1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Bhattacharya, S.
Ju, J.H.
Cowburn, D.
Bu, Z.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
425
2509
2528
10.1016/j.jmb.2013.04.001
23583913
Ligand-Induced Dynamic Changes in Extended PDZ Domains from NHERF1.
2013
10.2210/pdb2m0t/pdb
pdb_00002m0t
12822.609
Na(+)/H(+) exchange regulatory cofactor NHE-RF1
PDZ1 domain
1
man
polymer
NHERF-1, Ezrin-radixin-moesin-binding phosphoprotein 50, EBP50, Regulatory cofactor of Na(+)/H(+) exchanger, Sodium-hydrogen exchanger regulatory factor 1, Solute carrier family 9 isoform A3 regulatory factor 1
no
no
GIDPFTMLPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAAL
NAVRLLVVDPETDEQLQKLGVQVREELLRAQEAPGQA
GIDPFTMLPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAAL
NAVRLLVVDPETDEQLQKLGVQVREELLRAQEAPGQA
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
SLC9A3R1, NHERF, NHERF1
9606
Homo sapiens
562
Escherichia coli
Rosetta 2 (DE3)
plasmid
pET151/D-TOPO
database_2
pdbx_database_status
pdbx_nmr_software
pdbx_nmr_spectrometer
struct_ref_seq_dif
repository
Initial release
Database references
Database references
Database references
Data collection
Database references
Other
1
0
2013-04-24
1
1
2013-05-01
1
2
2013-06-26
1
3
2013-07-17
1
4
2023-06-14
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_nmr_data
_pdbx_nmr_software.name
_pdbx_nmr_spectrometer.model
_struct_ref_seq_dif.details
BMRB
Y
RCSB
2012-11-06
REL
REL
REL
REL
structures with the lowest energy
1000
20
2D 1H-15N HSQC
3D HNCACB
3D CBCA(CO)NH
3D HNCO
3D HNCA
2D 1H-13C HSQC aliphatic
2D 1H-13C HSQC aromatic
3D 1H-13C NOESY aliphatic
3D 1H-13C NOESY aromatic
3D 1H-15N NOESY
3D H(CCO)NH
3D HBHA(CO)NH
3D HCCH-COSY
3D HCCH-TOCSY
400
uM
[U-99% 13C; U-99% 15N]
20
mM
150
mM
0.5
mM
0.5
mM
150
7.5
ambient
288
K
simulated annealing
1
fewest violations
400 uM [U-99% 13C; U-99% 15N] PDZ1, 20 mM TRIS, 150 mM sodium chloride, 0.5 mM DTT, 0.5 mM EDTA, 90% H2O/10% D2O
90% H2O/10% D2O
Bruker Biospin
collection
TopSpin
2.1
Bruker Biospin
processing
TopSpin
2.1
Keller and Wuthrich
data analysis
CARA
1.5
Keller and Wuthrich
peak picking
CARA
1.5
Guntert, Mumenthaler and Wuthrich
structure solution
CYANA
2.1
Linge, O'Donoghue and Nilges
refinement
ARIA
2.2
Cornilescu, Delaglio and Bax
data analysis
TALOS
1.01
900
Bruker
AVANCE
Bruker Avance
800
Bruker
AVANCE
Bruker Avance
700
Bruker
AVANCE
Bruker Avance
600
Bruker
AVANCE
Bruker Avance
500
Bruker
AVANCE
Bruker Avance
GLY
4
n
1
GLY
4
A
ILE
5
n
2
ILE
5
A
ASP
6
n
3
ASP
6
A
PRO
7
n
4
PRO
7
A
PHE
8
n
5
PHE
8
A
THR
9
n
6
THR
9
A
MET
10
n
7
MET
10
A
LEU
11
n
8
LEU
11
A
PRO
12
n
9
PRO
12
A
ARG
13
n
10
ARG
13
A
LEU
14
n
11
LEU
14
A
CYS
15
n
12
CYS
15
A
CYS
16
n
13
CYS
16
A
LEU
17
n
14
LEU
17
A
GLU
18
n
15
GLU
18
A
LYS
19
n
16
LYS
19
A
GLY
20
n
17
GLY
20
A
PRO
21
n
18
PRO
21
A
ASN
22
n
19
ASN
22
A
GLY
23
n
20
GLY
23
A
TYR
24
n
21
TYR
24
A
GLY
25
n
22
GLY
25
A
PHE
26
n
23
PHE
26
A
HIS
27
n
24
HIS
27
A
LEU
28
n
25
LEU
28
A
HIS
29
n
26
HIS
29
A
GLY
30
n
27
GLY
30
A
GLU
31
n
28
GLU
31
A
LYS
32
n
29
LYS
32
A
GLY
33
n
30
GLY
33
A
LYS
34
n
31
LYS
34
A
LEU
35
n
32
LEU
35
A
GLY
36
n
33
GLY
36
A
GLN
37
n
34
GLN
37
A
TYR
38
n
35
TYR
38
A
ILE
39
n
36
ILE
39
A
ARG
40
n
37
ARG
40
A
LEU
41
n
38
LEU
41
A
VAL
42
n
39
VAL
42
A
GLU
43
n
40
GLU
43
A
PRO
44
n
41
PRO
44
A
GLY
45
n
42
GLY
45
A
SER
46
n
43
SER
46
A
PRO
47
n
44
PRO
47
A
ALA
48
n
45
ALA
48
A
GLU
49
n
46
GLU
49
A
LYS
50
n
47
LYS
50
A
ALA
51
n
48
ALA
51
A
GLY
52
n
49
GLY
52
A
LEU
53
n
50
LEU
53
A
LEU
54
n
51
LEU
54
A
ALA
55
n
52
ALA
55
A
GLY
56
n
53
GLY
56
A
ASP
57
n
54
ASP
57
A
ARG
58
n
55
ARG
58
A
LEU
59
n
56
LEU
59
A
VAL
60
n
57
VAL
60
A
GLU
61
n
58
GLU
61
A
VAL
62
n
59
VAL
62
A
ASN
63
n
60
ASN
63
A
GLY
64
n
61
GLY
64
A
GLU
65
n
62
GLU
65
A
ASN
66
n
63
ASN
66
A
VAL
67
n
64
VAL
67
A
GLU
68
n
65
GLU
68
A
LYS
69
n
66
LYS
69
A
GLU
70
n
67
GLU
70
A
THR
71
n
68
THR
71
A
HIS
72
n
69
HIS
72
A
GLN
73
n
70
GLN
73
A
GLN
74
n
71
GLN
74
A
VAL
75
n
72
VAL
75
A
VAL
76
n
73
VAL
76
A
SER
77
n
74
SER
77
A
ARG
78
n
75
ARG
78
A
ILE
79
n
76
ILE
79
A
ARG
80
n
77
ARG
80
A
ALA
81
n
78
ALA
81
A
ALA
82
n
79
ALA
82
A
LEU
83
n
80
LEU
83
A
ASN
84
n
81
ASN
84
A
ALA
85
n
82
ALA
85
A
VAL
86
n
83
VAL
86
A
ARG
87
n
84
ARG
87
A
LEU
88
n
85
LEU
88
A
LEU
89
n
86
LEU
89
A
VAL
90
n
87
VAL
90
A
VAL
91
n
88
VAL
91
A
ASP
92
n
89
ASP
92
A
PRO
93
n
90
PRO
93
A
GLU
94
n
91
GLU
94
A
THR
95
n
92
THR
95
A
ASP
96
n
93
ASP
96
A
GLU
97
n
94
GLU
97
A
GLN
98
n
95
GLN
98
A
LEU
99
n
96
LEU
99
A
GLN
100
n
97
GLN
100
A
LYS
101
n
98
LYS
101
A
LEU
102
n
99
LEU
102
A
GLY
103
n
100
GLY
103
A
VAL
104
n
101
VAL
104
A
GLN
105
n
102
GLN
105
A
VAL
106
n
103
VAL
106
A
ARG
107
n
104
ARG
107
A
GLU
108
n
105
GLU
108
A
GLU
109
n
106
GLU
109
A
LEU
110
n
107
LEU
110
A
LEU
111
n
108
LEU
111
A
ARG
112
n
109
ARG
112
A
ALA
113
n
110
ALA
113
A
GLN
114
n
111
GLN
114
A
GLU
115
n
112
GLU
115
A
ALA
116
n
113
ALA
116
A
PRO
117
n
114
PRO
117
A
GLY
118
n
115
GLY
118
A
GLN
119
n
116
GLN
119
A
ALA
120
n
117
ALA
120
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
CYS
15
A
N
CYS
12
A
O
LEU
88
A
O
LEU
85
A
O
LEU
89
A
O
LEU
86
A
N
VAL
60
A
N
VAL
57
A
O
LEU
59
A
O
LEU
56
A
N
GLN
37
A
N
GLN
34
A
O
ARG
40
A
O
ARG
37
A
N
HIS
27
A
N
HIS
24
A
N
CYS
15
A
N
CYS
12
A
O
LEU
88
A
O
LEU
85
A
O
LEU
89
A
O
LEU
86
A
N
VAL
60
A
N
VAL
57
A
N
VAL
62
A
N
VAL
59
A
O
GLU
65
A
O
GLU
62
2
A
A
HG3
HB
PRO
VAL
12
106
1.15
4
A
A
H
OD1
ILE
ASP
39
57
1.56
4
A
A
H
O
HIS
LEU
27
41
1.57
7
A
A
H
OE1
GLY
GLU
45
49
1.60
8
A
A
HG3
HB
PRO
VAL
12
106
1.06
10
A
A
H
O
ASN
ARG
63
87
1.59
11
A
A
HB3
HB
PRO
VAL
12
91
1.34
11
A
A
H
OE1
GLY
GLU
45
49
1.58
11
A
A
H
OE1
SER
GLU
46
49
1.58
15
A
A
OE1
HE
GLU
ARG
61
107
1.58
16
A
A
OE1
HZ2
GLU
LYS
18
50
1.58
16
A
A
OE2
HH21
GLU
ARG
108
112
1.59
17
A
A
HG3
HB
PRO
VAL
12
106
1.19
18
A
A
HG3
HB
PRO
VAL
12
106
1.32
19
A
A
HG3
HB
PRO
VAL
12
106
1.32
1
A
THR
9
-170.38
126.37
1
A
ALA
55
-66.06
95.71
1
A
ASN
63
68.61
-60.90
1
A
GLU
108
-165.86
-40.13
1
A
ALA
113
-74.27
46.08
1
A
ALA
116
62.10
94.56
1
A
PRO
117
-51.67
101.78
2
A
THR
9
-160.37
-43.51
2
A
LEU
83
-84.63
-70.74
2
A
GLU
108
-171.14
-47.29
2
A
ARG
112
-83.78
-81.22
2
A
ALA
113
-174.96
109.88
3
A
THR
9
-172.52
123.58
3
A
GLU
108
-167.26
-24.10
4
A
THR
9
-173.13
128.42
4
A
MET
10
73.54
-51.51
4
A
LEU
11
55.80
133.53
4
A
ASP
57
-105.76
-169.97
4
A
LEU
83
-63.17
-83.85
4
A
VAL
104
68.74
125.54
4
A
GLU
108
-165.62
-26.75
4
A
ALA
116
-162.25
100.22
4
A
GLN
119
74.26
-42.14
5
A
ASN
63
73.59
-43.65
5
A
LEU
83
-66.55
-73.39
5
A
GLU
108
-175.18
-34.98
6
A
LEU
35
-144.00
29.05
6
A
GLU
108
-178.19
-13.86
6
A
PRO
117
-57.56
99.13
6
A
GLN
119
71.11
-11.38
7
A
ASN
63
70.92
-61.20
7
A
GLU
70
-110.75
-165.26
7
A
LEU
83
-76.95
-74.49
7
A
GLU
108
-169.77
-11.72
8
A
THR
9
-171.03
134.72
8
A
PRO
44
-34.67
94.34
8
A
ALA
55
-55.19
99.71
8
A
GLU
108
-172.66
-21.06
8
A
GLU
115
-80.93
-81.63
8
A
GLN
119
-86.30
37.86
9
A
ALA
55
-68.05
92.87
9
A
VAL
104
67.00
146.85
9
A
GLU
108
179.99
-13.16
9
A
GLN
119
69.39
-72.44
10
A
THR
9
-170.63
123.43
10
A
LYS
34
37.83
-154.35
10
A
ASN
63
68.39
-58.25
10
A
GLN
105
-104.32
69.88
10
A
GLU
108
-174.59
-27.18
10
A
ALA
116
59.25
79.78
10
A
PRO
117
-60.25
95.73
11
A
THR
9
-172.00
133.74
11
A
MET
10
75.20
-60.58
11
A
LEU
11
51.91
132.91
11
A
GLU
31
64.16
-173.70
11
A
ASN
63
71.99
-24.00
11
A
GLU
70
-116.90
-164.24
11
A
GLU
108
-166.79
-10.16
11
A
GLN
119
-149.13
47.77
12
A
THR
9
-148.56
-45.52
12
A
SER
46
-119.64
-164.16
12
A
ALA
55
-67.44
94.46
12
A
LYS
69
-141.94
34.98
12
A
GLU
70
-110.56
-167.71
12
A
LEU
83
-75.55
-75.86
12
A
GLU
108
-158.81
-34.94
13
A
THR
9
-142.68
-98.49
13
A
LEU
11
76.36
160.09
13
A
TYR
24
-131.70
-42.07
13
A
LYS
32
-59.82
108.33
13
A
LEU
83
-90.05
-67.05
13
A
GLU
108
171.18
-41.26
13
A
ALA
116
61.77
80.19
14
A
THR
9
179.70
132.11
14
A
LYS
32
-61.12
98.78
14
A
VAL
67
-95.41
35.09
14
A
GLU
108
168.55
-50.22
14
A
ARG
112
-63.33
-72.62
14
A
ALA
113
-177.58
-70.03
14
A
ALA
116
65.49
92.17
14
A
PRO
117
-56.54
104.11
15
A
THR
9
175.96
142.74
15
A
LYS
19
-69.43
97.53
15
A
TYR
24
78.74
-38.57
15
A
ASN
63
72.90
-26.10
15
A
GLU
108
-162.13
-19.86
15
A
ALA
113
69.88
112.84
15
A
PRO
117
-55.19
104.72
15
A
GLN
119
-171.40
-173.26
16
A
THR
9
-173.71
126.58
16
A
MET
10
72.80
-71.00
16
A
LEU
11
65.74
156.89
16
A
LEU
83
-80.62
-71.15
16
A
GLU
108
-164.66
-22.81
16
A
ALA
116
61.51
70.11
16
A
GLN
119
-107.71
-87.57
17
A
THR
9
-170.42
127.52
17
A
GLU
31
64.16
172.30
17
A
LEU
35
-141.22
35.72
17
A
GLU
108
175.07
-23.69
17
A
GLN
119
-96.30
52.30
18
A
GLU
31
58.25
-169.30
18
A
ALA
55
-59.56
103.20
18
A
VAL
104
-85.09
41.43
18
A
GLU
108
171.65
-30.71
18
A
ALA
116
60.22
74.48
18
A
GLN
119
-92.26
-86.24
19
A
MET
10
62.74
65.54
19
A
VAL
104
-66.85
90.06
19
A
GLU
108
-179.68
-27.83
19
A
ARG
112
-96.83
-60.85
19
A
ALA
116
-177.96
72.38
20
A
THR
9
-172.16
101.98
20
A
MET
10
69.42
64.06
20
A
LEU
35
74.65
-50.32
20
A
ALA
55
-75.06
43.95
20
A
GLU
108
-161.25
-18.75
20
A
PRO
117
-69.71
90.69
Structural characterization of the extended PDZ1 domain from NHERF1
1
N
N
A
SER
46
A
SER
43
HELX_P
A
GLY
52
A
GLY
49
1
1
7
A
THR
71
A
THR
68
HELX_P
A
ARG
80
A
ARG
77
1
2
10
A
ASP
92
A
ASP
89
HELX_P
A
LYS
101
A
LYS
98
1
3
10
A
GLU
108
A
GLU
105
HELX_P
A
ALA
113
A
ALA
110
1
4
6
PROTEIN BINDING
PDZ domain, PROTEIN BINDING
NHRF1_HUMAN
UNP
1
11
O14745
LPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLV
VDPETDEQLQKLGVQVREELLRAQEAPGQA
11
120
2M0T
11
120
O14745
A
1
8
117
1
expression tag
GLY
4
2M0T
A
O14745
UNP
1
1
expression tag
ILE
5
2M0T
A
O14745
UNP
2
1
expression tag
ASP
6
2M0T
A
O14745
UNP
3
1
expression tag
PRO
7
2M0T
A
O14745
UNP
4
1
expression tag
PHE
8
2M0T
A
O14745
UNP
5
1
expression tag
THR
9
2M0T
A
O14745
UNP
6
1
expression tag
MET
10
2M0T
A
O14745
UNP
7
5
4
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ARG
13
A
ARG
10
A
GLU
18
A
GLU
15
A
ALA
85
A
ALA
82
A
VAL
91
A
VAL
88
A
ARG
58
A
ARG
55
A
VAL
62
A
VAL
59
A
GLN
37
A
GLN
34
A
VAL
42
A
VAL
39
A
PHE
26
A
PHE
23
A
GLY
30
A
GLY
27
A
ARG
13
A
ARG
10
A
GLU
18
A
GLU
15
A
ALA
85
A
ALA
82
A
VAL
91
A
VAL
88
A
ARG
58
A
ARG
55
A
VAL
62
A
VAL
59
A
GLU
65
A
GLU
62
A
ASN
66
A
ASN
63