 336 B N M3L 6 1_555 covale 1.337 B M3L 336 B C M3L 6 1_555 B LYS 337 B N LYS 7 1_555 PEPTIDE BINDING PROTEIN Tudor Domain, H3K36me3 binding, PEPTIDE BINDING PROTEIN PHF1_HUMAN UNP 1 6 O43189 RLSRSGASSLWDPASPAPTSGPRPRLWEGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWKDISPAAL 2M0O PDB 2 2M0O 6 83 2M0O 6 83 O43189 A 1 2 79 331 341 2M0O 331 341 2M0O B 2 1 11 1 EXPRESSION TAG SER 5 2M0O A O43189 UNP 1 4 anti-parallel anti-parallel anti-parallel A ASP 36 A ASP 32 A LEU 38 A LEU 34 A LEU 48 A LEU 44 A ASP 55 A ASP 51 A VAL 60 A VAL 56 A PHE 65 A PHE 61 A GLN 70 A GLN 66 A LEU 74 A LEU 70