1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Popovic, M.
Greenbaum, N.L.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
To be Published
0353
ID3 stem
10.2210/pdb2m1o/pdb
pdb_00002m1o
2277.403
RNA (5'-R(P*GP*GP*GP*UP*GP*UP*A)-3')
1
syn
polymer
2179.387
RNA (5'-R(P*AP*GP*CP*AP*CP*CP*C)-3')
1
syn
polymer
no
no
GGGUGUA
GGGUGUA
A
polyribonucleotide
no
no
AGCACCC
AGCACCC
B
polyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
RNA duplex
-25.764
1
19
A
1
B
23
-9.563
A_G1:C23_B
1
14.157
0.187
-1.429
-0.342
-7.986
1
19
A
2
B
22
1.090
A_G2:C22_B
2
9.543
-0.151
0.366
-0.228
1.281
1
19
A
3
B
21
-2.025
A_G3:C21_B
3
5.137
-0.076
0.135
-0.169
-1.874
1
20
A
4
B
20
-5.307
A_U4:A20_B
4
-1.845
0.085
0.321
-0.092
1.874
1
19
A
5
B
19
-2.411
A_G5:C19_B
5
-1.473
-0.056
0.502
-0.214
12.751
1
28
A
6
B
18
-3.191
A_U6:G18_B
6
13.405
2.511
-0.344
-0.447
2.241
31.451
A
A
1
2
22.516
B
B
23
22
3.304
11.746
1.271
-0.917
AA_G1G2:C22C23_BB
1
-8.980
17.213
27.837
-3.676
-3.862
2.459
28.456
A
A
2
3
20.854
B
B
22
21
3.275
10.029
-0.085
-1.724
AA_G2G3:C21C22_BB
2
2.200
-4.575
26.575
-5.593
0.631
3.068
30.754
A
A
3
4
20.101
B
B
21
20
3.886
10.458
-0.220
-1.788
AA_G3U4:A20C21_BB
3
0.171
-0.329
28.961
-5.616
0.452
2.539
29.657
A
A
4
5
21.638
B
B
20
19
3.364
10.828
0.185
-1.662
AA_U4G5:C19A20_BB
4
-0.882
1.762
27.636
-5.384
-0.536
2.918
42.376
A
A
5
6
21.527
B
B
19
18
3.455
15.205
-0.285
-0.775
AA_G5U6:G18C19_BB
5
5.183
-7.338
39.343
-2.646
0.931
database_2
pdbx_database_status
pdbx_nmr_software
pdbx_nmr_spectrometer
repository
Initial release
Data collection
Database references
Other
1
0
2013-02-13
1
1
2023-06-14
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_nmr_data
_pdbx_nmr_software.name
_pdbx_nmr_spectrometer.model
BMRB
Y
RCSB
2012-12-03
REL
REL
REL
REL
structures with the lowest energy
100
10
2D 1H-13C HSQC aliphatic
2D 1H-13C HSQC aromatic
2D 1H-1H NOESY
2D 1H-1H TOCSY
1
mM
80
mM
0.1
mM
0.08
6.4
ambient
288
K
torsion angle dynamics
1
lowest energy
1 mM RNA, 80 mM sodium chloride, 0.1 mM EDTA, 100% D2O
100% D2O
Bruker Biospin
collection
TopSpin
Schwieters, Kuszewski, Tjandra and Clore
structure solution
X-PLOR NIH
CCPN
chemical shift assignment
CCPN
Goddard
chemical shift assignment
Sparky
Schwieters, Kuszewski, Tjandra and Clore
refinement
X-PLOR NIH
600
Bruker
AVANCE
Bruker Avance
GUA
1
n
1
G
1
A
GUA
2
n
2
G
2
A
GUA
3
n
3
G
3
A
URA
4
n
4
U
4
A
GUA
5
n
5
G
5
A
URA
6
n
6
U
6
A
ADE
7
n
7
A
7
A
ADE
17
n
1
A
17
B
GUA
18
n
2
G
18
B
CYT
19
n
3
C
19
B
ADE
20
n
4
A
20
B
CYT
21
n
5
C
21
B
CYT
22
n
6
C
22
B
CYT
23
n
7
C
23
B
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
5
B
B
C4'
C3'
G
G
18
18
0.066
0.011
1.527
1.593
N
lowest energy, model1
ID3 stem
1
N
N
2
N
N
hydrog
WATSON-CRICK
A
G
1
A
N1
G
1
1_555
B
C
23
B
N3
C
7
1_555
hydrog
WATSON-CRICK
A
G
1
A
N2
G
1
1_555
B
C
23
B
O2
C
7
1_555
hydrog
WATSON-CRICK
A
G
1
A
O6
G
1
1_555
B
C
23
B
N4
C
7
1_555
hydrog
WATSON-CRICK
A
G
2
A
N1
G
2
1_555
B
C
22
B
N3
C
6
1_555
hydrog
WATSON-CRICK
A
G
2
A
N2
G
2
1_555
B
C
22
B
O2
C
6
1_555
hydrog
WATSON-CRICK
A
G
2
A
O6
G
2
1_555
B
C
22
B
N4
C
6
1_555
hydrog
WATSON-CRICK
A
G
3
A
N1
G
3
1_555
B
C
21
B
N3
C
5
1_555
hydrog
WATSON-CRICK
A
G
3
A
N2
G
3
1_555
B
C
21
B
O2
C
5
1_555
hydrog
WATSON-CRICK
A
G
3
A
O6
G
3
1_555
B
C
21
B
N4
C
5
1_555
hydrog
WATSON-CRICK
A
U
4
A
N3
U
4
1_555
B
A
20
B
N1
A
4
1_555
hydrog
WATSON-CRICK
A
U
4
A
O4
U
4
1_555
B
A
20
B
N6
A
4
1_555
hydrog
WATSON-CRICK
A
G
5
A
N1
G
5
1_555
B
C
19
B
N3
C
3
1_555
hydrog
WATSON-CRICK
A
G
5
A
N2
G
5
1_555
B
C
19
B
O2
C
3
1_555
hydrog
WATSON-CRICK
A
G
5
A
O6
G
5
1_555
B
C
19
B
N4
C
3
1_555
hydrog
TYPE_28_PAIR
A
U
6
A
N3
U
6
1_555
B
G
18
B
O6
G
2
1_555
hydrog
TYPE_28_PAIR
A
U
6
A
O2
U
6
1_555
B
G
18
B
N1
G
2
1_555
RNA
ID3, group II intron, stem, ai5 gamma, RNA
2M1O
PDB
1
2M1O
2M1O
PDB
2
2M1O
1
7
2M1O
1
7
2M1O
A
1
1
7
17
23
2M1O
17
23
2M1O
B
2
1
7