1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Bhattacharya, S. Ju, J.H. Cowburn, D. Bu, Z. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK J.Mol.Biol. JMOBAK 0070 0022-2836 425 2509 2528 10.1016/j.jmb.2013.04.001 23583913 Ligand-Induced Dynamic Changes in Extended PDZ Domains from NHERF1. 2013 10.2210/pdb2m0u/pdb pdb_00002m0u 12822.609 Na(+)/H(+) exchange regulatory cofactor NHE-RF1 1 man polymer 632.687 C-terminal CFTR peptide 1 syn polymer NHERF-1, Ezrin-radixin-moesin-binding phosphoprotein 50, EBP50, Regulatory cofactor of Na(+)/H(+) exchanger, Sodium-hydrogen exchanger regulatory factor 1, Solute carrier family 9 isoform A3 regulatory factor 1 no no GIDPFTMLPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAAL NAVRLLVVDPETDEQLQKLGVQVREELLRAQEAPGQA GIDPFTMLPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAAL NAVRLLVVDPETDEQLQKLGVQVREELLRAQEAPGQA A polypeptide(L) no no QDTRL QDTRL B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample SLC9A3R1, NHERF, NHERF1 9606 Homo sapiens 562 Escherichia coli Rosetta 2 (DE3) plasmid pET151/D-TOPO database_2 pdbx_database_status pdbx_nmr_software pdbx_nmr_spectrometer struct_ref_seq_dif repository Initial release Database references Database references Database references Data collection Database references Other 1 0 2013-04-24 1 1 2013-05-01 1 2 2013-06-26 1 3 2013-07-17 1 4 2023-06-14 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.status_code_nmr_data _pdbx_nmr_software.name _pdbx_nmr_spectrometer.model _struct_ref_seq_dif.details BMRB Y RCSB 2012-11-06 REL REL REL REL structures with the lowest energy 1000 20 2D 1H-15N HSQC 2D 1H-13C HSQC aliphatic 2D 1H-13C HSQC aromatic 3D 1H-15N NOESY 3D 1H-13C NOESY aliphatic 3D 1H-13C NOESY aromatic 3D HNCA 3D CBCA(CO)NH 3D HBHA(CO)NH 3D HNCACB 3D HNCO 3D HCCH-TOCSY 4D 13C,15N NOESY 4D 13C,13C NOESY aliphatic 2D 13C,15N f1,f2-filtered NOESY 2D 13C,15N f2-filtered NOESY 286 uM [U-99% 13C; U-99% 15N] 20 mM 150 mM 0.5 mM 0.5 mM 275 uM 150 7.5 ambient 288 K simulated annealing 1 fewest violations 286 uM [U-99% 13C; U-99% 15N] PDZ1, 20 mM TRIS, 150 mM sodium chloride, 0.5 mM DTT, 0.5 mM EDTA, 275 uM CFTR, 90% H2O/10% D2O 90% H2O/10% D2O Bruker Biospin collection TopSpin 2.1 Bruker Biospin processing TopSpin 2.1 Keller and Wuthrich data analysis CARA 1.5 Keller and Wuthrich peak picking CARA 1.5 Guntert, Mumenthaler and Wuthrich structure solution CYANA 2.1 Linge, O'Donoghue and Nilges refinement ARIA 2.2 Cornilescu, Delaglio and Bax data analysis TALOS 1.01 900 Bruker AVANCE Bruker Avance 800 Bruker AVANCE Bruker Avance 700 Bruker AVANCE Bruker Avance 500 Bruker AVANCE Bruker Avance GLY 4 n 1 GLY 4 A ILE 5 n 2 ILE 5 A ASP 6 n 3 ASP 6 A PRO 7 n 4 PRO 7 A PHE 8 n 5 PHE 8 A THR 9 n 6 THR 9 A MET 10 n 7 MET 10 A LEU 11 n 8 LEU 11 A PRO 12 n 9 PRO 12 A ARG 13 n 10 ARG 13 A LEU 14 n 11 LEU 14 A CYS 15 n 12 CYS 15 A CYS 16 n 13 CYS 16 A LEU 17 n 14 LEU 17 A GLU 18 n 15 GLU 18 A LYS 19 n 16 LYS 19 A GLY 20 n 17 GLY 20 A PRO 21 n 18 PRO 21 A ASN 22 n 19 ASN 22 A GLY 23 n 20 GLY 23 A TYR 24 n 21 TYR 24 A GLY 25 n 22 GLY 25 A PHE 26 n 23 PHE 26 A HIS 27 n 24 HIS 27 A LEU 28 n 25 LEU 28 A HIS 29 n 26 HIS 29 A GLY 30 n 27 GLY 30 A GLU 31 n 28 GLU 31 A LYS 32 n 29 LYS 32 A GLY 33 n 30 GLY 33 A LYS 34 n 31 LYS 34 A LEU 35 n 32 LEU 35 A GLY 36 n 33 GLY 36 A GLN 37 n 34 GLN 37 A TYR 38 n 35 TYR 38 A ILE 39 n 36 ILE 39 A ARG 40 n 37 ARG 40 A LEU 41 n 38 LEU 41 A VAL 42 n 39 VAL 42 A GLU 43 n 40 GLU 43 A PRO 44 n 41 PRO 44 A GLY 45 n 42 GLY 45 A SER 46 n 43 SER 46 A PRO 47 n 44 PRO 47 A ALA 48 n 45 ALA 48 A GLU 49 n 46 GLU 49 A LYS 50 n 47 LYS 50 A ALA 51 n 48 ALA 51 A GLY 52 n 49 GLY 52 A LEU 53 n 50 LEU 53 A LEU 54 n 51 LEU 54 A ALA 55 n 52 ALA 55 A GLY 56 n 53 GLY 56 A ASP 57 n 54 ASP 57 A ARG 58 n 55 ARG 58 A LEU 59 n 56 LEU 59 A VAL 60 n 57 VAL 60 A GLU 61 n 58 GLU 61 A VAL 62 n 59 VAL 62 A ASN 63 n 60 ASN 63 A GLY 64 n 61 GLY 64 A GLU 65 n 62 GLU 65 A ASN 66 n 63 ASN 66 A VAL 67 n 64 VAL 67 A GLU 68 n 65 GLU 68 A LYS 69 n 66 LYS 69 A GLU 70 n 67 GLU 70 A THR 71 n 68 THR 71 A HIS 72 n 69 HIS 72 A GLN 73 n 70 GLN 73 A GLN 74 n 71 GLN 74 A VAL 75 n 72 VAL 75 A VAL 76 n 73 VAL 76 A SER 77 n 74 SER 77 A ARG 78 n 75 ARG 78 A ILE 79 n 76 ILE 79 A ARG 80 n 77 ARG 80 A ALA 81 n 78 ALA 81 A ALA 82 n 79 ALA 82 A LEU 83 n 80 LEU 83 A ASN 84 n 81 ASN 84 A ALA 85 n 82 ALA 85 A VAL 86 n 83 VAL 86 A ARG 87 n 84 ARG 87 A LEU 88 n 85 LEU 88 A LEU 89 n 86 LEU 89 A VAL 90 n 87 VAL 90 A VAL 91 n 88 VAL 91 A ASP 92 n 89 ASP 92 A PRO 93 n 90 PRO 93 A GLU 94 n 91 GLU 94 A THR 95 n 92 THR 95 A ASP 96 n 93 ASP 96 A GLU 97 n 94 GLU 97 A GLN 98 n 95 GLN 98 A LEU 99 n 96 LEU 99 A GLN 100 n 97 GLN 100 A LYS 101 n 98 LYS 101 A LEU 102 n 99 LEU 102 A GLY 103 n 100 GLY 103 A VAL 104 n 101 VAL 104 A GLN 105 n 102 GLN 105 A VAL 106 n 103 VAL 106 A ARG 107 n 104 ARG 107 A GLU 108 n 105 GLU 108 A GLU 109 n 106 GLU 109 A LEU 110 n 107 LEU 110 A LEU 111 n 108 LEU 111 A ARG 112 n 109 ARG 112 A ALA 113 n 110 ALA 113 A GLN 114 n 111 GLN 114 A GLU 115 n 112 GLU 115 A ALA 116 n 113 ALA 116 A PRO 117 n 114 PRO 117 A GLY 118 n 115 GLY 118 A GLN 119 n 116 GLN 119 A ALA 120 n 117 ALA 120 A GLN 1 n 1 GLN 1 B ASP 2 n 2 ASP 2 B THR 3 n 3 THR 3 B ARG 4 n 4 ARG 4 B LEU 5 n 5 LEU 5 B author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N CYS 15 A N CYS 12 A O LEU 88 A O LEU 85 A O VAL 91 A O VAL 88 A N ARG 58 A N ARG 55 A N VAL 62 A N VAL 59 A O GLU 65 A O GLU 62 A O LEU 41 A O LEU 38 A N HIS 27 A N HIS 24 A N LEU 28 A N LEU 25 B O THR 3 B O THR 3 3 A B HD1 OD2 HIS ASP 27 2 1.59 4 A A OD2 HG1 ASP THR 92 95 1.55 5 A B HH21 OD2 ARG ASP 40 2 1.59 8 A B HD1 OD1 HIS ASP 27 2 1.60 9 A A HB2 HG21 MET THR 10 95 1.33 9 A B H OXT GLY LEU 25 5 1.59 10 A B HD1 OD1 HIS ASP 27 2 1.57 10 A B HE2 OD2 HIS ASP 29 2 1.58 11 A A HD23 HZ2 LEU LYS 35 69 1.32 11 A B H OXT GLY LEU 25 5 1.58 12 A A OE1 HH21 GLU ARG 70 78 1.58 13 A A HB3 HG12 MET VAL 10 106 1.20 13 A A HZ3 HA2 LYS GLY 19 23 1.33 14 A A OE1 HZ1 GLU LYS 18 50 1.57 14 A A OE2 HZ1 GLU LYS 68 69 1.60 16 A A HB3 HG22 MET THR 10 95 1.34 17 A A HB3 HA GLU ASN 61 66 1.22 18 A A HB3 HG21 MET THR 10 95 1.32 19 A B HD1 OD1 HIS ASP 27 2 1.59 20 A B HE2 OD1 HIS ASP 72 2 1.58 1 A PRO 7 -68.92 -174.49 1 A MET 10 -170.81 68.63 1 A LEU 11 -146.11 59.41 1 A ASN 22 -147.26 25.15 1 A LYS 34 -141.14 -71.05 1 A ALA 55 -83.24 38.19 1 A ASN 84 -108.73 -63.36 1 A GLU 108 -146.15 -27.79 1 A ALA 113 -76.51 -154.65 1 B ASP 2 64.24 -170.88 2 A THR 9 -128.69 -164.90 2 A MET 10 74.33 -66.11 2 A LEU 11 55.06 85.08 2 A ASN 22 -157.02 33.48 2 A LYS 32 -61.94 96.48 2 A ASN 84 -131.65 -58.51 2 A GLN 105 73.06 -50.14 2 A GLU 108 174.36 -33.30 2 A GLU 115 76.54 120.10 2 B ASP 2 63.57 80.80 3 A ASN 22 -150.86 33.32 3 A LYS 34 -123.72 -67.56 3 A ASN 84 -145.48 -34.92 3 A GLU 108 -146.66 -26.38 3 A ALA 113 -45.23 108.09 3 A GLU 115 65.46 120.31 3 A GLN 119 -170.14 -7.99 4 A MET 10 71.55 -74.55 4 A LEU 11 59.15 93.29 4 A LYS 32 74.68 -21.65 4 A ASN 84 -144.13 -52.32 4 A GLU 108 -143.85 -50.78 5 A MET 10 76.27 -57.35 5 A LEU 11 58.86 79.96 5 A LYS 32 -67.96 93.29 5 A ALA 55 -81.26 44.56 5 A LEU 83 -82.04 -70.76 5 A GLU 108 -121.87 -57.44 5 A ALA 113 66.25 169.90 5 B ASP 2 70.34 126.65 6 A LYS 34 -118.21 -70.33 6 A ASN 84 -142.49 -48.25 6 A GLN 105 -93.68 46.32 7 A ASN 22 -154.60 25.41 7 A LYS 34 -125.07 -60.35 7 A ASN 63 66.42 -69.56 7 A ASN 84 74.95 -58.74 7 A GLN 105 -99.62 31.44 7 A GLU 108 -132.36 -46.04 8 A LYS 34 -135.20 -71.83 8 A ASN 84 -133.15 -60.89 8 A GLU 108 -127.63 -59.10 8 A ALA 113 63.99 174.24 9 A MET 10 71.53 -48.98 9 A LEU 11 62.33 84.23 9 A ASN 22 -141.51 26.44 9 A ALA 55 -83.66 37.38 9 A ASN 84 71.83 -60.49 9 A GLN 105 -82.22 31.59 9 A GLU 108 -141.24 -9.88 9 A ARG 112 -106.14 54.65 9 B ASP 2 -88.95 -78.55 10 A PRO 7 -59.42 171.14 10 A LYS 32 72.16 -52.36 10 A LYS 34 -139.22 -73.95 10 A ASN 84 -158.01 -62.72 10 A GLU 108 -149.83 -41.32 10 A ALA 116 65.84 82.91 10 B ASP 2 74.64 121.92 11 A ILE 5 52.20 173.39 11 A PRO 7 -75.46 23.34 11 A MET 10 -169.84 -94.86 11 A LEU 11 52.50 72.07 11 A ASN 22 -140.39 22.87 11 A LYS 32 88.25 -46.77 11 A LYS 34 -103.49 -63.35 11 A ASN 84 -141.04 -67.29 11 A GLU 108 -161.62 -40.66 11 A ARG 112 -80.41 48.09 11 A ALA 113 -107.26 75.58 11 A GLN 119 -161.63 100.11 11 B ASP 2 -88.51 -151.03 12 A MET 10 -177.43 24.52 12 A LYS 34 -126.20 -67.40 12 A ASN 63 67.29 -69.79 12 A ASN 84 -145.66 -48.91 12 A GLU 108 -133.37 -33.65 12 A ALA 113 73.24 128.95 12 B ASP 2 69.69 145.82 13 A THR 9 -89.08 -116.64 13 A LEU 11 -152.38 57.77 13 A ASN 22 -152.41 46.97 13 A LYS 34 -134.90 -60.25 13 A ASN 63 73.19 -39.51 13 A LEU 83 71.77 -17.72 13 A ASN 84 -149.32 -54.37 13 A LEU 102 -110.33 -80.12 13 A GLN 105 72.93 -42.24 13 A GLU 108 -164.18 -38.22 13 A ALA 116 56.53 70.67 14 A LYS 34 -133.43 -67.11 14 A ALA 55 -84.03 43.97 14 A ASN 84 -136.04 -47.75 14 A GLU 108 -108.03 -60.93 14 A ALA 113 66.81 175.70 14 A GLU 115 63.37 111.27 14 A PRO 117 -58.78 96.70 15 A ILE 5 45.11 -168.54 15 A PRO 7 -57.86 172.93 15 A MET 10 75.01 -56.77 15 A LEU 11 67.90 98.92 15 A ASN 22 -149.16 20.50 15 A LEU 83 -81.26 -72.35 15 A LEU 102 -71.41 -84.70 15 A GLU 108 -148.06 -22.53 15 A GLU 115 67.10 122.57 16 A ILE 5 47.04 -174.31 16 A PRO 7 -65.42 27.44 16 A PHE 8 55.96 -92.06 16 A THR 9 51.66 167.49 16 A LYS 34 -108.77 -63.21 16 A ASN 63 68.25 -25.64 16 A ASN 84 -145.68 -53.99 16 A LEU 102 -62.66 -73.29 16 A GLU 108 -137.44 -58.03 16 A ALA 113 67.58 128.40 17 A PHE 8 50.04 76.24 17 A MET 10 58.33 72.24 17 A LYS 34 -117.21 -71.75 17 A ALA 55 -65.57 83.84 17 A ASN 63 65.34 -73.02 17 A ASN 84 -171.66 -48.39 17 A GLU 108 -155.61 -32.57 17 B ASP 2 -107.93 -167.47 18 A ASN 22 -155.43 30.56 18 A LYS 32 -170.54 -73.56 18 A LYS 34 -95.31 -68.38 18 A ASN 84 -148.06 -65.22 18 A GLN 105 34.52 62.93 18 A ALA 116 54.93 88.67 18 A PRO 117 -66.62 78.74 19 A LEU 11 -152.71 63.78 19 A LYS 19 -58.96 101.23 19 A ASN 22 -147.78 34.28 19 A LYS 32 55.48 135.98 19 A LYS 34 -124.46 -51.87 19 A ASN 63 67.55 -67.79 19 A ASN 84 -123.97 -60.15 19 A ARG 112 -110.41 52.98 19 A ALA 113 -79.18 21.07 19 A GLU 115 67.77 146.02 19 A ALA 116 53.62 71.24 20 A MET 10 161.49 -25.30 20 A LEU 11 -58.70 105.41 20 A ASN 22 -140.84 42.99 20 A LYS 34 -107.28 -69.88 20 A ALA 55 -87.73 40.96 20 A LEU 83 71.62 -81.63 20 A GLU 108 -163.29 -49.29 20 A ALA 113 -152.88 34.40 20 A GLU 115 62.08 95.23 20 B ASP 2 -111.54 -147.72 Complex structure of C-terminal CFTR peptide and extended PDZ1 domain from NHERF1 1 N N 2 N N A SER 46 A SER 43 HELX_P A ALA 51 A ALA 48 1 1 6 A THR 71 A THR 68 HELX_P A ALA 81 A ALA 78 1 2 11 A ASP 92 A ASP 89 HELX_P A GLY 103 A GLY 100 1 3 12 PEPTIDE BINDING PROTEIN/PROTEIN BINDING PDZ domain, PEPTIDE BINDING PROTEIN-PROTEIN BINDING complex NHRF1_HUMAN UNP 1 11 O14745 LPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLV VDPETDEQLQKLGVQVREELLRAQEAPGQA 2M0U PDB 2 2M0U 11 120 2M0U 11 120 O14745 A 1 8 117 1 5 2M0U 1 5 2M0U B 2 1 5 1 expression tag GLY 4 2M0U A O14745 UNP 1 1 expression tag ILE 5 2M0U A O14745 UNP 2 1 expression tag ASP 6 2M0U A O14745 UNP 3 1 expression tag PRO 7 2M0U A O14745 UNP 4 1 expression tag PHE 8 2M0U A O14745 UNP 5 1 expression tag THR 9 2M0U A O14745 UNP 6 1 expression tag MET 10 2M0U A O14745 UNP 7 4 3 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A ARG 13 A ARG 10 A GLU 18 A GLU 15 A ALA 85 A ALA 82 A VAL 91 A VAL 88 A ARG 58 A ARG 55 A VAL 62 A VAL 59 A GLU 65 A GLU 62 A ASN 66 A ASN 63 A GLN 37 A GLN 34 A VAL 42 A VAL 39 A PHE 26 A PHE 23 A GLY 30 A GLY 27 B THR 3 B THR 3 B ARG 4 B ARG 4