1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Prochnicka-Chalufour, A. Lefevre, J. Simenel, C. Delepelaire, P. Wandersman, C. Delepierre, M. Izadi-Pruneyre, N. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Plos One 1932-6203 8 e58964 e58964 10.1371/journal.pone.0058964 23527057 The Structure of HasB Reveals a New Class of TonB Protein Fold. 2013 10.2210/pdb2m2k/pdb pdb_00002m2k 14294.267 HasB protein HasB C-terminal domain (UNP residues 133-263) 1 man polymer no no KVQEQSVGAPPPGRADKTAAPQTRLTPYAQAGEDNWRSRISGRLNRFKRYPKDALRLKRQGVGQVRFTLDRQGHVLAVTL VSSAGLPSLDREIQALVKRASPLPTPPADAYVNGTVELTLPIDFSLRGAGF KVQEQSVGAPPPGRADKTAAPQTRLTPYAQAGEDNWRSRISGRLNRFKRYPKDALRLKRQGVGQVRFTLDRQGHVLAVTL VSSAGLPSLDREIQALVKRASPLPTPPADAYVNGTVELTLPIDFSLRGAGF A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample hasB 615 Serratia marcescens 562 Escherichia coli pBAD24 database_2 pdbx_database_status pdbx_nmr_software repository Initial release Data collection Database references Other 1 0 2013-04-10 1 1 2023-06-14 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.status_code_nmr_data _pdbx_nmr_software.name BMRB Y RCSB 2012-12-26 REL REL REL REL 2117 607 719 303 488 0 0 74 74 structures with the lowest energy 500 20 2D 1H-15N HSQC 2D 1H-13C HSQC 3D CBCA(CO)NH 3D C(CO)NH 3D HNCO 3D HNCACB 3D HBHA(CO)NH 3D 1H-15N NOESY 3D 1H-13C NOESY 0.8 mM [U-99% 13C; U-99% 15N] 0.5 7.0 ambient 293 K simulated annealing, molecular dynamics 1 lowest energy 0.8 mM [U-99% 13C; U-99% 15N] urea, 85% H2O/15% D2O 85% H2O/15% D2O Agilent Technologies data acquisition VnmrJ 3.2 Agilent Technologies data processing VnmrJ 3.2 Brunger, Adams, Clore, Gros, Nilges and Read structure solution CNS_1.2 Linge, O'Donoghue and Nilges structure solution Aria_2.2 Bartels et al. data analysis XEASY refinement Aria_2.2 Brunger, Adams, Clore, Gros, Nilges and Read refinement CNS_1.2 600 Varian INOVA Varian INOVA LYS 2 n 1 LYS 2 A VAL 3 n 2 VAL 3 A GLN 4 n 3 GLN 4 A GLU 5 n 4 GLU 5 A GLN 6 n 5 GLN 6 A SER 7 n 6 SER 7 A VAL 8 n 7 VAL 8 A GLY 9 n 8 GLY 9 A ALA 10 n 9 ALA 10 A PRO 11 n 10 PRO 11 A PRO 12 n 11 PRO 12 A PRO 13 n 12 PRO 13 A GLY 14 n 13 GLY 14 A ARG 15 n 14 ARG 15 A ALA 16 n 15 ALA 16 A ASP 17 n 16 ASP 17 A LYS 18 n 17 LYS 18 A THR 19 n 18 THR 19 A ALA 20 n 19 ALA 20 A ALA 21 n 20 ALA 21 A PRO 22 n 21 PRO 22 A GLN 23 n 22 GLN 23 A THR 24 n 23 THR 24 A ARG 25 n 24 ARG 25 A LEU 26 n 25 LEU 26 A THR 27 n 26 THR 27 A PRO 28 n 27 PRO 28 A TYR 29 n 28 TYR 29 A ALA 30 n 29 ALA 30 A GLN 31 n 30 GLN 31 A ALA 32 n 31 ALA 32 A GLY 33 n 32 GLY 33 A GLU 34 n 33 GLU 34 A ASP 35 n 34 ASP 35 A ASN 36 n 35 ASN 36 A TRP 37 n 36 TRP 37 A ARG 38 n 37 ARG 38 A SER 39 n 38 SER 39 A ARG 40 n 39 ARG 40 A ILE 41 n 40 ILE 41 A SER 42 n 41 SER 42 A GLY 43 n 42 GLY 43 A ARG 44 n 43 ARG 44 A LEU 45 n 44 LEU 45 A ASN 46 n 45 ASN 46 A ARG 47 n 46 ARG 47 A PHE 48 n 47 PHE 48 A LYS 49 n 48 LYS 49 A ARG 50 n 49 ARG 50 A TYR 51 n 50 TYR 51 A PRO 52 n 51 PRO 52 A LYS 53 n 52 LYS 53 A ASP 54 n 53 ASP 54 A ALA 55 n 54 ALA 55 A LEU 56 n 55 LEU 56 A ARG 57 n 56 ARG 57 A LEU 58 n 57 LEU 58 A LYS 59 n 58 LYS 59 A ARG 60 n 59 ARG 60 A GLN 61 n 60 GLN 61 A GLY 62 n 61 GLY 62 A VAL 63 n 62 VAL 63 A GLY 64 n 63 GLY 64 A GLN 65 n 64 GLN 65 A VAL 66 n 65 VAL 66 A ARG 67 n 66 ARG 67 A PHE 68 n 67 PHE 68 A THR 69 n 68 THR 69 A LEU 70 n 69 LEU 70 A ASP 71 n 70 ASP 71 A ARG 72 n 71 ARG 72 A GLN 73 n 72 GLN 73 A GLY 74 n 73 GLY 74 A HIS 75 n 74 HIS 75 A VAL 76 n 75 VAL 76 A LEU 77 n 76 LEU 77 A ALA 78 n 77 ALA 78 A VAL 79 n 78 VAL 79 A THR 80 n 79 THR 80 A LEU 81 n 80 LEU 81 A VAL 82 n 81 VAL 82 A SER 83 n 82 SER 83 A SER 84 n 83 SER 84 A ALA 85 n 84 ALA 85 A GLY 86 n 85 GLY 86 A LEU 87 n 86 LEU 87 A PRO 88 n 87 PRO 88 A SER 89 n 88 SER 89 A LEU 90 n 89 LEU 90 A ASP 91 n 90 ASP 91 A ARG 92 n 91 ARG 92 A GLU 93 n 92 GLU 93 A ILE 94 n 93 ILE 94 A GLN 95 n 94 GLN 95 A ALA 96 n 95 ALA 96 A LEU 97 n 96 LEU 97 A VAL 98 n 97 VAL 98 A LYS 99 n 98 LYS 99 A ARG 100 n 99 ARG 100 A ALA 101 n 100 ALA 101 A SER 102 n 101 SER 102 A PRO 103 n 102 PRO 103 A LEU 104 n 103 LEU 104 A PRO 105 n 104 PRO 105 A THR 106 n 105 THR 106 A PRO 107 n 106 PRO 107 A PRO 108 n 107 PRO 108 A ALA 109 n 108 ALA 109 A ASP 110 n 109 ASP 110 A ALA 111 n 110 ALA 111 A TYR 112 n 111 TYR 112 A VAL 113 n 112 VAL 113 A ASN 114 n 113 ASN 114 A GLY 115 n 114 GLY 115 A THR 116 n 115 THR 116 A VAL 117 n 116 VAL 117 A GLU 118 n 117 GLU 118 A LEU 119 n 118 LEU 119 A THR 120 n 119 THR 120 A LEU 121 n 120 LEU 121 A PRO 122 n 121 PRO 122 A ILE 123 n 122 ILE 123 A ASP 124 n 123 ASP 124 A PHE 125 n 124 PHE 125 A SER 126 n 125 SER 126 A LEU 127 n 126 LEU 127 A ARG 128 n 127 ARG 128 A GLY 129 n 128 GLY 129 A ALA 130 n 129 ALA 130 A GLY 131 n 130 GLY 131 A PHE 132 n 131 PHE 132 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O THR 80 A O THR 79 A N ARG 67 A N ARG 66 A N VAL 66 A N VAL 65 A O LEU 121 A O LEU 120 1 A A H HD12 VAL LEU 63 127 1.34 3 A A H HD12 VAL LEU 63 127 1.30 4 A A HB1 HD3 ALA PRO 21 22 1.34 5 A A HG3 HB2 ARG PRO 44 103 1.26 7 A A HA2 HG GLY LEU 62 127 1.24 8 A A HA HB2 ASN ARG 46 50 1.16 9 A A HA HD13 LEU LEU 87 90 1.20 9 A A O HG1 LYS THR 18 19 1.56 9 A A H3 OE2 LYS GLU 2 5 1.56 9 A A HH22 OD1 ARG ASP 38 124 1.60 10 A A HH12 OD1 ARG ASP 38 124 1.58 11 A A O H TRP ILE 37 41 1.60 12 A A HG3 HG2 ARG GLU 60 93 1.25 14 A A HA2 HG GLY LEU 62 127 1.26 15 A A HA2 HG GLY LEU 62 127 1.28 18 A A HA2 HG GLY LEU 62 127 1.32 19 A A HA HB2 ASN ARG 46 50 1.20 19 A A HA2 HG GLY LEU 62 127 1.33 19 A A O H GLN LYS 95 99 1.51 1 A GLN 6 -84.87 41.72 1 A SER 7 -81.50 35.14 1 A ALA 20 -97.72 59.80 1 A PRO 22 -90.28 -88.57 1 A THR 24 -77.98 40.35 1 A ASN 36 -68.93 94.31 1 A LYS 49 74.13 102.41 1 A LYS 59 -145.60 -75.27 1 A PRO 88 -77.94 -84.41 1 A ALA 101 -105.65 63.15 1 A ASN 114 159.74 -19.54 1 A SER 126 -56.98 103.42 2 A ARG 15 -91.33 49.88 2 A ALA 20 -90.10 47.99 2 A GLN 23 67.06 104.04 2 A PHE 48 -125.74 -57.64 2 A LYS 59 -142.25 -76.52 2 A PRO 88 -77.08 -83.05 2 A ASN 114 159.34 -23.07 2 A SER 126 -57.99 101.15 2 A ALA 130 -81.99 45.91 3 A GLU 5 -87.11 41.91 3 A ALA 10 67.83 74.01 3 A ARG 15 -121.67 -80.35 3 A ALA 16 61.83 96.20 3 A LYS 18 53.11 80.67 3 A THR 24 -88.79 38.58 3 A ALA 30 63.32 74.04 3 A ASP 35 -159.61 -72.99 3 A ASN 36 -178.44 38.10 3 A LYS 49 -173.56 116.98 3 A LYS 59 -145.80 -74.64 3 A SER 83 68.67 -178.03 3 A SER 84 -153.59 -56.57 3 A ALA 85 -106.59 -77.40 3 A PRO 88 -80.76 -81.93 3 A ASN 114 161.93 -27.29 4 A ARG 15 -147.80 -66.32 4 A ASP 17 -161.59 -157.72 4 A ALA 21 -126.33 -62.78 4 A ALA 32 59.69 -157.43 4 A ASP 35 -174.73 -41.51 4 A ASN 36 -154.79 30.66 4 A LYS 49 -164.62 103.38 4 A LYS 59 -131.64 -72.46 4 A PRO 88 -78.87 -79.47 4 A PRO 107 -57.73 108.78 4 A ASN 114 159.82 -29.98 4 A SER 126 -57.66 103.73 4 A ARG 128 -149.81 29.05 4 A ALA 130 -98.43 36.14 5 A GLN 6 -95.68 50.83 5 A ALA 16 -87.17 49.73 5 A LYS 18 71.81 -52.97 5 A THR 19 61.49 70.90 5 A THR 24 -85.88 30.10 5 A ASP 35 72.44 -5.86 5 A LYS 49 -178.28 114.47 5 A LYS 59 -128.44 -70.32 5 A PRO 88 -77.16 -78.74 5 A ALA 101 -114.71 75.16 5 A ASN 114 157.43 -13.78 5 A SER 126 -57.55 105.12 6 A SER 7 67.64 -80.54 6 A THR 19 -126.00 -72.85 6 A ALA 20 -86.95 43.16 6 A PRO 22 -75.73 40.54 6 A LEU 26 -166.36 70.77 6 A ASP 35 -118.94 -73.97 6 A ASN 36 -114.77 77.56 6 A LYS 49 172.96 103.43 6 A LYS 59 -151.21 -74.48 6 A SER 83 65.96 173.10 6 A SER 84 -146.70 -67.11 6 A ALA 85 -96.25 -86.08 6 A PRO 88 -75.36 -76.92 6 A PRO 105 -68.25 -77.90 6 A ASN 114 157.17 -16.17 6 A ALA 130 69.47 -55.79 7 A VAL 3 -90.16 -72.50 7 A GLN 4 159.02 57.69 7 A GLU 5 -165.35 115.20 7 A LYS 18 -105.58 -78.36 7 A PRO 22 -83.35 -82.52 7 A PRO 28 -58.15 107.21 7 A PHE 48 -99.79 -62.07 7 A LYS 49 -164.00 103.14 7 A LYS 59 -113.56 -81.90 7 A PRO 88 -73.91 -74.13 7 A ALA 101 -101.15 67.65 7 A ASN 114 159.75 -22.34 7 A SER 126 -58.74 102.50 8 A GLN 6 -91.52 -60.41 8 A ASP 17 46.54 73.18 8 A PRO 22 -74.99 -87.43 8 A THR 24 -78.22 44.53 8 A TYR 29 -90.32 45.30 8 A ASP 35 66.72 139.14 8 A ASN 36 178.46 -27.82 8 A LYS 49 -162.59 103.08 8 A LYS 59 -137.92 -74.42 8 A SER 83 75.29 171.39 8 A SER 84 -153.67 -52.44 8 A ALA 85 -120.93 -79.10 8 A PRO 88 -84.44 -81.57 8 A ALA 101 -93.34 58.83 8 A ASN 114 154.95 -15.35 8 A SER 126 -57.76 102.49 8 A ALA 130 74.37 -50.01 9 A VAL 3 72.85 -49.05 9 A ALA 16 -160.08 99.51 9 A THR 19 64.46 -7.16 9 A ALA 20 -94.68 36.35 9 A ARG 25 -96.12 -73.42 9 A LYS 49 74.20 103.36 9 A LYS 59 -146.01 -54.27 9 A PRO 88 -61.92 -71.44 9 A VAL 113 -69.90 87.92 9 A ASN 114 166.54 -39.04 10 A GLN 4 -108.75 47.21 10 A GLN 6 64.35 70.09 10 A LYS 18 -110.36 77.43 10 A LEU 26 -143.02 36.94 10 A ALA 30 -99.04 -68.19 10 A GLN 31 -174.33 -46.86 10 A PHE 48 -100.00 -61.11 10 A LYS 49 -170.72 110.31 10 A LYS 59 -158.14 -69.80 10 A VAL 79 -160.23 117.46 10 A SER 83 63.18 -175.01 10 A SER 84 -152.03 -63.13 10 A PRO 88 -75.48 -80.68 10 A PRO 105 -70.75 -72.46 10 A ASN 114 161.29 -24.39 10 A ALA 130 -124.31 -156.64 11 A PRO 13 -61.30 87.82 11 A ALA 20 -90.30 42.42 11 A GLN 23 -132.94 -62.95 11 A THR 24 71.16 -37.38 11 A ASP 35 173.99 -26.46 11 A LYS 49 -160.43 105.64 11 A LYS 59 -145.86 -77.59 11 A SER 83 67.06 -178.26 11 A SER 84 -154.92 -58.04 11 A ALA 85 -101.13 -66.60 11 A LEU 87 -118.42 77.82 11 A PRO 88 -73.63 -78.97 11 A VAL 113 -69.26 88.79 11 A ASN 114 164.11 -27.19 11 A SER 126 -59.19 103.46 12 A GLU 5 -162.52 -53.24 12 A GLN 6 64.47 81.73 12 A ALA 20 -93.32 41.98 12 A THR 24 -81.06 44.15 12 A LEU 26 -167.02 88.21 12 A PRO 28 -77.08 20.72 12 A TYR 29 -173.24 107.95 12 A LYS 49 -178.91 103.25 12 A LYS 59 -150.92 -77.81 12 A PRO 88 -75.97 -73.06 12 A ALA 101 -102.78 61.78 12 A PRO 105 -69.00 -81.81 12 A VAL 113 -69.80 89.35 12 A ASN 114 160.94 -16.53 12 A SER 126 -56.43 103.66 12 A ALA 130 -79.24 46.31 13 A VAL 8 61.26 61.17 13 A PRO 13 -76.91 40.28 13 A ALA 21 -146.91 -54.04 13 A PRO 22 -68.40 -88.20 13 A ASP 35 -83.13 39.58 13 A TRP 37 -127.27 -51.99 13 A LYS 49 -167.88 101.41 13 A LYS 59 -150.79 -84.61 13 A SER 84 -144.35 43.49 13 A PRO 88 -78.05 -75.14 13 A ALA 101 -108.08 67.69 13 A ASN 114 158.58 -12.35 13 A ALA 130 -168.33 -169.24 14 A VAL 3 -90.42 -60.09 14 A GLU 5 -77.39 49.97 14 A GLN 6 -168.45 85.25 14 A ASP 17 -153.66 -58.99 14 A ALA 20 -102.58 59.01 14 A ALA 21 -137.80 -63.69 14 A GLN 23 -83.53 -138.98 14 A THR 24 74.33 -31.94 14 A ALA 30 -137.61 -37.01 14 A GLN 31 60.55 -92.67 14 A ALA 32 59.99 13.33 14 A ASP 35 -85.93 -103.66 14 A LYS 49 67.99 102.57 14 A SER 83 65.70 177.91 14 A SER 84 -139.17 -69.70 14 A ALA 85 -98.36 -75.83 14 A ALA 101 -117.11 73.98 14 A ASN 114 157.18 -9.87 15 A LYS 18 -140.83 58.01 15 A ALA 20 -108.40 40.16 15 A PRO 22 -74.07 -150.92 15 A ALA 30 -152.95 -52.29 15 A ALA 32 -94.59 57.00 15 A ASN 36 75.80 -15.15 15 A PRO 88 -77.33 -83.96 15 A ALA 101 -113.37 53.09 15 A ASN 114 161.61 -28.16 15 A ALA 130 69.81 -63.92 16 A GLN 4 -83.87 37.86 16 A GLN 23 -86.17 43.95 16 A ALA 30 59.15 -89.68 16 A GLN 31 -152.42 28.98 16 A LYS 49 -172.76 102.80 16 A LYS 59 -154.47 -67.68 16 A PRO 88 -79.67 -83.01 16 A ALA 101 -114.04 73.41 16 A PRO 108 -94.64 45.77 16 A VAL 113 -69.15 89.78 16 A ASN 114 161.67 -18.27 16 A SER 126 -57.63 103.20 16 A ALA 130 -69.68 94.34 17 A VAL 8 51.17 81.23 17 A ALA 16 70.70 -62.67 17 A ASP 17 56.31 71.65 17 A ALA 20 -79.19 45.86 17 A PRO 22 -77.96 32.05 17 A THR 24 -81.18 36.25 17 A LEU 26 -171.72 98.00 17 A ASN 36 -146.43 23.07 17 A PHE 48 -106.71 -60.28 17 A LYS 49 -164.99 102.93 17 A LYS 59 -142.04 -75.42 17 A LEU 87 -116.51 71.11 17 A ASN 114 158.92 -15.21 17 A SER 126 -56.54 104.01 18 A GLN 4 172.69 79.80 18 A VAL 8 -146.99 31.58 18 A LEU 26 -150.83 37.53 18 A GLN 31 -89.30 43.03 18 A LYS 49 -174.82 104.14 18 A LYS 59 -149.71 -75.16 18 A SER 83 66.93 176.95 18 A SER 84 -158.63 -67.74 18 A ALA 85 -90.23 -76.19 18 A PRO 88 -76.90 -75.28 18 A ALA 101 -101.13 64.30 18 A ASN 114 157.79 -25.03 18 A SER 126 -57.23 103.11 18 A ALA 130 -155.51 39.46 19 A VAL 3 60.60 87.14 19 A GLN 4 -108.90 78.48 19 A ALA 20 -115.31 54.62 19 A THR 24 -89.54 45.19 19 A ARG 25 -85.47 -76.60 19 A GLN 31 -162.57 108.45 19 A LYS 49 -162.14 102.09 19 A LYS 59 -102.45 -72.63 19 A SER 83 62.05 179.64 19 A SER 84 -154.58 -74.36 19 A PRO 88 -76.15 -79.60 19 A ASP 110 -67.72 1.90 19 A ASN 114 160.87 -26.53 20 A GLN 4 -179.95 82.89 20 A GLN 6 -92.82 -60.28 20 A ARG 15 -126.14 -78.03 20 A PRO 22 -69.19 -79.27 20 A LEU 26 -169.00 36.37 20 A THR 27 -127.17 -53.75 20 A GLN 31 -90.48 53.06 20 A ASN 36 -88.59 44.35 20 A LYS 49 -175.35 102.76 20 A LYS 59 -150.75 -76.83 20 A ALA 101 -106.18 74.30 20 A VAL 113 -69.49 89.52 20 A ASN 114 162.51 -25.14 20 A SER 126 -58.66 102.80 20 A ALA 130 -146.82 13.68 lowest energy, model 1 The structure of HasB CTD 1 N N A ASN 36 A ASN 35 HELX_P A PHE 48 A PHE 47 1 1 13 A PRO 52 A PRO 51 HELX_P A LEU 58 A LEU 57 1 2 7 A PRO 88 A PRO 87 HELX_P A ALA 101 A ALA 100 1 3 14 A PRO 108 A PRO 107 HELX_P A TYR 112 A TYR 111 5 4 5 TRANSPORT PROTEIN HasB CTD, tonb-like protein, hemophore, HEME acquisition system, transport protein Q79AD1_SERMA UNP 1 133 Q79AD1 KVQEQSVGAPPPGRADKTAAPQTRLTPYAQAGEDNWRSRISGRLNRFKRYPKDALRLKRQGVGQVRFTLDRQGHVLAVTL VSSAGLPSLDREIQALVKRASPLPTPPADAYVNGTVELTLPIDFSLRGAGF 133 263 2M2K 2 132 Q79AD1 A 1 1 131 3 anti-parallel anti-parallel A VAL 76 A VAL 75 A SER 84 A SER 83 A GLY 62 A GLY 61 A LEU 70 A LEU 69 A VAL 117 A VAL 116 A PHE 125 A PHE 124