1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Kowal, E.A. Lad, R. Pallan, P.S. Muffly, E. Wawrzak, Z. Egli, M. Sturla, S.J. Stone, M.P. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C16 H17 N2 O7 P 380.289 1-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-1H-perimidin-2(3H)-one DNA linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking N 1 N O N 2 N P N 3 N O N 4 N O N 5 N C N 6 R C N 7 N O N 8 S C N 9 N O N 10 N C N 11 R C N 12 N N N 13 N C N 14 N O N 15 N N Y 16 N C Y 17 N C Y 18 N C Y 19 N C Y 20 N C Y 21 N C Y 22 N C Y 23 N C Y 24 N C Y 25 N C N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N H N 42 N O N 43 N H N 44 N O N 45 N P N 46 N O N 47 N O N 48 N O N 49 N C N 50 R C N 51 N O N 52 S C N 53 N O N 54 N C N 55 R C Y 56 N N Y 57 N C Y 58 N N Y 59 N C Y 60 N C N 61 N N Y 62 N N Y 63 N C Y 64 N N Y 65 N C N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N O N 81 N P N 82 N O N 83 N O N 84 N O N 85 N C N 86 R C N 87 N O N 88 S C N 89 N O N 90 N C N 91 R C N 92 N N N 93 N C N 94 N O N 95 N N N 96 N C N 97 N N N 98 N C N 99 N C N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N O N 115 N P N 116 N O N 117 N O N 118 N O N 119 N C N 120 R C N 121 N O N 122 S C N 123 N O N 124 N C N 125 R C Y 126 N N Y 127 N C Y 128 N N Y 129 N C N 130 N C N 131 N O N 132 N N N 133 N C N 134 N N N 135 N N Y 136 N C N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N O N 152 N P N 153 N O N 154 N O N 155 N O N 156 N C N 157 R C N 158 N O N 159 S C N 160 N O N 161 N C N 162 R C N 163 N N N 164 N C N 165 N O N 166 N N N 167 N C N 168 N O N 169 N C N 170 N C N 171 N C N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing Y 11 N doub Y 12 N sing Y 13 N sing N 14 N sing N 15 N sing Y 16 N doub N 17 N sing Y 18 N doub Y 19 N sing Y 20 N sing Y 21 N sing Y 22 N doub Y 23 N doub N 24 N sing Y 25 N sing N 26 N sing N 27 N doub N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N doub N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing Y 70 N sing Y 71 N sing Y 72 N doub N 73 N sing Y 74 N sing Y 75 N sing Y 76 N doub N 77 N sing Y 78 N doub N 79 N sing N 80 N sing Y 81 N sing Y 82 N doub N 83 N sing Y 84 N sing N 85 N sing N 86 N sing N 87 N doub N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N doub N 111 N sing N 112 N doub N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N doub N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N doub N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing Y 143 N sing Y 144 N sing Y 145 N doub N 146 N sing Y 147 N sing N 148 N sing Y 149 N doub N 150 N doub N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N doub N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N doub N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N doub N 185 N sing N 186 N sing N 187 N sing N 188 N doub N 189 N sing N 190 N sing N 191 N doub N 192 N sing N 193 N sing N 194 N sing N 195 N sing UK Nucleic Acids Res. NARHAD 0389 0305-1048 41 7566 7576 10.1093/nar/gkt488 23748954 Recognition of O6-benzyl-2'-deoxyguanosine by a perimidinone-derived synthetic nucleoside: a DNA interstrand stacking interaction. 2013 10.2210/pdb2m11/pdb pdb_00002m11 10.13018/BMR18835 3736.484 DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(D3N)P*GP*CP*G)-3') 2 syn polymer no yes (DC)(DG)(DC)(DG)(DA)(DA)(DT)(DT)(D3N)(DG)(DC)(DG) CGCGAATTXGCG A,B polydeoxyribonucleotide n n n n n n n n n n n n 3.197 1 19 A 1 B 24 0.151 A_DC1:DG24_B 1 -11.931 0.266 0.156 -0.099 8.829 1 19 A 2 B 23 0.399 A_DG2:DC23_B 2 -4.561 -0.536 0.148 -0.138 10.200 1 19 A 3 B 22 -0.416 A_DC3:DG22_B 3 -12.162 0.323 0.046 -0.099 -4.167 1 20 A 5 B 20 -0.001 A_DA5:DT20_B 4 -18.094 0.100 -0.287 -0.026 -1.576 1 20 A 6 B 19 -0.113 A_DA6:DT19_B 5 -13.364 0.116 0.035 -0.014 0.455 1 20 A 7 B 18 -0.525 A_DT7:DA18_B 6 -13.067 -0.127 0.024 -0.009 2.902 1 20 A 8 B 17 0.434 A_DT8:DA17_B 7 -18.685 -0.141 -0.267 -0.025 -10.144 1 19 A 10 B 15 -0.753 A_DG10:DC15_B 8 -12.477 -0.336 0.030 -0.107 -9.765 1 19 A 11 B 14 -0.543 A_DC11:DG14_B 9 -4.862 0.513 0.178 -0.136 -4.517 1 19 A 12 B 13 -0.450 A_DG12:DC13_B 10 -16.354 -0.258 0.152 -0.090 2.440 26.637 A A 1 2 24.713 B B 24 23 3.066 11.046 -0.515 -0.938 AA_DC1DG2:DC23DG24_BB 1 -1.603 3.586 24.224 -4.590 0.748 3.184 35.803 A A 2 3 6.797 B B 23 22 3.227 4.169 0.750 -0.335 AA_DG2DC3:DG22DC23_BB 2 0.796 -1.297 35.559 -1.135 -1.108 5.905 67.718 A A 3 5 18.016 B B 22 20 6.648 19.845 -0.898 -2.015 AA_DC3DA5:DT20DG22_BB 3 -1.137 1.032 65.070 -3.302 0.720 3.064 33.801 A A 5 6 8.243 B B 20 19 3.178 4.769 -0.324 -0.730 AA_DA5DA6:DT19DT20_BB 4 -3.557 6.147 33.288 -1.997 0.005 3.242 29.643 A A 6 7 1.103 B B 19 18 3.262 0.564 0.002 -1.036 AA_DA6DT7:DA18DT19_BB 5 -0.015 0.030 29.638 -2.143 -0.007 3.104 33.368 A A 7 8 7.175 B B 18 17 3.191 4.102 0.405 -0.741 AA_DT7DT8:DA17DA18_BB 6 3.665 -6.411 32.924 -1.950 -0.116 5.849 67.450 A A 8 10 18.172 B B 17 15 6.617 19.942 0.842 -2.079 AA_DT8DG10:DC15DA17_BB 7 1.288 -1.174 64.759 -3.377 -0.661 3.214 35.745 A A 10 11 5.885 B B 15 14 3.248 3.606 -0.752 -0.451 AA_DG10DC11:DG14DC15_BB 8 -1.379 2.251 35.543 -1.250 1.028 2.406 29.201 A A 11 12 25.733 B B 14 13 3.041 12.554 0.514 -0.900 AA_DC11DG12:DC13DG14_BB 9 2.245 -4.601 26.323 -4.182 -0.590 chem_comp_atom chem_comp_bond database_2 pdbx_nmr_software pdbx_nmr_spectrometer struct_conn repository Initial release Database references Database references Data collection Database references Derived calculations 1 0 2013-06-12 1 1 2013-07-03 1 2 2013-09-11 1 3 2024-05-01 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _pdbx_nmr_spectrometer.model _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id BMRB Y RCSB 2012-11-09 REL REL REL 153 back calculated data agree with experimental NOESY spectrum 10 10 2D 1H-1H NOESY 2D 1H-1H COSY 2D 1H-1H NOESY 0.53 mM 100 mM 50 uM 10 mM 0.53 mM 10 mM 50 uM 100 mM 100 7.0 ambient 283 K 100 7.0 ambient 278 K simulated annealing 1 minimized average structure 0.53 mM 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP)[D3N]P-D(*GP*CP*GP)-3', 100 mM sodium chloride, 50 uM EDTA, 10 mM sodium phosphate, 100% D2O 100% D2O 0.53 mM 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP)[D3N]P-D(*GP*CP*GP)-3', 10 mM sodium phosphate, 50 uM EDTA, 100 mM sodium chloride, 90% H2O/10% D2O 90% H2O/10% D2O Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman refinement Amber Bruker Biospin collection TopSpin Bruker Biospin processing TopSpin Thomas L. James data analysis CORMA Ravishankar, G. et al. data analysis Curves 5.3 Thomas L. James processing MARDIGRAS Goddard chemical shift assignment Sparky Goddard chemical shift calculation Sparky 800 Bruker AVANCE Bruker Avance 600 Bruker AVANCE Bruker Avance DC 1 n 1 DC 1 A DG 2 n 2 DG 2 A DC 3 n 3 DC 3 A DG 4 n 4 DG 4 A DA 5 n 5 DA 5 A DA 6 n 6 DA 6 A DT 7 n 7 DT 7 A DT 8 n 8 DT 8 A D3N 9 n 9 D3N 9 A DG 10 n 10 DG 10 A DC 11 n 11 DC 11 A DG 12 n 12 DG 12 A DC 13 n 1 DC 13 B DG 14 n 2 DG 14 B DC 15 n 3 DC 15 B DG 16 n 4 DG 16 B DA 17 n 5 DA 17 B DA 18 n 6 DA 18 B DT 19 n 7 DT 19 B DT 20 n 8 DT 20 B D3N 21 n 9 D3N 21 B DG 22 n 10 DG 22 B DC 23 n 11 DC 23 B DG 24 n 12 DG 24 B author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 6 A DG 2 0.056 SIDE CHAIN 7 B DG 14 0.067 SIDE CHAIN 8 A DG 2 0.076 SIDE CHAIN 9 A DG 2 0.053 SIDE CHAIN 10 A DG 2 0.072 SIDE CHAIN 10 B DG 14 0.060 SIDE CHAIN 1 4.96 0.30 108.30 113.26 A A A O4' C1' N1 DC DC DC 1 1 1 N 1 -5.23 0.70 121.90 116.67 A A A N3 C2 O2 DC DC DC 1 1 1 N 1 26.25 2.50 111.00 137.25 A A A O5' C5' C4' DG DG DG 2 2 2 N 1 22.52 1.60 120.90 143.42 A A A P O5' C5' DG DG DG 2 2 2 N 1 5.06 0.30 108.30 113.36 A A A O4' C1' N1 DC DC DC 3 3 3 N 1 -5.22 0.70 121.90 116.68 A A A N3 C2 O2 DC DC DC 3 3 3 N 1 1.93 0.30 108.30 110.23 A A A O4' C1' N9 DG DG DG 4 4 4 N 1 1.94 0.30 108.30 110.24 A A A O4' C1' N9 DA DA DA 5 5 5 N 1 -3.11 0.50 117.00 113.89 A A A C4 C5 C6 DA DA DA 5 5 5 N 1 3.51 0.50 117.70 121.21 A A A C5 C6 N1 DA DA DA 5 5 5 N 1 -4.72 0.60 118.60 113.88 A A A N1 C6 N6 DA DA DA 5 5 5 N 1 3.28 0.50 117.70 120.98 A A A C5 C6 N1 DA DA DA 6 6 6 N 1 -4.87 0.60 118.60 113.73 A A A N1 C6 N6 DA DA DA 6 6 6 N 1 2.15 0.30 108.30 110.45 A A A O4' C1' N1 DT DT DT 7 7 7 N 1 -3.92 0.60 122.30 118.38 A A A N3 C2 O2 DT DT DT 7 7 7 N 1 2.37 0.30 108.30 110.67 A A A O4' C1' N1 DT DT DT 8 8 8 N 1 -4.02 0.60 122.30 118.28 A A A N3 C2 O2 DT DT DT 8 8 8 N 1 -3.62 0.60 122.90 119.28 A A A C6 C5 C7 DT DT DT 8 8 8 N 1 2.90 0.30 108.30 111.20 A A A O4' C1' N9 DG DG DG 10 10 10 N 1 3.76 0.60 118.90 122.66 A A A N1 C2 O2 DC DC DC 11 11 11 N 1 -5.36 0.70 121.90 116.54 A A A N3 C2 O2 DC DC DC 11 11 11 N 1 3.56 0.30 108.30 111.86 A A A O4' C1' N9 DG DG DG 12 12 12 N 1 2.84 0.30 108.30 111.14 B B B O4' C1' N1 DC DC DC 13 13 13 N 1 -5.06 0.70 121.90 116.84 B B B N3 C2 O2 DC DC DC 13 13 13 N 1 4.94 0.30 108.30 113.24 B B B O4' C1' N1 DC DC DC 15 15 15 N 1 3.89 0.60 118.90 122.79 B B B N1 C2 O2 DC DC DC 15 15 15 N 1 -5.16 0.70 121.90 116.74 B B B N3 C2 O2 DC DC DC 15 15 15 N 1 1.91 0.30 108.30 110.21 B B B O4' C1' N9 DG DG DG 16 16 16 N 1 2.01 0.30 108.30 110.31 B B B O4' C1' N9 DA DA DA 17 17 17 N 1 -3.26 0.50 117.00 113.74 B B B C4 C5 C6 DA DA DA 17 17 17 N 1 3.33 0.50 117.70 121.03 B B B C5 C6 N1 DA DA DA 17 17 17 N 1 -4.64 0.60 118.60 113.96 B B B N1 C6 N6 DA DA DA 17 17 17 N 1 -3.16 0.50 117.00 113.84 B B B C4 C5 C6 DA DA DA 18 18 18 N 1 3.54 0.50 117.70 121.24 B B B C5 C6 N1 DA DA DA 18 18 18 N 1 -4.64 0.60 118.60 113.96 B B B N1 C6 N6 DA DA DA 18 18 18 N 1 2.40 0.30 108.30 110.70 B B B O4' C1' N1 DT DT DT 19 19 19 N 1 -4.06 0.60 122.30 118.24 B B B N3 C2 O2 DT DT DT 19 19 19 N 1 2.39 0.30 108.30 110.69 B B B O4' C1' N1 DT DT DT 20 20 20 N 1 -4.22 0.60 122.30 118.08 B B B N3 C2 O2 DT DT DT 20 20 20 N 1 2.52 0.30 108.30 110.82 B B B O4' C1' N9 DG DG DG 22 22 22 N 1 -5.14 0.70 121.90 116.76 B B B N3 C2 O2 DC DC DC 23 23 23 N 1 4.25 0.30 108.30 112.55 B B B O4' C1' N9 DG DG DG 24 24 24 N 2 4.78 0.30 108.30 113.08 A A A O4' C1' N1 DC DC DC 1 1 1 N 2 -5.12 0.70 121.90 116.78 A A A N3 C2 O2 DC DC DC 1 1 1 N 2 -4.01 0.60 119.90 115.89 A A A N1 C6 O6 DG DG DG 2 2 2 N 2 5.86 0.30 108.30 114.16 A A A O4' C1' N1 DC DC DC 3 3 3 N 2 3.78 0.60 118.90 122.68 A A A N1 C2 O2 DC DC DC 3 3 3 N 2 -5.57 0.70 121.90 116.33 A A A N3 C2 O2 DC DC DC 3 3 3 N 2 2.95 0.30 108.30 111.25 A A A O4' C1' N9 DG DG DG 4 4 4 N 2 -3.66 0.60 119.90 116.24 A A A N1 C6 O6 DG DG DG 4 4 4 N 2 2.04 0.30 108.30 110.34 A A A O4' C1' N9 DA DA DA 5 5 5 N 2 3.02 0.50 110.60 113.62 A A A C2 N3 C4 DA DA DA 5 5 5 N 2 3.35 0.50 117.70 121.05 A A A C5 C6 N1 DA DA DA 5 5 5 N 2 -5.03 0.60 118.60 113.57 A A A N1 C6 N6 DA DA DA 5 5 5 N 2 3.48 0.50 117.70 121.18 A A A C5 C6 N1 DA DA DA 6 6 6 N 2 -5.82 0.60 118.60 112.78 A A A N1 C6 N6 DA DA DA 6 6 6 N 2 -4.20 0.60 122.30 118.10 A A A N3 C2 O2 DT DT DT 7 7 7 N 2 2.44 0.30 108.30 110.74 A A A O4' C1' N9 DG DG DG 10 10 10 N 2 -5.17 0.70 121.90 116.73 A A A N3 C2 O2 DC DC DC 11 11 11 N 2 3.64 0.30 108.30 111.94 A A A O4' C1' N9 DG DG DG 12 12 12 N 2 -4.10 0.60 119.90 115.80 A A A N1 C6 O6 DG DG DG 12 12 12 N 2 2.60 0.30 108.30 110.90 B B B O4' C1' N1 DC DC DC 13 13 13 N 2 4.44 0.60 118.90 123.34 B B B N1 C2 O2 DC DC DC 13 13 13 N 2 -6.33 0.70 121.90 115.57 B B B N3 C2 O2 DC DC DC 13 13 13 N 2 2.33 0.30 108.30 110.63 B B B O4' C1' N9 DG DG DG 14 14 14 N 2 5.40 0.30 108.30 113.70 B B B O4' C1' N1 DC DC DC 15 15 15 N 2 3.64 0.60 118.90 122.54 B B B N1 C2 O2 DC DC DC 15 15 15 N 2 -5.00 0.70 121.90 116.90 B B B N3 C2 O2 DC DC DC 15 15 15 N 2 1.99 0.30 108.30 110.29 B B B O4' C1' N9 DG DG DG 16 16 16 N 2 3.47 0.50 117.70 121.17 B B B C5 C6 N1 DA DA DA 17 17 17 N 2 -5.18 0.60 118.60 113.42 B B B N1 C6 N6 DA DA DA 17 17 17 N 2 3.31 0.50 117.70 121.01 B B B C5 C6 N1 DA DA DA 18 18 18 N 2 -4.76 0.60 122.30 117.54 B B B N3 C2 O2 DT DT DT 19 19 19 N 2 -4.28 0.60 122.30 118.02 B B B N3 C2 O2 DT DT DT 20 20 20 N 2 2.93 0.30 108.30 111.23 B B B O4' C1' N9 DG DG DG 22 22 22 N 2 2.08 0.30 108.30 110.38 B B B O4' C1' N1 DC DC DC 23 23 23 N 2 -6.16 0.70 121.90 115.74 B B B N3 C2 O2 DC DC DC 23 23 23 N 2 5.47 0.30 108.30 113.77 B B B O4' C1' N9 DG DG DG 24 24 24 N 3 2.60 0.30 108.30 110.90 A A A O4' C1' N1 DC DC DC 1 1 1 N 3 -4.66 0.70 121.90 117.24 A A A N3 C2 O2 DC DC DC 1 1 1 N 3 -4.11 0.60 119.90 115.79 A A A N1 C6 O6 DG DG DG 2 2 2 N 3 5.55 0.30 108.30 113.85 A A A O4' C1' N1 DC DC DC 3 3 3 N 3 3.84 0.60 118.90 122.74 A A A N1 C2 O2 DC DC DC 3 3 3 N 3 -5.00 0.70 121.90 116.90 A A A N3 C2 O2 DC DC DC 3 3 3 N 3 2.01 0.30 108.30 110.31 A A A O4' C1' N9 DG DG DG 4 4 4 N 3 -3.68 0.50 117.00 113.32 A A A C4 C5 C6 DA DA DA 5 5 5 N 3 4.53 0.50 117.70 122.23 A A A C5 C6 N1 DA DA DA 5 5 5 N 3 -5.65 0.60 118.60 112.95 A A A N1 C6 N6 DA DA DA 5 5 5 N 3 3.55 0.50 117.70 121.25 A A A C5 C6 N1 DA DA DA 6 6 6 N 3 -4.91 0.60 118.60 113.69 A A A N1 C6 N6 DA DA DA 6 6 6 N 3 2.45 0.30 108.30 110.75 A A A O4' C1' N1 DT DT DT 7 7 7 N 3 -5.39 0.60 122.30 116.91 A A A N3 C2 O2 DT DT DT 7 7 7 N 3 2.23 0.30 108.30 110.53 A A A O4' C1' N1 DT DT DT 8 8 8 N 3 3.50 0.30 108.30 111.80 A A A O4' C1' N9 DG DG DG 10 10 10 N 3 4.58 0.60 118.90 123.48 A A A N1 C2 O2 DC DC DC 11 11 11 N 3 -6.81 0.70 121.90 115.09 A A A N3 C2 O2 DC DC DC 11 11 11 N 3 4.70 0.30 108.30 113.00 A A A O4' C1' N9 DG DG DG 12 12 12 N 3 2.61 0.30 108.30 110.91 B B B O4' C1' N1 DC DC DC 13 13 13 N 3 4.21 0.60 118.90 123.11 B B B N1 C2 O2 DC DC DC 13 13 13 N 3 -5.89 0.70 121.90 116.01 B B B N3 C2 O2 DC DC DC 13 13 13 N 3 5.72 0.30 108.30 114.02 B B B O4' C1' N1 DC DC DC 15 15 15 N 3 3.71 0.60 118.90 122.61 B B B N1 C2 O2 DC DC DC 15 15 15 N 3 -4.98 0.70 121.90 116.92 B B B N3 C2 O2 DC DC DC 15 15 15 N 3 2.67 0.30 108.30 110.97 B B B O4' C1' N9 DA DA DA 17 17 17 N 3 -3.04 0.50 117.00 113.96 B B B C4 C5 C6 DA DA DA 17 17 17 N 3 3.91 0.50 117.70 121.61 B B B C5 C6 N1 DA DA DA 17 17 17 N 3 -5.07 0.60 118.60 113.53 B B B N1 C6 N6 DA DA DA 17 17 17 N 3 -3.76 0.50 117.00 113.24 B B B C4 C5 C6 DA DA DA 18 18 18 N 3 4.16 0.50 117.70 121.86 B B B C5 C6 N1 DA DA DA 18 18 18 N 3 -4.88 0.60 118.60 113.72 B B B N1 C6 N6 DA DA DA 18 18 18 N 3 -3.63 0.60 122.30 118.67 B B B N3 C2 O2 DT DT DT 19 19 19 N 3 -3.90 0.60 122.90 119.00 B B B C6 C5 C7 DT DT DT 19 19 19 N 3 2.35 0.30 108.30 110.65 B B B O4' C1' N1 DT DT DT 20 20 20 N 3 -4.93 0.60 122.30 117.37 B B B N3 C2 O2 DT DT DT 20 20 20 N 3 2.63 0.30 108.30 110.93 B B B O4' C1' N9 DG DG DG 22 22 22 N 3 -5.41 0.70 121.90 116.49 B B B N3 C2 O2 DC DC DC 23 23 23 N 3 3.65 0.30 108.30 111.95 B B B O4' C1' N9 DG DG DG 24 24 24 N 4 3.22 0.30 108.30 111.52 A A A O4' C1' N1 DC DC DC 1 1 1 N 4 5.19 0.60 118.90 124.09 A A A N1 C2 O2 DC DC DC 1 1 1 N 4 -6.67 0.70 121.90 115.23 A A A N3 C2 O2 DC DC DC 1 1 1 N 4 4.40 0.30 108.30 112.70 A A A O4' C1' N1 DC DC DC 3 3 3 N 4 -4.76 0.70 121.90 117.14 A A A N3 C2 O2 DC DC DC 3 3 3 N 4 2.24 0.30 108.30 110.54 A A A O4' C1' N9 DG DG DG 4 4 4 N 4 2.53 0.30 108.30 110.83 A A A O4' C1' N9 DA DA DA 5 5 5 N 4 -4.47 0.60 118.60 114.13 A A A N1 C6 N6 DA DA DA 5 5 5 N 4 -4.39 0.60 118.60 114.21 A A A N1 C6 N6 DA DA DA 6 6 6 N 4 -3.67 0.60 123.70 120.03 A A A C5 C6 N1 DT DT DT 7 7 7 N 4 -3.66 0.60 122.30 118.64 A A A N3 C2 O2 DT DT DT 7 7 7 N 4 2.33 0.30 108.30 110.63 A A A O4' C1' N1 DT DT DT 8 8 8 N 4 -5.46 0.60 122.30 116.84 A A A N3 C2 O2 DT DT DT 8 8 8 N 4 2.53 0.30 108.30 110.83 A A A O4' C1' N9 DG DG DG 10 10 10 N 4 -4.88 0.70 121.90 117.02 A A A N3 C2 O2 DC DC DC 11 11 11 N 4 2.26 0.30 108.30 110.56 A A A O4' C1' N9 DG DG DG 12 12 12 N 4 -5.40 0.70 121.90 116.50 B B B N3 C2 O2 DC DC DC 13 13 13 N 4 2.31 0.30 108.30 110.61 B B B O4' C1' N9 DG DG DG 14 14 14 N 4 4.05 0.30 108.30 112.35 B B B O4' C1' N1 DC DC DC 15 15 15 N 4 3.98 0.60 118.90 122.88 B B B N1 C2 O2 DC DC DC 15 15 15 N 4 -5.00 0.70 121.90 116.90 B B B N3 C2 O2 DC DC DC 15 15 15 N 4 2.71 0.30 108.30 111.01 B B B O4' C1' N9 DG DG DG 16 16 16 N 4 2.63 0.30 108.30 110.93 B B B O4' C1' N9 DA DA DA 17 17 17 N 4 -3.09 0.50 117.00 113.91 B B B C4 C5 C6 DA DA DA 17 17 17 N 4 3.23 0.50 117.70 120.93 B B B C5 C6 N1 DA DA DA 17 17 17 N 4 -3.93 0.60 118.60 114.67 B B B N1 C6 N6 DA DA DA 17 17 17 N 4 -3.74 0.50 117.00 113.26 B B B C4 C5 C6 DA DA DA 18 18 18 N 4 4.01 0.50 117.70 121.71 B B B C5 C6 N1 DA DA DA 18 18 18 N 4 -5.45 0.60 118.60 113.15 B B B N1 C6 N6 DA DA DA 18 18 18 N 4 3.31 0.30 108.30 111.61 B B B O4' C1' N1 DT DT DT 19 19 19 N 4 -4.75 0.60 122.30 117.55 B B B N3 C2 O2 DT DT DT 19 19 19 N 4 -4.43 0.60 122.90 118.47 B B B C6 C5 C7 DT DT DT 19 19 19 N 4 2.33 0.30 108.30 110.63 B B B O4' C1' N1 DT DT DT 20 20 20 N 4 -3.92 0.60 123.70 119.78 B B B C5 C6 N1 DT DT DT 20 20 20 N 4 -4.09 0.60 122.30 118.21 B B B N3 C2 O2 DT DT DT 20 20 20 N 4 -3.73 0.60 122.90 119.17 B B B C6 C5 C7 DT DT DT 20 20 20 N 4 2.79 0.30 108.30 111.09 B B B O4' C1' N9 DG DG DG 22 22 22 N 4 1.95 0.30 108.30 110.25 B B B O4' C1' N1 DC DC DC 23 23 23 N 4 4.22 0.60 118.90 123.12 B B B N1 C2 O2 DC DC DC 23 23 23 N 4 -6.66 0.70 121.90 115.24 B B B N3 C2 O2 DC DC DC 23 23 23 N 4 2.73 0.30 108.30 111.03 B B B O4' C1' N9 DG DG DG 24 24 24 N 5 3.26 0.30 108.30 111.56 A A A O4' C1' N1 DC DC DC 1 1 1 N 5 -4.47 0.70 121.90 117.43 A A A N3 C2 O2 DC DC DC 1 1 1 N 5 7.45 1.20 119.70 127.15 A A A C3' O3' P DC DC DG 1 1 2 Y 5 3.45 0.30 108.30 111.75 A A A O4' C1' N1 DC DC DC 3 3 3 N 5 -5.26 0.70 121.90 116.64 A A A N3 C2 O2 DC DC DC 3 3 3 N 5 -3.91 0.60 119.90 115.99 A A A N1 C6 O6 DG DG DG 4 4 4 N 5 3.04 0.50 117.70 120.74 A A A C5 C6 N1 DA DA DA 5 5 5 N 5 4.66 0.60 106.00 110.66 A A A O4' C4' C3' DA DA DA 6 6 6 N 5 -3.23 0.50 117.00 113.77 A A A C4 C5 C6 DA DA DA 6 6 6 N 5 3.04 0.50 117.70 120.74 A A A C5 C6 N1 DA DA DA 6 6 6 N 5 -3.92 0.60 118.60 114.68 A A A N1 C6 N6 DA DA DA 6 6 6 N 5 1.89 0.30 108.30 110.19 A A A O4' C1' N1 DT DT DT 7 7 7 N 5 -4.38 0.60 122.30 117.92 A A A N3 C2 O2 DT DT DT 7 7 7 N 5 2.01 0.30 108.30 110.31 A A A O4' C1' N1 DT DT DT 8 8 8 N 5 -4.34 0.60 122.30 117.96 A A A N3 C2 O2 DT DT DT 8 8 8 N 5 4.26 0.30 108.30 112.56 A A A O4' C1' N9 DG DG DG 10 10 10 N 5 -5.67 0.70 121.90 116.23 A A A N3 C2 O2 DC DC DC 11 11 11 N 5 3.48 0.30 108.30 111.78 A A A O4' C1' N9 DG DG DG 12 12 12 N 5 3.79 0.30 108.30 112.09 B B B O4' C1' N1 DC DC DC 13 13 13 N 5 3.64 0.60 118.90 122.54 B B B N1 C2 O2 DC DC DC 13 13 13 N 5 -5.49 0.70 121.90 116.41 B B B N3 C2 O2 DC DC DC 13 13 13 N 5 5.04 0.30 108.30 113.34 B B B O4' C1' N1 DC DC DC 15 15 15 N 5 5.13 0.60 118.90 124.03 B B B N1 C2 O2 DC DC DC 15 15 15 N 5 -5.49 0.70 121.90 116.41 B B B N3 C2 O2 DC DC DC 15 15 15 N 5 -3.69 0.60 119.90 116.21 B B B N1 C6 O6 DG DG DG 16 16 16 N 5 3.25 0.30 108.30 111.55 B B B O4' C1' N9 DA DA DA 17 17 17 N 5 -3.12 0.50 117.00 113.88 B B B C4 C5 C6 DA DA DA 17 17 17 N 5 3.77 0.50 117.70 121.47 B B B C5 C6 N1 DA DA DA 17 17 17 N 5 -4.78 0.60 118.60 113.82 B B B N1 C6 N6 DA DA DA 17 17 17 N 5 -3.56 0.50 117.00 113.44 B B B C4 C5 C6 DA DA DA 18 18 18 N 5 3.57 0.50 117.70 121.27 B B B C5 C6 N1 DA DA DA 18 18 18 N 5 -5.76 0.60 118.60 112.84 B B B N1 C6 N6 DA DA DA 18 18 18 N 5 2.73 0.30 108.30 111.03 B B B O4' C1' N1 DT DT DT 19 19 19 N 5 4.00 0.60 118.00 122.00 B B B C4 C5 C6 DT DT DT 19 19 19 N 5 -4.43 0.60 122.30 117.87 B B B N3 C2 O2 DT DT DT 19 19 19 N 5 -4.09 0.60 122.90 118.81 B B B C6 C5 C7 DT DT DT 19 19 19 N 5 -5.49 0.60 122.30 116.81 B B B N3 C2 O2 DT DT DT 20 20 20 N 5 -4.27 0.60 122.90 118.63 B B B C6 C5 C7 DT DT DT 20 20 20 N 5 2.62 0.30 108.30 110.92 B B B O4' C1' N9 DG DG DG 22 22 22 N 5 2.32 0.30 108.30 110.62 B B B O4' C1' N1 DC DC DC 23 23 23 N 5 -4.37 0.70 121.90 117.53 B B B N3 C2 O2 DC DC DC 23 23 23 N 5 4.03 0.30 108.30 112.33 B B B O4' C1' N9 DG DG DG 24 24 24 N 6 2.24 0.30 108.30 110.54 A A A O4' C1' N1 DC DC DC 1 1 1 N 6 -5.15 0.70 121.90 116.75 A A A N3 C2 O2 DC DC DC 1 1 1 N 6 7.62 1.20 119.70 127.32 A A A C3' O3' P DC DC DG 1 1 2 Y 6 1.83 0.30 108.30 110.13 A A A O4' C1' N9 DG DG DG 2 2 2 N 6 5.14 0.30 108.30 113.44 A A A O4' C1' N1 DC DC DC 3 3 3 N 6 -5.38 0.70 121.90 116.52 A A A N3 C2 O2 DC DC DC 3 3 3 N 6 3.23 0.50 117.70 120.93 A A A C5 C6 N1 DA DA DA 5 5 5 N 6 -4.24 0.60 118.60 114.36 A A A N1 C6 N6 DA DA DA 5 5 5 N 6 3.89 0.50 117.70 121.59 A A A C5 C6 N1 DA DA DA 6 6 6 N 6 -5.55 0.60 118.60 113.05 A A A N1 C6 N6 DA DA DA 6 6 6 N 6 3.23 0.30 108.30 111.53 A A A O4' C1' N1 DT DT DT 8 8 8 N 6 -4.08 0.60 122.90 118.82 A A A C6 C5 C7 DT DT DT 8 8 8 N 6 2.60 0.30 108.30 110.90 A A A O4' C1' N9 DG DG DG 10 10 10 N 6 4.41 0.60 106.00 110.41 A A A O4' C4' C3' DC DC DC 11 11 11 N 6 2.60 0.40 121.90 124.50 A A A N3 C4 C5 DC DC DC 11 11 11 N 6 3.94 0.60 118.90 122.84 A A A N1 C2 O2 DC DC DC 11 11 11 N 6 -5.08 0.70 121.90 116.82 A A A N3 C2 O2 DC DC DC 11 11 11 N 6 4.45 0.30 108.30 112.75 A A A O4' C1' N9 DG DG DG 12 12 12 N 6 3.03 0.30 108.30 111.33 B B B O4' C1' N1 DC DC DC 13 13 13 N 6 -5.41 0.70 121.90 116.49 B B B N3 C2 O2 DC DC DC 13 13 13 N 6 4.69 0.30 108.30 112.99 B B B O4' C1' N1 DC DC DC 15 15 15 N 6 3.75 0.60 118.90 122.65 B B B N1 C2 O2 DC DC DC 15 15 15 N 6 -5.36 0.70 121.90 116.54 B B B N3 C2 O2 DC DC DC 15 15 15 N 6 -3.78 0.60 119.90 116.12 B B B N1 C6 O6 DG DG DG 16 16 16 N 6 -3.06 0.50 117.00 113.94 B B B C4 C5 C6 DA DA DA 17 17 17 N 6 -4.65 0.60 118.60 113.95 B B B N1 C6 N6 DA DA DA 17 17 17 N 6 -3.85 0.60 118.60 114.75 B B B N1 C6 N6 DA DA DA 18 18 18 N 6 4.26 0.30 108.30 112.56 B B B O4' C1' N1 DT DT DT 19 19 19 N 6 -4.27 0.60 122.30 118.03 B B B N3 C2 O2 DT DT DT 19 19 19 N 6 2.31 0.30 108.30 110.61 B B B O4' C1' N1 DT DT DT 20 20 20 N 6 -4.33 0.60 122.30 117.97 B B B N3 C2 O2 DT DT DT 20 20 20 N 6 -4.36 0.60 122.90 118.54 B B B C6 C5 C7 DT DT DT 20 20 20 N 6 2.98 0.30 108.30 111.28 B B B O4' C1' N9 DG DG DG 22 22 22 N 6 -4.65 0.70 121.90 117.25 B B B N3 C2 O2 DC DC DC 23 23 23 N 6 6.32 0.30 108.30 114.62 B B B O4' C1' N9 DG DG DG 24 24 24 N 6 -4.29 0.60 119.90 115.61 B B B N1 C6 O6 DG DG DG 24 24 24 N 7 3.02 0.30 108.30 111.32 A A A O4' C1' N1 DC DC DC 1 1 1 N 7 7.27 1.20 119.70 126.97 A A A C3' O3' P DC DC DG 1 1 2 Y 7 -3.80 0.60 119.90 116.10 A A A N1 C6 O6 DG DG DG 2 2 2 N 7 -5.12 0.80 105.90 100.78 A A A O4' C1' C2' DC DC DC 3 3 3 N 7 5.37 0.30 108.30 113.67 A A A O4' C1' N1 DC DC DC 3 3 3 N 7 -4.36 0.70 121.90 117.54 A A A N3 C2 O2 DC DC DC 3 3 3 N 7 2.32 0.30 108.30 110.62 A A A O4' C1' N9 DG DG DG 4 4 4 N 7 2.73 0.30 108.30 111.03 A A A O4' C1' N9 DA DA DA 5 5 5 N 7 -3.36 0.50 117.00 113.64 A A A C4 C5 C6 DA DA DA 5 5 5 N 7 3.61 0.50 117.70 121.31 A A A C5 C6 N1 DA DA DA 5 5 5 N 7 -4.84 0.60 118.60 113.76 A A A N1 C6 N6 DA DA DA 5 5 5 N 7 3.64 0.50 117.70 121.34 A A A C5 C6 N1 DA DA DA 6 6 6 N 7 -5.35 0.60 118.60 113.25 A A A N1 C6 N6 DA DA DA 6 6 6 N 7 2.05 0.30 108.30 110.35 A A A O4' C1' N1 DT DT DT 7 7 7 N 7 -3.79 0.60 122.90 119.11 A A A C6 C5 C7 DT DT DT 7 7 7 N 7 2.09 0.30 108.30 110.39 A A A O4' C1' N1 DT DT DT 8 8 8 N 7 -4.19 0.60 122.90 118.71 A A A C6 C5 C7 DT DT DT 8 8 8 N 7 3.59 0.30 108.30 111.89 A A A O4' C1' N9 DG DG DG 10 10 10 N 7 -4.27 0.70 121.90 117.63 A A A N3 C2 O2 DC DC DC 11 11 11 N 7 3.35 0.30 108.30 111.65 A A A O4' C1' N9 DG DG DG 12 12 12 N 7 3.82 0.60 118.90 122.72 B B B N1 C2 O2 DC DC DC 13 13 13 N 7 -4.88 0.70 121.90 117.02 B B B N3 C2 O2 DC DC DC 13 13 13 N 7 4.74 0.30 108.30 113.04 B B B O4' C1' N1 DC DC DC 15 15 15 N 7 3.78 0.60 118.90 122.68 B B B N1 C2 O2 DC DC DC 15 15 15 N 7 -4.97 0.70 121.90 116.93 B B B N3 C2 O2 DC DC DC 15 15 15 N 7 2.76 0.30 108.30 111.06 B B B O4' C1' N9 DG DG DG 16 16 16 N 7 1.89 0.30 108.30 110.19 B B B O4' C1' N9 DA DA DA 17 17 17 N 7 -3.99 0.50 117.00 113.01 B B B C4 C5 C6 DA DA DA 17 17 17 N 7 4.08 0.50 117.70 121.78 B B B C5 C6 N1 DA DA DA 17 17 17 N 7 -4.92 0.60 118.60 113.68 B B B N1 C6 N6 DA DA DA 17 17 17 N 7 -3.76 0.50 117.00 113.24 B B B C4 C5 C6 DA DA DA 18 18 18 N 7 3.90 0.50 117.70 121.60 B B B C5 C6 N1 DA DA DA 18 18 18 N 7 -5.46 0.60 118.60 113.14 B B B N1 C6 N6 DA DA DA 18 18 18 N 7 2.49 0.30 108.30 110.79 B B B O4' C1' N1 DT DT DT 19 19 19 N 7 3.61 0.60 118.00 121.61 B B B C4 C5 C6 DT DT DT 19 19 19 N 7 -4.02 0.60 122.30 118.28 B B B N3 C2 O2 DT DT DT 19 19 19 N 7 -4.75 0.60 122.90 118.15 B B B C6 C5 C7 DT DT DT 19 19 19 N 7 -3.80 0.60 122.30 118.50 B B B N3 C2 O2 DT DT DT 20 20 20 N 7 2.86 0.40 121.90 124.76 B B B N3 C4 C5 DC DC DC 23 23 23 N 7 3.80 0.60 118.90 122.70 B B B N1 C2 O2 DC DC DC 23 23 23 N 7 -4.40 0.70 121.90 117.50 B B B N3 C2 O2 DC DC DC 23 23 23 N 7 3.94 0.30 108.30 112.24 B B B O4' C1' N9 DG DG DG 24 24 24 N 8 2.43 0.30 108.30 110.73 A A A O4' C1' N1 DC DC DC 1 1 1 N 8 7.31 1.20 119.70 127.01 A A A C3' O3' P DC DC DG 1 1 2 Y 8 -4.27 0.60 119.90 115.63 A A A N1 C6 O6 DG DG DG 2 2 2 N 8 5.63 0.30 108.30 113.93 A A A O4' C1' N1 DC DC DC 3 3 3 N 8 3.66 0.60 118.90 122.56 A A A N1 C2 O2 DC DC DC 3 3 3 N 8 -5.16 0.70 121.90 116.74 A A A N3 C2 O2 DC DC DC 3 3 3 N 8 -3.82 0.60 119.90 116.08 A A A N1 C6 O6 DG DG DG 4 4 4 N 8 -4.56 0.50 117.00 112.44 A A A C4 C5 C6 DA DA DA 5 5 5 N 8 4.51 0.50 117.70 122.21 A A A C5 C6 N1 DA DA DA 5 5 5 N 8 -4.93 0.60 118.60 113.67 A A A N1 C6 N6 DA DA DA 5 5 5 N 8 -3.34 0.50 117.00 113.66 A A A C4 C5 C6 DA DA DA 6 6 6 N 8 3.05 0.50 117.70 120.75 A A A C5 C6 N1 DA DA DA 6 6 6 N 8 -4.39 0.60 118.60 114.21 A A A N1 C6 N6 DA DA DA 6 6 6 N 8 3.09 0.30 108.30 111.39 A A A O4' C1' N1 DT DT DT 7 7 7 N 8 -4.30 0.60 122.30 118.00 A A A N3 C2 O2 DT DT DT 7 7 7 N 8 2.33 0.30 108.30 110.63 A A A O4' C1' N1 DT DT DT 8 8 8 N 8 -4.16 0.60 122.30 118.14 A A A N3 C2 O2 DT DT DT 8 8 8 N 8 -4.15 0.60 122.90 118.75 A A A C6 C5 C7 DT DT DT 8 8 8 N 8 2.74 0.30 108.30 111.04 A A A O4' C1' N9 DG DG DG 10 10 10 N 8 -4.67 0.70 119.90 115.23 A A A N3 C2 N2 DG DG DG 10 10 10 N 8 2.01 0.30 108.30 110.31 A A A O4' C1' N1 DC DC DC 11 11 11 N 8 4.04 0.60 118.90 122.94 A A A N1 C2 O2 DC DC DC 11 11 11 N 8 -5.79 0.70 121.90 116.11 A A A N3 C2 O2 DC DC DC 11 11 11 N 8 3.76 0.30 108.30 112.06 A A A O4' C1' N9 DG DG DG 12 12 12 N 8 3.52 0.30 108.30 111.82 B B B O4' C1' N1 DC DC DC 13 13 13 N 8 -4.32 0.70 121.90 117.58 B B B N3 C2 O2 DC DC DC 13 13 13 N 8 -3.83 0.60 119.90 116.07 B B B N1 C6 O6 DG DG DG 14 14 14 N 8 4.61 0.30 108.30 112.91 B B B O4' C1' N1 DC DC DC 15 15 15 N 8 -4.48 0.70 121.90 117.42 B B B N3 C2 O2 DC DC DC 15 15 15 N 8 2.59 0.30 108.30 110.89 B B B O4' C1' N9 DG DG DG 16 16 16 N 8 -3.15 0.50 117.00 113.85 B B B C4 C5 C6 DA DA DA 17 17 17 N 8 -4.61 0.60 118.60 113.99 B B B N1 C6 N6 DA DA DA 17 17 17 N 8 -4.79 0.60 118.60 113.81 B B B N1 C6 N6 DA DA DA 18 18 18 N 8 3.24 0.30 108.30 111.54 B B B O4' C1' N1 DT DT DT 19 19 19 N 8 2.47 0.30 108.30 110.77 B B B O4' C1' N1 DT DT DT 20 20 20 N 8 -4.06 0.60 122.30 118.24 B B B N3 C2 O2 DT DT DT 20 20 20 N 8 3.78 0.60 118.90 122.68 B B B N1 C2 O2 DC DC DC 23 23 23 N 8 -5.53 0.70 121.90 116.37 B B B N3 C2 O2 DC DC DC 23 23 23 N 8 2.94 0.30 108.30 111.24 B B B O4' C1' N9 DG DG DG 24 24 24 N 8 -3.68 0.60 119.90 116.22 B B B N1 C6 O6 DG DG DG 24 24 24 N 9 2.40 0.30 108.30 110.70 A A A O4' C1' N1 DC DC DC 1 1 1 N 9 -5.26 0.70 121.90 116.64 A A A N3 C2 O2 DC DC DC 1 1 1 N 9 4.50 0.30 108.30 112.80 A A A O4' C1' N1 DC DC DC 3 3 3 N 9 -5.77 0.70 121.90 116.13 A A A N3 C2 O2 DC DC DC 3 3 3 N 9 1.98 0.30 108.30 110.28 A A A O4' C1' N9 DA DA DA 5 5 5 N 9 -3.86 0.50 117.00 113.14 A A A C4 C5 C6 DA DA DA 5 5 5 N 9 4.05 0.50 117.70 121.75 A A A C5 C6 N1 DA DA DA 5 5 5 N 9 -5.76 0.60 118.60 112.84 A A A N1 C6 N6 DA DA DA 5 5 5 N 9 -3.37 0.50 117.00 113.63 A A A C4 C5 C6 DA DA DA 6 6 6 N 9 3.68 0.50 117.70 121.38 A A A C5 C6 N1 DA DA DA 6 6 6 N 9 -4.20 0.60 118.60 114.40 A A A N1 C6 N6 DA DA DA 6 6 6 N 9 4.16 0.30 108.30 112.46 A A A O4' C1' N1 DT DT DT 7 7 7 N 9 -5.22 0.60 122.30 117.08 A A A N3 C2 O2 DT DT DT 7 7 7 N 9 4.07 0.30 108.30 112.37 A A A O4' C1' N1 DT DT DT 8 8 8 N 9 -5.65 0.60 122.30 116.65 A A A N3 C2 O2 DT DT DT 8 8 8 N 9 -4.41 0.60 122.90 118.49 A A A C6 C5 C7 DT DT DT 8 8 8 N 9 2.11 0.30 108.30 110.41 A A A O4' C1' N1 DC DC DC 11 11 11 N 9 5.19 0.60 118.90 124.09 A A A N1 C2 O2 DC DC DC 11 11 11 N 9 -6.37 0.70 121.90 115.53 A A A N3 C2 O2 DC DC DC 11 11 11 N 9 3.30 0.30 108.30 111.60 A A A O4' C1' N9 DG DG DG 12 12 12 N 9 4.60 0.30 108.30 112.90 B B B O4' C1' N1 DC DC DC 13 13 13 N 9 2.87 0.40 121.90 124.77 B B B N3 C4 C5 DC DC DC 13 13 13 N 9 4.04 0.60 118.90 122.94 B B B N1 C2 O2 DC DC DC 13 13 13 N 9 -4.53 0.70 121.90 117.37 B B B N3 C2 O2 DC DC DC 13 13 13 N 9 3.76 0.60 106.00 109.76 B B B O4' C4' C3' DG DG DG 14 14 14 N 9 4.53 0.30 108.30 112.83 B B B O4' C1' N1 DC DC DC 15 15 15 N 9 -5.29 0.70 121.90 116.61 B B B N3 C2 O2 DC DC DC 15 15 15 N 9 -4.42 0.60 119.90 115.48 B B B N1 C6 O6 DG DG DG 16 16 16 N 9 -3.15 0.50 117.00 113.85 B B B C4 C5 C6 DA DA DA 17 17 17 N 9 -4.88 0.60 118.60 113.72 B B B N1 C6 N6 DA DA DA 17 17 17 N 9 3.38 0.50 117.70 121.08 B B B C5 C6 N1 DA DA DA 18 18 18 N 9 -4.21 0.60 118.60 114.39 B B B N1 C6 N6 DA DA DA 18 18 18 N 9 2.40 0.30 108.30 110.70 B B B O4' C1' N1 DT DT DT 19 19 19 N 9 3.44 0.30 108.30 111.74 B B B O4' C1' N1 DT DT DT 20 20 20 N 9 3.08 0.30 108.30 111.38 B B B O4' C1' N9 DG DG DG 22 22 22 N 9 4.19 0.60 118.90 123.09 B B B N1 C2 O2 DC DC DC 23 23 23 N 9 -5.68 0.70 121.90 116.22 B B B N3 C2 O2 DC DC DC 23 23 23 N 9 3.57 0.30 108.30 111.87 B B B O4' C1' N9 DG DG DG 24 24 24 N 10 -3.00 0.40 104.50 101.50 A A A O4' C4' C3' DC DC DC 1 1 1 N 10 -5.80 0.70 121.90 116.10 A A A N3 C2 O2 DC DC DC 1 1 1 N 10 5.51 0.30 108.30 113.81 A A A O4' C1' N1 DC DC DC 3 3 3 N 10 3.63 0.60 118.90 122.53 A A A N1 C2 O2 DC DC DC 3 3 3 N 10 -4.84 0.70 121.90 117.06 A A A N3 C2 O2 DC DC DC 3 3 3 N 10 2.19 0.30 108.30 110.49 A A A O4' C1' N9 DG DG DG 4 4 4 N 10 -3.62 0.60 119.90 116.28 A A A N1 C6 O6 DG DG DG 4 4 4 N 10 3.27 0.50 117.70 120.97 A A A C5 C6 N1 DA DA DA 5 5 5 N 10 -4.21 0.60 118.60 114.39 A A A N1 C6 N6 DA DA DA 5 5 5 N 10 -5.36 0.60 118.60 113.24 A A A N1 C6 N6 DA DA DA 6 6 6 N 10 2.58 0.30 108.30 110.88 A A A O4' C1' N1 DT DT DT 7 7 7 N 10 -3.86 0.60 122.90 119.04 A A A C6 C5 C7 DT DT DT 7 7 7 N 10 2.62 0.30 108.30 110.92 A A A O4' C1' N9 DG DG DG 10 10 10 N 10 -3.72 0.60 119.90 116.18 A A A N1 C6 O6 DG DG DG 10 10 10 N 10 3.02 0.30 108.30 111.32 A A A O4' C1' N1 DC DC DC 11 11 11 N 10 -4.83 0.70 121.90 117.07 A A A N3 C2 O2 DC DC DC 11 11 11 N 10 4.06 0.30 108.30 112.36 A A A O4' C1' N9 DG DG DG 12 12 12 N 10 -3.84 0.60 119.90 116.06 A A A N1 C6 O6 DG DG DG 12 12 12 N 10 2.64 0.30 108.30 110.94 B B B O4' C1' N1 DC DC DC 13 13 13 N 10 2.51 0.40 121.90 124.41 B B B N3 C4 C5 DC DC DC 13 13 13 N 10 4.83 0.30 108.30 113.13 B B B O4' C1' N1 DC DC DC 15 15 15 N 10 4.44 0.60 118.90 123.34 B B B N1 C2 O2 DC DC DC 15 15 15 N 10 -5.39 0.70 121.90 116.51 B B B N3 C2 O2 DC DC DC 15 15 15 N 10 2.61 0.30 108.30 110.91 B B B O4' C1' N9 DG DG DG 16 16 16 N 10 -3.82 0.60 119.90 116.08 B B B N1 C6 O6 DG DG DG 16 16 16 N 10 3.52 0.30 108.30 111.82 B B B O4' C1' N9 DA DA DA 17 17 17 N 10 -4.09 0.50 117.00 112.91 B B B C4 C5 C6 DA DA DA 17 17 17 N 10 3.18 0.50 117.70 120.88 B B B C5 C6 N1 DA DA DA 17 17 17 N 10 -3.96 0.60 118.60 114.64 B B B N1 C6 N6 DA DA DA 17 17 17 N 10 -3.79 0.50 117.00 113.21 B B B C4 C5 C6 DA DA DA 18 18 18 N 10 3.91 0.50 117.70 121.61 B B B C5 C6 N1 DA DA DA 18 18 18 N 10 -4.60 0.60 118.60 114.00 B B B N1 C6 N6 DA DA DA 18 18 18 N 10 3.83 0.30 108.30 112.13 B B B O4' C1' N1 DT DT DT 20 20 20 N 10 -4.07 0.60 122.30 118.23 B B B N3 C2 O2 DT DT DT 20 20 20 N 10 -3.80 0.60 122.90 119.10 B B B C6 C5 C7 DT DT DT 20 20 20 N 10 2.79 0.30 108.30 111.09 B B B O4' C1' N9 DG DG DG 22 22 22 N 10 -3.72 0.60 119.90 116.18 B B B N1 C6 O6 DG DG DG 22 22 22 N 10 3.56 0.30 108.30 111.86 B B B O4' C1' N9 DG DG DG 24 24 24 N 1 A A O5' C5' DC DC 1 1 -0.417 0.025 1.418 1.001 N 1 A A C5' C4' DC DC 1 1 -0.135 0.011 1.509 1.374 N 1 A A C4' C3' DC DC 1 1 -0.167 0.010 1.521 1.354 N 1 A A C2' C1' DC DC 1 1 -0.063 0.010 1.518 1.455 N 1 A A O4' C1' DC DC 1 1 -0.095 0.012 1.418 1.323 N 1 A A O3' C3' DC DC 1 1 -0.092 0.006 1.419 1.327 N 1 A A N1 C6 DC DC 1 1 -0.039 0.006 1.367 1.328 N 1 A A N3 C4 DC DC 1 1 -0.048 0.007 1.335 1.287 N 1 A A O3' P DC DG 1 2 -0.127 0.012 1.607 1.480 Y 1 A A P OP1 DG DG 2 2 -0.157 0.017 1.485 1.328 N 1 A A P OP2 DG DG 2 2 -0.139 0.017 1.485 1.346 N 1 A A O5' C5' DG DG 2 2 -0.528 0.025 1.418 0.890 N 1 B B O5' C5' DC DC 13 13 -0.556 0.025 1.418 0.862 N 2 B B C5' C4' DC DC 13 13 0.046 0.007 1.512 1.558 N 3 B B C5 N7 DG DG 22 22 0.036 0.006 1.388 1.424 N 4 B B C5 C7 DT DT 19 19 0.042 0.006 1.496 1.538 N 5 B B C5' C4' DG DG 16 16 0.047 0.007 1.512 1.559 N 7 A A C5' C4' DG DG 12 12 0.042 0.007 1.512 1.554 N 7 B B C5 C7 DT DT 19 19 0.040 0.006 1.496 1.536 N 8 A A C5 N7 DG DG 4 4 0.036 0.006 1.388 1.424 N mean structure, model1 minimized average Structure of perimidinone-derived synthetic nucleoside paired with guanine in DNA duplex 1 N N 1 N N covale 1.615 both A DT 8 A O3' DT 8 1_555 A D3N 9 A P D3N 9 1_555 covale 1.603 one A D3N 9 A O3' D3N 9 1_555 A DG 10 A P DG 10 1_555 covale 1.617 both B DT 20 B O3' DT 8 1_555 B D3N 21 B P D3N 9 1_555 covale 1.602 one B D3N 21 B O3' D3N 9 1_555 B DG 22 B P DG 10 1_555 hydrog WATSON-CRICK A DC 1 A N3 DC 1 1_555 B DG 24 B N1 DG 12 1_555 hydrog WATSON-CRICK A DC 1 A N4 DC 1 1_555 B DG 24 B O6 DG 12 1_555 hydrog WATSON-CRICK A DC 1 A O2 DC 1 1_555 B DG 24 B N2 DG 12 1_555 hydrog WATSON-CRICK A DG 2 A N1 DG 2 1_555 B DC 23 B N3 DC 11 1_555 hydrog WATSON-CRICK A DG 2 A N2 DG 2 1_555 B DC 23 B O2 DC 11 1_555 hydrog WATSON-CRICK A DG 2 A O6 DG 2 1_555 B DC 23 B N4 DC 11 1_555 hydrog WATSON-CRICK A DC 3 A N3 DC 3 1_555 B DG 22 B N1 DG 10 1_555 hydrog WATSON-CRICK A DC 3 A N4 DC 3 1_555 B DG 22 B O6 DG 10 1_555 hydrog WATSON-CRICK A DC 3 A O2 DC 3 1_555 B DG 22 B N2 DG 10 1_555 hydrog WATSON-CRICK A DA 5 A N1 DA 5 1_555 B DT 20 B N3 DT 8 1_555 hydrog WATSON-CRICK A DA 5 A N6 DA 5 1_555 B DT 20 B O4 DT 8 1_555 hydrog WATSON-CRICK A DA 6 A N1 DA 6 1_555 B DT 19 B N3 DT 7 1_555 hydrog WATSON-CRICK A DA 6 A N6 DA 6 1_555 B DT 19 B O4 DT 7 1_555 hydrog WATSON-CRICK A DT 7 A N3 DT 7 1_555 B DA 18 B N1 DA 6 1_555 hydrog WATSON-CRICK A DT 7 A O4 DT 7 1_555 B DA 18 B N6 DA 6 1_555 hydrog WATSON-CRICK A DT 8 A N3 DT 8 1_555 B DA 17 B N1 DA 5 1_555 hydrog WATSON-CRICK A DT 8 A O4 DT 8 1_555 B DA 17 B N6 DA 5 1_555 hydrog WATSON-CRICK A DG 10 A N1 DG 10 1_555 B DC 15 B N3 DC 3 1_555 hydrog WATSON-CRICK A DG 10 A N2 DG 10 1_555 B DC 15 B O2 DC 3 1_555 hydrog WATSON-CRICK A DG 10 A O6 DG 10 1_555 B DC 15 B N4 DC 3 1_555 hydrog WATSON-CRICK A DC 11 A N3 DC 11 1_555 B DG 14 B N1 DG 2 1_555 hydrog WATSON-CRICK A DC 11 A N4 DC 11 1_555 B DG 14 B O6 DG 2 1_555 hydrog WATSON-CRICK A DC 11 A O2 DC 11 1_555 B DG 14 B N2 DG 2 1_555 hydrog WATSON-CRICK A DG 12 A N1 DG 12 1_555 B DC 13 B N3 DC 1 1_555 hydrog WATSON-CRICK A DG 12 A N2 DG 12 1_555 B DC 13 B O2 DC 1 1_555 hydrog WATSON-CRICK A DG 12 A O6 DG 12 1_555 B DC 13 B N4 DC 1 1_555 DNA B-form DNA, dPer, Perimidinone-Derived Nucleoside, Dickerson-Drew Dodecamer, DNA 2M11 PDB 1 2M11 1 12 2M11 1 12 2M11 A 1 1 12 13 24 2M11 13 24 2M11 B 1 1 12 1 P 1