1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Bhattacharya, S.
Ju, J.H.
Cowburn, D.
Bu, Z.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
425
2509
2528
10.1016/j.jmb.2013.04.001
23583913
Ligand-Induced Dynamic Changes in Extended PDZ Domains from NHERF1.
2013
14100.970
Na(+)/H(+) exchange regulatory cofactor NHE-RF1
PDZ2 domain
1
man
polymer
632.687
C-terminal CFTR peptide
1
syn
polymer
NHERF-1, Ezrin-radixin-moesin-binding phosphoprotein 50, EBP50, Regulatory cofactor of Na(+)/H(+) exchanger, Sodium-hydrogen exchanger regulatory factor 1, Solute carrier family 9 isoform A3 regulatory factor 1
no
no
GIDPFTMLRPRLCTMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAG
GDETKLLVVDRETDEFFKKCRVIPSQEHLNGPLPVPFTNGEIQKENSR
GIDPFTMLRPRLCTMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAG
GDETKLLVVDRETDEFFKKCRVIPSQEHLNGPLPVPFTNGEIQKENSR
A
polypeptide(L)
no
no
QDTRL
QDTRL
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
SLC9A3R1, NHERF, NHERF1
9606
Homo sapiens
562
Escherichia coli
Rosetta 2 (DE3)
plasmid
pET151/D-TOPO
repository
Initial release
Database references
Database references
Database references
1
0
2013-04-24
1
1
2013-05-01
1
2
2013-06-26
1
3
2013-07-17
BMRB
Y
RCSB
2012-11-06
REL
REL
REL
structures with the lowest energy
1000
20
2D 1H-15N HSQC
2D 1H-13C HSQC aliphatic
2D 1H-13C HSQC aromatic
3D 1H-15N NOESY
3D 1H-13C NOESY aliphatic
3D 1H-13C NOESY aromatic
3D HNCA
3D CBCA(CO)NH
3D HBHA(CO)NH
3D HNCACB
3D HNCO
3D H(CCO)NH
3D HCCH-TOCSY
2D 13C,15N f1,f2-filtered TOCSY
2D 13C,15N f1,f2-filtered NOESY
2D 13C,15N f2-filtered NOESY
3D 13C,15N f1-filtered 13C-edited NOESY-HSQC
3D 13C,15N f1-filtered 15N-edited NOESY-HSQC
400
uM
[U-99% 13C; U-99% 15N]
20
mM
150
mM
0.5
mM
0.5
mM
688
uM
200
uM
[U-99% 13C; U-99% 15N]
20
mM
150
mM
0.5
mM
0.5
mM
275
uM
150
7.5
ambient
288
K
simulated annealing
1
fewest violations
400 uM [U-99% 13C; U-99% 15N] PDZ2, 20 mM TRIS, 150 mM sodium chloride, 0.5 mM DTT, 0.5 mM EDTA, 688 uM CFTR, 90% H2O/10% D2O
90% H2O/10% D2O
200 uM [U-99% 13C; U-99% 15N] PDZ2, 20 mM TRIS, 150 mM sodium chloride, 0.5 mM DTT, 0.5 mM EDTA, 275 uM CFTR, 90% H2O/10% D2O
90% H2O/10% D2O
Bruker Biospin
collection
TOPSPIN
2.1
Bruker Biospin
processing
TOPSPIN
2.1
Keller and Wuthrich
data analysis
CARA
1.5
Keller and Wuthrich
peak picking
CARA
1.5
Guntert, Mumenthaler and Wuthrich
structure solution
CYANA
2.1
Linge, O'Donoghue and Nilges
refinement
ARIA
2.2
Cornilescu, Delaglio and Bax
data analysis
TALOS
1.01
900
Bruker
Avance
Bruker Avance
800
Bruker
Avance
Bruker Avance
700
Bruker
Avance
Bruker Avance
600
Bruker
Avance
Bruker Avance
500
Bruker
Avance
Bruker Avance
GLY
143
n
1
GLY
143
A
ILE
144
n
2
ILE
144
A
ASP
145
n
3
ASP
145
A
PRO
146
n
4
PRO
146
A
PHE
147
n
5
PHE
147
A
THR
148
n
6
THR
148
A
MET
149
n
7
MET
149
A
LEU
150
n
8
LEU
150
A
ARG
151
n
9
ARG
151
A
PRO
152
n
10
PRO
152
A
ARG
153
n
11
ARG
153
A
LEU
154
n
12
LEU
154
A
CYS
155
n
13
CYS
155
A
THR
156
n
14
THR
156
A
MET
157
n
15
MET
157
A
LYS
158
n
16
LYS
158
A
LYS
159
n
17
LYS
159
A
GLY
160
n
18
GLY
160
A
PRO
161
n
19
PRO
161
A
SER
162
n
20
SER
162
A
GLY
163
n
21
GLY
163
A
TYR
164
n
22
TYR
164
A
GLY
165
n
23
GLY
165
A
PHE
166
n
24
PHE
166
A
ASN
167
n
25
ASN
167
A
LEU
168
n
26
LEU
168
A
HIS
169
n
27
HIS
169
A
SER
170
n
28
SER
170
A
ASP
171
n
29
ASP
171
A
LYS
172
n
30
LYS
172
A
SER
173
n
31
SER
173
A
LYS
174
n
32
LYS
174
A
PRO
175
n
33
PRO
175
A
GLY
176
n
34
GLY
176
A
GLN
177
n
35
GLN
177
A
PHE
178
n
36
PHE
178
A
ILE
179
n
37
ILE
179
A
ARG
180
n
38
ARG
180
A
SER
181
n
39
SER
181
A
VAL
182
n
40
VAL
182
A
ASP
183
n
41
ASP
183
A
PRO
184
n
42
PRO
184
A
ASP
185
n
43
ASP
185
A
SER
186
n
44
SER
186
A
PRO
187
n
45
PRO
187
A
ALA
188
n
46
ALA
188
A
GLU
189
n
47
GLU
189
A
ALA
190
n
48
ALA
190
A
SER
191
n
49
SER
191
A
GLY
192
n
50
GLY
192
A
LEU
193
n
51
LEU
193
A
ARG
194
n
52
ARG
194
A
ALA
195
n
53
ALA
195
A
GLN
196
n
54
GLN
196
A
ASP
197
n
55
ASP
197
A
ARG
198
n
56
ARG
198
A
ILE
199
n
57
ILE
199
A
VAL
200
n
58
VAL
200
A
GLU
201
n
59
GLU
201
A
VAL
202
n
60
VAL
202
A
ASN
203
n
61
ASN
203
A
GLY
204
n
62
GLY
204
A
VAL
205
n
63
VAL
205
A
CYS
206
n
64
CYS
206
A
MET
207
n
65
MET
207
A
GLU
208
n
66
GLU
208
A
GLY
209
n
67
GLY
209
A
LYS
210
n
68
LYS
210
A
GLN
211
n
69
GLN
211
A
HIS
212
n
70
HIS
212
A
GLY
213
n
71
GLY
213
A
ASP
214
n
72
ASP
214
A
VAL
215
n
73
VAL
215
A
VAL
216
n
74
VAL
216
A
SER
217
n
75
SER
217
A
ALA
218
n
76
ALA
218
A
ILE
219
n
77
ILE
219
A
ARG
220
n
78
ARG
220
A
ALA
221
n
79
ALA
221
A
GLY
222
n
80
GLY
222
A
GLY
223
n
81
GLY
223
A
ASP
224
n
82
ASP
224
A
GLU
225
n
83
GLU
225
A
THR
226
n
84
THR
226
A
LYS
227
n
85
LYS
227
A
LEU
228
n
86
LEU
228
A
LEU
229
n
87
LEU
229
A
VAL
230
n
88
VAL
230
A
VAL
231
n
89
VAL
231
A
ASP
232
n
90
ASP
232
A
ARG
233
n
91
ARG
233
A
GLU
234
n
92
GLU
234
A
THR
235
n
93
THR
235
A
ASP
236
n
94
ASP
236
A
GLU
237
n
95
GLU
237
A
PHE
238
n
96
PHE
238
A
PHE
239
n
97
PHE
239
A
LYS
240
n
98
LYS
240
A
LYS
241
n
99
LYS
241
A
CYS
242
n
100
CYS
242
A
ARG
243
n
101
ARG
243
A
VAL
244
n
102
VAL
244
A
ILE
245
n
103
ILE
245
A
PRO
246
n
104
PRO
246
A
SER
247
n
105
SER
247
A
GLN
248
n
106
GLN
248
A
GLU
249
n
107
GLU
249
A
HIS
250
n
108
HIS
250
A
LEU
251
n
109
LEU
251
A
ASN
252
n
110
ASN
252
A
GLY
253
n
111
GLY
253
A
PRO
254
n
112
PRO
254
A
LEU
255
n
113
LEU
255
A
PRO
256
n
114
PRO
256
A
VAL
257
n
115
VAL
257
A
PRO
258
n
116
PRO
258
A
PHE
259
n
117
PHE
259
A
THR
260
n
118
THR
260
A
ASN
261
n
119
ASN
261
A
GLY
262
n
120
GLY
262
A
GLU
263
n
121
GLU
263
A
ILE
264
n
122
ILE
264
A
GLN
265
n
123
GLN
265
A
LYS
266
n
124
LYS
266
A
GLU
267
n
125
GLU
267
A
ASN
268
n
126
ASN
268
A
SER
269
n
127
SER
269
A
ARG
270
n
128
ARG
270
A
GLN
1
n
1
GLN
1
B
ASP
2
n
2
ASP
2
B
THR
3
n
3
THR
3
B
ARG
4
n
4
ARG
4
B
LEU
5
n
5
LEU
5
B
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
CYS
155
A
N
CYS
13
A
O
LEU
228
A
O
LEU
86
A
O
LEU
229
A
O
LEU
87
A
N
GLU
201
A
N
GLU
59
A
N
VAL
202
A
N
VAL
60
A
O
VAL
205
A
O
VAL
63
A
O
ARG
180
A
O
ARG
38
A
N
ASN
167
A
N
ASN
25
A
N
LEU
168
A
N
LEU
26
B
O
THR
3
B
O
THR
3
1
A
A
OE2
HG
GLU
CYS
201
206
1.55
5
A
B
HD1
OD1
HIS
ASP
169
2
1.58
10
A
A
OD2
HZ3
ASP
LYS
171
174
1.56
11
A
A
HG3
HG13
GLN
VAL
177
215
1.35
12
A
A
HA2
HE22
GLY
GLN
204
248
1.33
12
A
A
HZ3
OE2
LYS
GLU
158
225
1.59
15
A
A
OD1
HG
ASP
SER
171
173
1.57
17
A
A
OD2
HZ2
ASP
LYS
236
240
1.57
20
A
A
OE2
HZ3
GLU
LYS
234
266
1.59
1
A
PRO
161
-87.49
-80.06
1
A
LYS
172
-95.79
47.49
1
A
SER
173
-162.84
-48.43
1
A
PRO
246
-69.26
60.72
1
A
THR
260
-71.24
39.51
1
A
SER
269
70.87
169.45
1
B
ASP
2
61.80
-173.72
2
A
PHE
147
-88.14
45.00
2
A
SER
162
-152.66
22.80
2
A
ASP
185
-100.12
70.00
2
A
MET
207
-97.75
51.33
2
A
THR
260
-103.26
63.97
2
A
LYS
266
60.96
90.83
2
A
GLU
267
70.06
96.36
3
A
SER
162
-144.49
35.77
3
A
GLN
196
76.92
-8.82
3
A
VAL
257
63.67
134.47
3
A
ASN
261
76.13
-21.40
3
A
ASN
268
63.73
91.63
4
A
ARG
151
68.54
127.63
4
A
PRO
161
-70.95
-75.04
4
A
ASP
185
-107.43
72.23
4
A
GLU
208
-77.15
47.27
4
A
PHE
259
-108.34
77.41
4
B
ASP
2
70.46
-179.67
5
A
SER
162
-148.14
28.24
5
A
ASP
185
-105.84
71.68
5
A
MET
207
-90.40
47.11
5
A
VAL
257
62.42
82.75
5
B
ASP
2
-62.88
-81.33
6
A
PRO
161
-74.67
-74.82
6
A
ASP
185
-110.88
71.27
6
A
GLN
196
76.35
-7.02
6
A
THR
260
-106.36
45.48
6
B
ASP
2
68.23
-179.70
7
A
SER
162
-161.60
28.72
7
A
ASP
185
-108.57
65.44
7
A
GLN
196
77.42
-2.80
7
A
MET
207
-81.31
31.16
7
A
LYS
210
65.03
-50.18
7
A
PRO
256
-63.40
86.64
7
A
THR
260
-106.34
78.63
7
A
GLU
267
71.51
133.15
7
A
ASN
268
69.59
-68.67
7
A
SER
269
53.02
79.89
8
A
PRO
161
-62.01
-73.45
8
A
SER
162
-154.39
34.33
8
A
ALA
195
-79.26
25.90
8
A
MET
207
-94.90
44.93
8
A
GLU
208
-84.33
-93.38
8
A
VAL
257
61.13
158.76
8
A
THR
260
-90.05
32.04
8
A
GLU
263
-89.84
-157.49
8
A
ILE
264
-68.54
96.78
9
A
PHE
147
-91.71
38.09
9
A
MET
149
43.68
94.70
9
A
LEU
150
-67.65
-83.23
9
A
ARG
151
64.05
149.02
9
A
SER
162
-147.54
21.28
9
A
PRO
256
-77.61
-155.70
9
A
PRO
258
-64.58
-163.27
9
A
ASN
261
79.83
-3.74
9
B
ASP
2
64.42
-176.39
10
A
SER
162
-151.27
14.14
10
A
ASP
185
-104.69
73.84
10
A
GLN
196
79.45
-2.02
10
A
ASN
203
45.78
25.15
10
A
GLU
208
-61.00
98.29
10
A
VAL
257
69.82
98.86
10
A
THR
260
72.79
173.77
10
A
ASN
261
77.95
-11.98
10
B
ASP
2
57.97
-103.15
11
A
MET
149
-103.90
76.30
11
A
LEU
150
-81.67
-83.59
11
A
ARG
151
66.93
135.31
11
A
PRO
161
-68.60
-71.08
11
A
LYS
172
-95.09
59.28
11
A
SER
173
-169.55
-65.13
11
A
ALA
195
-77.47
20.94
11
A
THR
260
72.50
-74.63
11
A
ASN
261
69.14
-21.79
11
A
ASN
268
-117.61
73.99
12
A
SER
162
-141.41
27.03
12
B
ASP
2
-69.57
-77.25
13
A
SER
162
-153.80
31.97
13
A
ASP
185
-119.47
71.98
13
A
ASN
203
69.61
-59.27
13
A
MET
207
-110.58
74.36
13
A
LYS
210
-117.83
-73.02
13
A
THR
260
-105.09
77.87
13
B
ASP
2
55.15
-163.94
14
A
ASP
145
-114.42
75.92
14
A
LEU
150
-59.25
-78.79
14
A
ARG
151
65.07
158.06
14
A
SER
162
-158.61
21.02
14
A
GLU
208
-68.88
91.08
14
A
PRO
246
-67.19
61.41
14
A
PHE
259
-140.40
11.55
14
A
THR
260
63.85
86.30
15
A
LEU
150
-69.90
-79.52
15
A
ARG
151
63.93
129.32
15
A
SER
162
-160.22
25.31
15
A
LYS
172
-88.19
38.97
15
A
SER
173
-150.65
-33.59
15
A
ASN
261
76.63
-9.01
15
A
GLU
267
67.75
143.80
16
A
SER
162
-158.49
38.57
16
A
ASP
185
-98.66
32.54
16
A
GLU
208
-91.81
31.54
16
A
LYS
210
62.76
-59.21
16
A
PHE
259
-86.18
35.35
16
A
ILE
264
-114.99
63.58
16
A
ASN
268
63.28
99.08
16
B
ASP
2
-81.73
-83.20
17
A
LEU
150
-96.33
-95.68
17
A
ARG
151
64.35
132.72
17
A
SER
162
-150.16
70.07
17
A
SER
173
-151.47
-39.29
17
A
ASP
185
-103.87
68.01
17
A
GLN
196
75.98
-11.37
17
A
MET
207
-99.24
33.07
17
A
VAL
257
56.84
86.70
17
A
THR
260
67.95
166.88
17
A
ASN
261
77.42
-23.28
17
A
LYS
266
-103.54
65.51
17
A
ASN
268
-161.19
96.73
18
A
ILE
144
68.29
99.56
18
A
PHE
147
-90.05
31.78
18
A
LEU
150
-78.11
-84.91
18
A
ARG
151
63.32
152.76
18
A
PRO
161
-70.08
-88.24
18
A
GLN
196
73.53
-0.77
18
A
MET
207
-99.74
33.87
18
A
ILE
245
64.01
127.18
18
B
ASP
2
62.11
-168.30
19
A
SER
162
-149.11
38.11
19
A
GLU
208
-89.10
-76.77
19
A
PRO
246
-69.25
59.57
19
A
PRO
258
-58.81
106.93
19
A
PHE
259
-85.28
41.17
19
A
THR
260
-116.89
62.85
19
A
SER
269
63.32
79.86
20
A
GLN
196
74.61
-3.53
20
A
PHE
259
-92.12
50.67
20
A
THR
260
57.42
-96.03
20
A
ASN
261
70.04
-43.49
Na(+)/H(+) exchange regulatory cofactor NHE-RF1, C-terminal CFTR peptide
Complex structure of C-terminal CFTR peptide and extended PDZ2 domain from NHERF1
1
N
N
2
N
N
A
SER
186
A
SER
44
HELX_P
A
SER
191
A
SER
49
1
1
6
A
GLN
211
A
GLN
69
HELX_P
A
ALA
221
A
ALA
79
1
2
11
A
ASP
232
A
ASP
90
HELX_P
A
CYS
242
A
CYS
100
1
3
11
A
SER
247
A
SER
105
HELX_P
A
GLY
253
A
GLY
111
1
4
7
PROTEIN BINDING/PROTEIN BINDING
PDZ domain, PROTEIN BINDING-PROTEIN BINDING complex
NHRF1_HUMAN
UNP
1
150
O14745
LRPRLCTMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLL
VVDRETDEFFKKCRVIPSQEHLNGPLPVPFTNGEIQKENSR
2M0V
PDB
2
2M0V
150
270
2M0V
150
270
O14745
A
1
8
128
1
5
2M0V
1
5
2M0V
B
2
1
5
1
EXPRESSION TAG
GLY
143
2M0V
A
O14745
UNP
1
1
EXPRESSION TAG
ILE
144
2M0V
A
O14745
UNP
2
1
EXPRESSION TAG
ASP
145
2M0V
A
O14745
UNP
3
1
EXPRESSION TAG
PRO
146
2M0V
A
O14745
UNP
4
1
EXPRESSION TAG
PHE
147
2M0V
A
O14745
UNP
5
1
EXPRESSION TAG
THR
148
2M0V
A
O14745
UNP
6
1
EXPRESSION TAG
MET
149
2M0V
A
O14745
UNP
7
4
3
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ARG
153
A
ARG
11
A
LYS
158
A
LYS
16
A
GLU
225
A
GLU
83
A
VAL
231
A
VAL
89
A
ARG
198
A
ARG
56
A
VAL
202
A
VAL
60
A
VAL
205
A
VAL
63
A
CYS
206
A
CYS
64
A
PHE
178
A
PHE
36
A
VAL
182
A
VAL
40
A
PHE
166
A
PHE
24
A
HIS
169
A
HIS
27
B
THR
3
B
THR
3
B
ARG
4
B
ARG
4