1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Proudfoot, A.
Serrano, P.
Geralt, M.
Wuthrich, K.
Partnership for Stem Cell Biology (STEMCELL)
Joint Center for Structural Genomics (JCSG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be Published
0353
NMR Structure of the homeodomain transcription factor Gbx1 from Homo sapiens
10.2210/pdb2m34/pdb
pdb_00002m34
8346.700
Homeobox protein GBX-1
DNA binding Homeobox residues 256-325
1
man
polymer
Gastrulation and brain-specific homeobox protein 1
no
no
SAPGGKSRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRIKAGNVS
SAPGGKSRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRIKAGNVS
A
JCSG-424577
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
GBX1
9606
Homo sapiens
562
Escherichia coli
PET46
Joint Center for Structural Genomics
JCSG
PSI:Biology
Partnership for Stem Cell Biology
STEMCELL
PSI:Biology
database_2
pdbx_database_status
pdbx_nmr_software
pdbx_nmr_spectrometer
struct_ref_seq_dif
repository
Initial release
Structure summary
Data collection
Database references
Other
1
0
2013-01-23
1
1
2013-01-30
1
2
2023-06-14
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_nmr_data
_pdbx_nmr_software.name
_pdbx_nmr_spectrometer.model
_struct_ref_seq_dif.details
Y
BMRB
Y
RCSB
2013-01-09
REL
REL
REL
REL
target function
80
20
2D 1H-15N HSQC
3D 1H-13C NOESY aliphatic
3D 1H-13C NOESY aromatic
3D 1H-15N NOESY
APSY 4D-HACANH
APSY 5D-CBCACONH
APSY 5D-HACACONH
0.8
mM
[U-98% 13C; U-98% 15N]
50
mM
20
mM
5
mM
0.220
6.5
ambient
298
K
molecular dynamics
1
closest to the average
0.8 mM [U-98% 13C; U-98% 15N] protein, 50 mM sodium chloride, 20 mM sodium phosphate, 5 mM sodium azide, 95% H2O/5% D2O
95% H2O/5% D2O
Guntert P.
refinement
CYANA
Bruker Biospin
collection
TopSpin
Bruker Biospin
processing
TopSpin
Herrmann and Wuthrich
structure solution
UNIO
Herrmann and Wuthrich
chemical shift assignment
UNIO
Luginbuhl, Guntert, Billeter and Wuthrich
refinement
OPALp
Keller and Wuthrich
chemical shift assignment
CARA
600
Bruker
AVANCE
Bruker Avance
800
Bruker
AVANCE
Bruker Avance
SER
1
n
1
SER
1
A
ALA
2
n
2
ALA
2
A
PRO
3
n
3
PRO
3
A
GLY
4
n
4
GLY
4
A
GLY
5
n
5
GLY
5
A
LYS
6
n
6
LYS
6
A
SER
7
n
7
SER
7
A
ARG
8
n
8
ARG
8
A
ARG
9
n
9
ARG
9
A
ARG
10
n
10
ARG
10
A
ARG
11
n
11
ARG
11
A
THR
12
n
12
THR
12
A
ALA
13
n
13
ALA
13
A
PHE
14
n
14
PHE
14
A
THR
15
n
15
THR
15
A
SER
16
n
16
SER
16
A
GLU
17
n
17
GLU
17
A
GLN
18
n
18
GLN
18
A
LEU
19
n
19
LEU
19
A
LEU
20
n
20
LEU
20
A
GLU
21
n
21
GLU
21
A
LEU
22
n
22
LEU
22
A
GLU
23
n
23
GLU
23
A
LYS
24
n
24
LYS
24
A
GLU
25
n
25
GLU
25
A
PHE
26
n
26
PHE
26
A
HIS
27
n
27
HIS
27
A
CYS
28
n
28
CYS
28
A
LYS
29
n
29
LYS
29
A
LYS
30
n
30
LYS
30
A
TYR
31
n
31
TYR
31
A
LEU
32
n
32
LEU
32
A
SER
33
n
33
SER
33
A
LEU
34
n
34
LEU
34
A
THR
35
n
35
THR
35
A
GLU
36
n
36
GLU
36
A
ARG
37
n
37
ARG
37
A
SER
38
n
38
SER
38
A
GLN
39
n
39
GLN
39
A
ILE
40
n
40
ILE
40
A
ALA
41
n
41
ALA
41
A
HIS
42
n
42
HIS
42
A
ALA
43
n
43
ALA
43
A
LEU
44
n
44
LEU
44
A
LYS
45
n
45
LYS
45
A
LEU
46
n
46
LEU
46
A
SER
47
n
47
SER
47
A
GLU
48
n
48
GLU
48
A
VAL
49
n
49
VAL
49
A
GLN
50
n
50
GLN
50
A
VAL
51
n
51
VAL
51
A
LYS
52
n
52
LYS
52
A
ILE
53
n
53
ILE
53
A
TRP
54
n
54
TRP
54
A
PHE
55
n
55
PHE
55
A
GLN
56
n
56
GLN
56
A
ASN
57
n
57
ASN
57
A
ARG
58
n
58
ARG
58
A
ARG
59
n
59
ARG
59
A
ALA
60
n
60
ALA
60
A
LYS
61
n
61
LYS
61
A
TRP
62
n
62
TRP
62
A
LYS
63
n
63
LYS
63
A
ARG
64
n
64
ARG
64
A
ILE
65
n
65
ILE
65
A
LYS
66
n
66
LYS
66
A
ALA
67
n
67
ALA
67
A
GLY
68
n
68
GLY
68
A
ASN
69
n
69
ASN
69
A
VAL
70
n
70
VAL
70
A
SER
71
n
71
SER
71
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
6
A
A
VAL
SER
70
71
-138.78
8
A
A
VAL
SER
70
71
149.34
10
A
A
VAL
SER
70
71
-145.84
17
A
A
VAL
SER
70
71
144.47
1
A
ARG
8
0.076
SIDE CHAIN
6
A
ARG
8
0.096
SIDE CHAIN
6
A
ARG
59
0.128
SIDE CHAIN
7
A
ARG
64
0.083
SIDE CHAIN
8
A
ARG
59
0.083
SIDE CHAIN
12
A
HIS
42
0.072
SIDE CHAIN
12
A
ARG
58
0.086
SIDE CHAIN
13
A
ARG
59
0.089
SIDE CHAIN
15
A
ARG
59
0.080
SIDE CHAIN
17
A
TYR
31
0.067
SIDE CHAIN
18
A
ARG
64
0.086
SIDE CHAIN
19
A
ARG
8
0.095
SIDE CHAIN
19
A
ARG
58
0.091
SIDE CHAIN
3
-3.23
0.50
120.30
117.07
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
9
9
9
N
12
-10.36
1.60
129.70
119.34
A
A
A
CB
CG
CD2
HIS
HIS
HIS
42
42
42
N
13
-3.02
0.50
120.30
117.28
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
11
11
11
N
16
3.18
0.50
120.30
123.48
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
37
37
37
N
16
-3.67
0.50
120.30
116.63
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
37
37
37
N
1
A
ARG
8
63.16
-161.04
1
A
ARG
9
76.61
-61.12
1
A
ARG
10
45.17
20.46
1
A
ARG
11
-141.39
14.11
1
A
THR
12
-125.34
-166.07
1
A
CYS
28
-90.04
-63.34
1
A
LYS
45
47.58
25.97
2
A
ALA
2
-150.01
85.37
2
A
PRO
3
-76.85
-169.74
2
A
LYS
6
55.14
-176.59
2
A
ARG
9
-153.33
-64.86
2
A
THR
12
53.28
-173.75
2
A
CYS
28
-103.91
-63.29
2
A
ASN
69
-143.01
14.29
3
A
ALA
2
-156.74
79.50
3
A
ARG
8
-152.52
35.45
3
A
ARG
10
-67.71
57.34
3
A
THR
12
64.20
115.37
3
A
ALA
13
44.59
-84.13
3
A
CYS
28
-78.13
-70.82
3
A
LYS
30
-132.27
-34.38
3
A
ILE
65
-123.80
-50.43
4
A
ALA
2
-155.87
85.21
4
A
THR
12
52.70
-175.14
4
A
CYS
28
-127.33
-51.99
4
A
ALA
67
174.72
50.35
5
A
SER
7
-142.22
-62.61
5
A
ARG
9
-143.48
-55.02
5
A
THR
12
67.75
160.73
6
A
SER
7
-159.15
-46.07
6
A
ARG
10
-60.06
84.44
6
A
ARG
11
-166.91
15.92
6
A
THR
12
-162.90
-169.77
6
A
HIS
27
-67.45
-70.37
6
A
ASN
69
42.65
74.01
7
A
LYS
6
-69.01
6.41
7
A
SER
7
62.64
-85.16
7
A
ARG
10
-62.02
32.93
7
A
ALA
13
55.14
-77.73
7
A
THR
15
-106.54
-164.50
7
A
GLN
18
-69.93
2.01
7
A
LEU
46
-121.51
-169.83
8
A
ARG
10
-58.77
65.02
8
A
ARG
11
-154.08
16.71
8
A
ALA
43
-55.65
-75.35
8
A
LYS
45
62.45
73.52
8
A
ALA
67
59.64
-29.39
9
A
ARG
10
49.27
23.95
9
A
THR
12
70.03
109.18
9
A
ALA
13
61.31
-62.57
9
A
ASN
69
44.38
76.02
9
A
VAL
70
-69.81
7.24
10
A
SER
7
61.36
174.60
10
A
ARG
10
-59.33
60.57
11
A
LYS
6
46.99
13.43
11
A
ARG
10
-51.94
101.75
11
A
ARG
11
-157.86
12.95
11
A
HIS
27
-90.01
-67.87
11
A
ALA
67
-46.98
-10.95
12
A
ARG
9
-76.03
-70.16
12
A
ARG
11
-146.83
36.17
12
A
CYS
28
-137.72
-53.07
12
A
LYS
45
55.03
13.31
12
A
ARG
64
-68.76
2.55
12
A
ILE
65
-104.27
-62.84
13
A
SER
7
-166.00
-165.79
13
A
ARG
9
54.42
-172.48
13
A
ARG
10
-61.52
62.39
13
A
ALA
13
44.67
-79.49
13
A
PHE
14
-115.95
-164.21
13
A
LEU
46
-77.14
-169.70
13
A
ALA
67
-151.30
13.43
13
A
VAL
70
63.38
62.36
14
A
THR
12
69.54
171.69
14
A
ALA
67
63.19
-44.18
15
A
ARG
8
62.00
-177.49
15
A
ARG
9
64.72
146.91
15
A
ARG
10
-59.13
15.91
15
A
THR
12
61.57
114.09
15
A
ALA
13
44.35
-65.92
15
A
PHE
14
-127.12
-164.63
15
A
CYS
28
-130.61
-66.99
15
A
ALA
43
-64.23
-74.29
16
A
ALA
2
-150.51
85.68
16
A
LYS
6
61.85
-36.00
16
A
ARG
8
46.47
-164.65
16
A
ARG
9
-136.09
-76.60
16
A
ARG
11
-141.96
31.03
16
A
ALA
67
64.98
-54.86
16
A
ASN
69
56.48
13.73
17
A
PRO
3
-72.09
-164.89
17
A
ARG
10
-61.70
84.68
17
A
ARG
11
-171.20
22.49
17
A
THR
15
-118.02
-165.94
17
A
CYS
28
-122.90
-60.72
18
A
ALA
2
-150.48
85.90
18
A
SER
7
68.24
-73.39
18
A
ARG
10
-66.29
31.46
18
A
ALA
13
44.31
-82.07
18
A
HIS
27
-151.79
-76.38
18
A
ILE
65
-105.41
-67.39
19
A
LYS
6
-157.75
34.12
19
A
SER
7
62.45
-66.06
19
A
ARG
8
58.11
-177.90
19
A
ARG
10
-66.30
81.71
19
A
ARG
11
-149.80
15.59
19
A
CYS
28
-112.93
-71.71
19
A
VAL
70
-146.77
39.55
20
A
ALA
2
-153.09
84.97
20
A
LYS
6
-143.41
57.70
20
A
SER
7
-145.85
-49.92
20
A
ARG
10
50.83
8.78
20
A
THR
12
67.28
109.63
20
A
ALA
13
54.96
-66.44
20
A
PHE
14
-127.90
-164.37
20
A
HIS
27
-79.42
-74.24
20
A
SER
33
-68.01
-173.10
20
A
ALA
67
64.02
-42.90
closest to the average, model9
NMR Structure of the homeodomain transcription factor Gbx1 from Homo sapiens
1
N
N
A
THR
15
A
THR
15
HELX_P
A
LYS
29
A
LYS
29
1
1
15
A
SER
33
A
SER
33
HELX_P
A
LEU
44
A
LEU
44
1
2
12
A
SER
47
A
SER
47
HELX_P
A
ALA
67
A
ALA
67
1
3
21
TRANSCRIPTION
Homeodomain, DNA binding, TRANSCRIPTION, Structural Genomics, PSI-Biology, Joint Center for Structural Genomics, JCSG, Partnership for Stem Cell Biology, STEMCELL
GBX1_HUMAN
UNP
1
256
Q14549
APGGKSRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRIKAGNVS
256
325
2M34
2
71
Q14549
A
1
2
71
1
expression tag
SER
1
2M34
A
Q14549
UNP
1