1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Popovic, M. Greenbaum, N.L. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking To be Published 0353 ID3 stem 10.2210/pdb2m1o/pdb pdb_00002m1o 2277.403 RNA (5'-R(P*GP*GP*GP*UP*GP*UP*A)-3') 1 syn polymer 2179.387 RNA (5'-R(P*AP*GP*CP*AP*CP*CP*C)-3') 1 syn polymer no no GGGUGUA GGGUGUA A polyribonucleotide no no AGCACCC AGCACCC B polyribonucleotide n n n n n n n n n n n n n n RNA duplex -25.764 1 19 A 1 B 23 -9.563 A_G1:C23_B 1 14.157 0.187 -1.429 -0.342 -7.986 1 19 A 2 B 22 1.090 A_G2:C22_B 2 9.543 -0.151 0.366 -0.228 1.281 1 19 A 3 B 21 -2.025 A_G3:C21_B 3 5.137 -0.076 0.135 -0.169 -1.874 1 20 A 4 B 20 -5.307 A_U4:A20_B 4 -1.845 0.085 0.321 -0.092 1.874 1 19 A 5 B 19 -2.411 A_G5:C19_B 5 -1.473 -0.056 0.502 -0.214 12.751 1 28 A 6 B 18 -3.191 A_U6:G18_B 6 13.405 2.511 -0.344 -0.447 2.241 31.451 A A 1 2 22.516 B B 23 22 3.304 11.746 1.271 -0.917 AA_G1G2:C22C23_BB 1 -8.980 17.213 27.837 -3.676 -3.862 2.459 28.456 A A 2 3 20.854 B B 22 21 3.275 10.029 -0.085 -1.724 AA_G2G3:C21C22_BB 2 2.200 -4.575 26.575 -5.593 0.631 3.068 30.754 A A 3 4 20.101 B B 21 20 3.886 10.458 -0.220 -1.788 AA_G3U4:A20C21_BB 3 0.171 -0.329 28.961 -5.616 0.452 2.539 29.657 A A 4 5 21.638 B B 20 19 3.364 10.828 0.185 -1.662 AA_U4G5:C19A20_BB 4 -0.882 1.762 27.636 -5.384 -0.536 2.918 42.376 A A 5 6 21.527 B B 19 18 3.455 15.205 -0.285 -0.775 AA_G5U6:G18C19_BB 5 5.183 -7.338 39.343 -2.646 0.931 database_2 pdbx_database_status pdbx_nmr_software pdbx_nmr_spectrometer repository Initial release Data collection Database references Other 1 0 2013-02-13 1 1 2023-06-14 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.status_code_nmr_data _pdbx_nmr_software.name _pdbx_nmr_spectrometer.model BMRB Y RCSB 2012-12-03 REL REL REL REL structures with the lowest energy 100 10 2D 1H-13C HSQC aliphatic 2D 1H-13C HSQC aromatic 2D 1H-1H NOESY 2D 1H-1H TOCSY 1 mM 80 mM 0.1 mM 0.08 6.4 ambient 288 K torsion angle dynamics 1 lowest energy 1 mM RNA, 80 mM sodium chloride, 0.1 mM EDTA, 100% D2O 100% D2O Bruker Biospin collection TopSpin Schwieters, Kuszewski, Tjandra and Clore structure solution X-PLOR NIH CCPN chemical shift assignment CCPN Goddard chemical shift assignment Sparky Schwieters, Kuszewski, Tjandra and Clore refinement X-PLOR NIH 600 Bruker AVANCE Bruker Avance GUA 1 n 1 G 1 A GUA 2 n 2 G 2 A GUA 3 n 3 G 3 A URA 4 n 4 U 4 A GUA 5 n 5 G 5 A URA 6 n 6 U 6 A ADE 7 n 7 A 7 A ADE 17 n 1 A 17 B GUA 18 n 2 G 18 B CYT 19 n 3 C 19 B ADE 20 n 4 A 20 B CYT 21 n 5 C 21 B CYT 22 n 6 C 22 B CYT 23 n 7 C 23 B author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 5 B B C4' C3' G G 18 18 0.066 0.011 1.527 1.593 N lowest energy, model1 ID3 stem 1 N N 2 N N hydrog WATSON-CRICK A G 1 A N1 G 1 1_555 B C 23 B N3 C 7 1_555 hydrog WATSON-CRICK A G 1 A N2 G 1 1_555 B C 23 B O2 C 7 1_555 hydrog WATSON-CRICK A G 1 A O6 G 1 1_555 B C 23 B N4 C 7 1_555 hydrog WATSON-CRICK A G 2 A N1 G 2 1_555 B C 22 B N3 C 6 1_555 hydrog WATSON-CRICK A G 2 A N2 G 2 1_555 B C 22 B O2 C 6 1_555 hydrog WATSON-CRICK A G 2 A O6 G 2 1_555 B C 22 B N4 C 6 1_555 hydrog WATSON-CRICK A G 3 A N1 G 3 1_555 B C 21 B N3 C 5 1_555 hydrog WATSON-CRICK A G 3 A N2 G 3 1_555 B C 21 B O2 C 5 1_555 hydrog WATSON-CRICK A G 3 A O6 G 3 1_555 B C 21 B N4 C 5 1_555 hydrog WATSON-CRICK A U 4 A N3 U 4 1_555 B A 20 B N1 A 4 1_555 hydrog WATSON-CRICK A U 4 A O4 U 4 1_555 B A 20 B N6 A 4 1_555 hydrog WATSON-CRICK A G 5 A N1 G 5 1_555 B C 19 B N3 C 3 1_555 hydrog WATSON-CRICK A G 5 A N2 G 5 1_555 B C 19 B O2 C 3 1_555 hydrog WATSON-CRICK A G 5 A O6 G 5 1_555 B C 19 B N4 C 3 1_555 hydrog TYPE_28_PAIR A U 6 A N3 U 6 1_555 B G 18 B O6 G 2 1_555 hydrog TYPE_28_PAIR A U 6 A O2 U 6 1_555 B G 18 B N1 G 2 1_555 RNA ID3, group II intron, stem, ai5 gamma, RNA 2M1O PDB 1 2M1O 2M1O PDB 2 2M1O 1 7 2M1O 1 7 2M1O A 1 1 7 17 23 2M1O 17 23 2M1O B 2 1 7