1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Proudfoot, A. Serrano, P. Geralt, M. Wuthrich, K. Partnership for Stem Cell Biology (STEMCELL) Joint Center for Structural Genomics (JCSG) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking To be Published 0353 NMR Structure of the homeodomain transcription factor Gbx1 from Homo sapiens 10.2210/pdb2m34/pdb pdb_00002m34 8346.700 Homeobox protein GBX-1 DNA binding Homeobox residues 256-325 1 man polymer Gastrulation and brain-specific homeobox protein 1 no no SAPGGKSRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRIKAGNVS SAPGGKSRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRIKAGNVS A JCSG-424577 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample GBX1 9606 Homo sapiens 562 Escherichia coli PET46 Joint Center for Structural Genomics JCSG PSI:Biology Partnership for Stem Cell Biology STEMCELL PSI:Biology database_2 pdbx_database_status pdbx_nmr_software pdbx_nmr_spectrometer struct_ref_seq_dif repository Initial release Structure summary Data collection Database references Other 1 0 2013-01-23 1 1 2013-01-30 1 2 2023-06-14 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.status_code_nmr_data _pdbx_nmr_software.name _pdbx_nmr_spectrometer.model _struct_ref_seq_dif.details Y BMRB Y RCSB 2013-01-09 REL REL REL REL target function 80 20 2D 1H-15N HSQC 3D 1H-13C NOESY aliphatic 3D 1H-13C NOESY aromatic 3D 1H-15N NOESY APSY 4D-HACANH APSY 5D-CBCACONH APSY 5D-HACACONH 0.8 mM [U-98% 13C; U-98% 15N] 50 mM 20 mM 5 mM 0.220 6.5 ambient 298 K molecular dynamics 1 closest to the average 0.8 mM [U-98% 13C; U-98% 15N] protein, 50 mM sodium chloride, 20 mM sodium phosphate, 5 mM sodium azide, 95% H2O/5% D2O 95% H2O/5% D2O Guntert P. refinement CYANA Bruker Biospin collection TopSpin Bruker Biospin processing TopSpin Herrmann and Wuthrich structure solution UNIO Herrmann and Wuthrich chemical shift assignment UNIO Luginbuhl, Guntert, Billeter and Wuthrich refinement OPALp Keller and Wuthrich chemical shift assignment CARA 600 Bruker AVANCE Bruker Avance 800 Bruker AVANCE Bruker Avance SER 1 n 1 SER 1 A ALA 2 n 2 ALA 2 A PRO 3 n 3 PRO 3 A GLY 4 n 4 GLY 4 A GLY 5 n 5 GLY 5 A LYS 6 n 6 LYS 6 A SER 7 n 7 SER 7 A ARG 8 n 8 ARG 8 A ARG 9 n 9 ARG 9 A ARG 10 n 10 ARG 10 A ARG 11 n 11 ARG 11 A THR 12 n 12 THR 12 A ALA 13 n 13 ALA 13 A PHE 14 n 14 PHE 14 A THR 15 n 15 THR 15 A SER 16 n 16 SER 16 A GLU 17 n 17 GLU 17 A GLN 18 n 18 GLN 18 A LEU 19 n 19 LEU 19 A LEU 20 n 20 LEU 20 A GLU 21 n 21 GLU 21 A LEU 22 n 22 LEU 22 A GLU 23 n 23 GLU 23 A LYS 24 n 24 LYS 24 A GLU 25 n 25 GLU 25 A PHE 26 n 26 PHE 26 A HIS 27 n 27 HIS 27 A CYS 28 n 28 CYS 28 A LYS 29 n 29 LYS 29 A LYS 30 n 30 LYS 30 A TYR 31 n 31 TYR 31 A LEU 32 n 32 LEU 32 A SER 33 n 33 SER 33 A LEU 34 n 34 LEU 34 A THR 35 n 35 THR 35 A GLU 36 n 36 GLU 36 A ARG 37 n 37 ARG 37 A SER 38 n 38 SER 38 A GLN 39 n 39 GLN 39 A ILE 40 n 40 ILE 40 A ALA 41 n 41 ALA 41 A HIS 42 n 42 HIS 42 A ALA 43 n 43 ALA 43 A LEU 44 n 44 LEU 44 A LYS 45 n 45 LYS 45 A LEU 46 n 46 LEU 46 A SER 47 n 47 SER 47 A GLU 48 n 48 GLU 48 A VAL 49 n 49 VAL 49 A GLN 50 n 50 GLN 50 A VAL 51 n 51 VAL 51 A LYS 52 n 52 LYS 52 A ILE 53 n 53 ILE 53 A TRP 54 n 54 TRP 54 A PHE 55 n 55 PHE 55 A GLN 56 n 56 GLN 56 A ASN 57 n 57 ASN 57 A ARG 58 n 58 ARG 58 A ARG 59 n 59 ARG 59 A ALA 60 n 60 ALA 60 A LYS 61 n 61 LYS 61 A TRP 62 n 62 TRP 62 A LYS 63 n 63 LYS 63 A ARG 64 n 64 ARG 64 A ILE 65 n 65 ILE 65 A LYS 66 n 66 LYS 66 A ALA 67 n 67 ALA 67 A GLY 68 n 68 GLY 68 A ASN 69 n 69 ASN 69 A VAL 70 n 70 VAL 70 A SER 71 n 71 SER 71 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 6 A A VAL SER 70 71 -138.78 8 A A VAL SER 70 71 149.34 10 A A VAL SER 70 71 -145.84 17 A A VAL SER 70 71 144.47 1 A ARG 8 0.076 SIDE CHAIN 6 A ARG 8 0.096 SIDE CHAIN 6 A ARG 59 0.128 SIDE CHAIN 7 A ARG 64 0.083 SIDE CHAIN 8 A ARG 59 0.083 SIDE CHAIN 12 A HIS 42 0.072 SIDE CHAIN 12 A ARG 58 0.086 SIDE CHAIN 13 A ARG 59 0.089 SIDE CHAIN 15 A ARG 59 0.080 SIDE CHAIN 17 A TYR 31 0.067 SIDE CHAIN 18 A ARG 64 0.086 SIDE CHAIN 19 A ARG 8 0.095 SIDE CHAIN 19 A ARG 58 0.091 SIDE CHAIN 3 -3.23 0.50 120.30 117.07 A A A NE CZ NH2 ARG ARG ARG 9 9 9 N 12 -10.36 1.60 129.70 119.34 A A A CB CG CD2 HIS HIS HIS 42 42 42 N 13 -3.02 0.50 120.30 117.28 A A A NE CZ NH2 ARG ARG ARG 11 11 11 N 16 3.18 0.50 120.30 123.48 A A A NE CZ NH1 ARG ARG ARG 37 37 37 N 16 -3.67 0.50 120.30 116.63 A A A NE CZ NH2 ARG ARG ARG 37 37 37 N 1 A ARG 8 63.16 -161.04 1 A ARG 9 76.61 -61.12 1 A ARG 10 45.17 20.46 1 A ARG 11 -141.39 14.11 1 A THR 12 -125.34 -166.07 1 A CYS 28 -90.04 -63.34 1 A LYS 45 47.58 25.97 2 A ALA 2 -150.01 85.37 2 A PRO 3 -76.85 -169.74 2 A LYS 6 55.14 -176.59 2 A ARG 9 -153.33 -64.86 2 A THR 12 53.28 -173.75 2 A CYS 28 -103.91 -63.29 2 A ASN 69 -143.01 14.29 3 A ALA 2 -156.74 79.50 3 A ARG 8 -152.52 35.45 3 A ARG 10 -67.71 57.34 3 A THR 12 64.20 115.37 3 A ALA 13 44.59 -84.13 3 A CYS 28 -78.13 -70.82 3 A LYS 30 -132.27 -34.38 3 A ILE 65 -123.80 -50.43 4 A ALA 2 -155.87 85.21 4 A THR 12 52.70 -175.14 4 A CYS 28 -127.33 -51.99 4 A ALA 67 174.72 50.35 5 A SER 7 -142.22 -62.61 5 A ARG 9 -143.48 -55.02 5 A THR 12 67.75 160.73 6 A SER 7 -159.15 -46.07 6 A ARG 10 -60.06 84.44 6 A ARG 11 -166.91 15.92 6 A THR 12 -162.90 -169.77 6 A HIS 27 -67.45 -70.37 6 A ASN 69 42.65 74.01 7 A LYS 6 -69.01 6.41 7 A SER 7 62.64 -85.16 7 A ARG 10 -62.02 32.93 7 A ALA 13 55.14 -77.73 7 A THR 15 -106.54 -164.50 7 A GLN 18 -69.93 2.01 7 A LEU 46 -121.51 -169.83 8 A ARG 10 -58.77 65.02 8 A ARG 11 -154.08 16.71 8 A ALA 43 -55.65 -75.35 8 A LYS 45 62.45 73.52 8 A ALA 67 59.64 -29.39 9 A ARG 10 49.27 23.95 9 A THR 12 70.03 109.18 9 A ALA 13 61.31 -62.57 9 A ASN 69 44.38 76.02 9 A VAL 70 -69.81 7.24 10 A SER 7 61.36 174.60 10 A ARG 10 -59.33 60.57 11 A LYS 6 46.99 13.43 11 A ARG 10 -51.94 101.75 11 A ARG 11 -157.86 12.95 11 A HIS 27 -90.01 -67.87 11 A ALA 67 -46.98 -10.95 12 A ARG 9 -76.03 -70.16 12 A ARG 11 -146.83 36.17 12 A CYS 28 -137.72 -53.07 12 A LYS 45 55.03 13.31 12 A ARG 64 -68.76 2.55 12 A ILE 65 -104.27 -62.84 13 A SER 7 -166.00 -165.79 13 A ARG 9 54.42 -172.48 13 A ARG 10 -61.52 62.39 13 A ALA 13 44.67 -79.49 13 A PHE 14 -115.95 -164.21 13 A LEU 46 -77.14 -169.70 13 A ALA 67 -151.30 13.43 13 A VAL 70 63.38 62.36 14 A THR 12 69.54 171.69 14 A ALA 67 63.19 -44.18 15 A ARG 8 62.00 -177.49 15 A ARG 9 64.72 146.91 15 A ARG 10 -59.13 15.91 15 A THR 12 61.57 114.09 15 A ALA 13 44.35 -65.92 15 A PHE 14 -127.12 -164.63 15 A CYS 28 -130.61 -66.99 15 A ALA 43 -64.23 -74.29 16 A ALA 2 -150.51 85.68 16 A LYS 6 61.85 -36.00 16 A ARG 8 46.47 -164.65 16 A ARG 9 -136.09 -76.60 16 A ARG 11 -141.96 31.03 16 A ALA 67 64.98 -54.86 16 A ASN 69 56.48 13.73 17 A PRO 3 -72.09 -164.89 17 A ARG 10 -61.70 84.68 17 A ARG 11 -171.20 22.49 17 A THR 15 -118.02 -165.94 17 A CYS 28 -122.90 -60.72 18 A ALA 2 -150.48 85.90 18 A SER 7 68.24 -73.39 18 A ARG 10 -66.29 31.46 18 A ALA 13 44.31 -82.07 18 A HIS 27 -151.79 -76.38 18 A ILE 65 -105.41 -67.39 19 A LYS 6 -157.75 34.12 19 A SER 7 62.45 -66.06 19 A ARG 8 58.11 -177.90 19 A ARG 10 -66.30 81.71 19 A ARG 11 -149.80 15.59 19 A CYS 28 -112.93 -71.71 19 A VAL 70 -146.77 39.55 20 A ALA 2 -153.09 84.97 20 A LYS 6 -143.41 57.70 20 A SER 7 -145.85 -49.92 20 A ARG 10 50.83 8.78 20 A THR 12 67.28 109.63 20 A ALA 13 54.96 -66.44 20 A PHE 14 -127.90 -164.37 20 A HIS 27 -79.42 -74.24 20 A SER 33 -68.01 -173.10 20 A ALA 67 64.02 -42.90 closest to the average, model9 NMR Structure of the homeodomain transcription factor Gbx1 from Homo sapiens 1 N N A THR 15 A THR 15 HELX_P A LYS 29 A LYS 29 1 1 15 A SER 33 A SER 33 HELX_P A LEU 44 A LEU 44 1 2 12 A SER 47 A SER 47 HELX_P A ALA 67 A ALA 67 1 3 21 TRANSCRIPTION Homeodomain, DNA binding, TRANSCRIPTION, Structural Genomics, PSI-Biology, Joint Center for Structural Genomics, JCSG, Partnership for Stem Cell Biology, STEMCELL GBX1_HUMAN UNP 1 256 Q14549 APGGKSRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRIKAGNVS 256 325 2M34 2 71 Q14549 A 1 2 71 1 expression tag SER 1 2M34 A Q14549 UNP 1