1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Kwok, R.N. Leen, E.N. Birtley, J.R. Prater, S.N. Simpson, P.J. Curry, S. Matthews, S. Marchant, J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US J.Virol. JOVIAM 0825 0022-538X 87 5318 5330 10.1128/JVI.03151-12 23487472 Structures of the Compact Helical Core Domains of Feline Calicivirus and Murine Norovirus VPg Proteins. 2013 10.2210/pdb2m4h/pdb pdb_00002m4h 8363.147 Feline Calicivirus VPg protein Core Domain 1 man polymer no no IGTYRGRGVALTDDEYDEWREHNASRKLDLSVEDFLMLRHRAALGADDNDAVKFRSWWNSRTKMANDYEDV IGTYRGRGVALTDDEYDEWREHNASRKLDLSVEDFLMLRHRAALGADDNDAVKFRSWWNSRTKMANDYEDV A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n FCV F9 sample ORF1, VPg 11981 Feline calicivirus 469008 Escherichia coli Bl21(DE3) plasmid pQE30 database_2 pdbx_database_status pdbx_nmr_spectrometer repository Initial release Database references Structure summary Data collection Database references Other 1 0 2013-03-27 1 1 2013-05-08 1 2 2016-10-05 1 3 2023-06-14 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.status_code_nmr_data _pdbx_nmr_spectrometer.model BMRB Y RCSB 2013-02-05 REL REL REL REL 1172 373 144 153 197 structures with the lowest energy 100 20 2D 1H-15N HSQC 3D HNCACB 3D CBCA(CO)NH 3D HNCO 3D HBHA(CBCACO)NH 3D 1H-15N NOESY 3D HCCH-TOCSY 3D 1H-13C NOESY 2D 1H-13C HSQC aromatic 2D 1H-13C HSQC aliphatic 2D 1H-15N HSQC 3D HN(CA)CO 100-200 uM [U-99% 13C; U-99% 15N] 300 mM 20 mM 1 mM 100-200 uM [U-99% 13C; U-99% 15N] 300 mM 1 mM 20 mM 100-200 uM [U-99% 13C; U-99% 15N] 300 mM 1 mM 20 mM 15 mg/mL 300 7.0 ambient 283 K 300 7.0 ambient 283 K 300 7.0 Ambient 280 K simulated annealing 1 closest to the average 100-200 uM [U-99% 13C; U-99% 15N] FCV VPg 7-76, 300 mM sodium chloride, 20 mM HEPES, 1 mM sodium azide, 90% H2O/10% D2O 90% H2O/10% D2O 100-200 uM [U-99% 13C; U-99% 15N] FCV VPg 7-76, 300 mM sodium chloride, 1 mM sodium azide, 20 mM HEPES, 100% D2O 100% D2O 100-200 uM [U-99% 13C; U-99% 15N] FCV VPg 7-76, 300 mM sodium chloride, 1 mM sodium azide, 20 mM HEPES, 15 mg/mL Pf1 phage, 90% H2O/10% D2O 90% H2O/10% D2O Cornilescu, Delaglio and Bax geometry optimization TALOS Linge, O'Donoghue and Nilges structure solution ARIA Johnson, One Moon Scientific chemical shift assignment NMRView Johnson, One Moon Scientific data analysis NMRView Zweckstetter et al., 2004 chemical shift assignment MARS Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax data analysis NMRPipe Brunger, Adams, Clore, Gros, Nilges and Read refinement CNS 500 Bruker DRX Bruker DRX 800 Bruker AVANCE Bruker Avance n 1 9 A GLY 10 n 2 GLY 10 A THR 11 n 3 THR 11 A TYR 12 n 4 TYR 12 A ARG 13 n 5 ARG 13 A GLY 14 n 6 GLY 14 A ARG 15 n 7 ARG 15 A GLY 16 n 8 GLY 16 A VAL 17 n 9 VAL 17 A ALA 18 n 10 ALA 18 A LEU 19 n 11 LEU 19 A THR 20 n 12 THR 20 A ASP 21 n 13 ASP 21 A ASP 22 n 14 ASP 22 A GLU 23 n 15 GLU 23 A TYR 24 n 16 TYR 24 A ASP 25 n 17 ASP 25 A GLU 26 n 18 GLU 26 A TRP 27 n 19 TRP 27 A ARG 28 n 20 ARG 28 A GLU 29 n 21 GLU 29 A HIS 30 n 22 HIS 30 A ASN 31 n 23 ASN 31 A ALA 32 n 24 ALA 32 A SER 33 n 25 SER 33 A ARG 34 n 26 ARG 34 A LYS 35 n 27 LYS 35 A LEU 36 n 28 LEU 36 A ASP 37 n 29 ASP 37 A LEU 38 n 30 LEU 38 A SER 39 n 31 SER 39 A VAL 40 n 32 VAL 40 A GLU 41 n 33 GLU 41 A ASP 42 n 34 ASP 42 A PHE 43 n 35 PHE 43 A LEU 44 n 36 LEU 44 A MET 45 n 37 MET 45 A LEU 46 n 38 LEU 46 A ARG 47 n 39 ARG 47 A HIS 48 n 40 HIS 48 A ARG 49 n 41 ARG 49 A ALA 50 n 42 ALA 50 A ALA 51 n 43 ALA 51 A LEU 52 n 44 LEU 52 A GLY 53 n 45 GLY 53 A ALA 54 n 46 ALA 54 A ASP 55 n 47 ASP 55 A ASP 56 n 48 ASP 56 A ASN 57 n 49 ASN 57 A ASP 58 n 50 ASP 58 A ALA 59 n 51 ALA 59 A VAL 60 n 52 VAL 60 A LYS 61 n 53 LYS 61 A PHE 62 n 54 PHE 62 A ARG 63 n 55 ARG 63 A SER 64 n 56 SER 64 A TRP 65 n 57 TRP 65 A TRP 66 n 58 TRP 66 A ASN 67 n 59 ASN 67 A SER 68 n 60 SER 68 A ARG 69 n 61 ARG 69 A THR 70 n 62 THR 70 A LYS 71 n 63 LYS 71 A MET 72 n 64 MET 72 A ALA 73 n 65 ALA 73 A ASN 74 n 66 ASN 74 A ASP 75 n 67 ASP 75 A TYR 76 n 68 TYR 76 A n 69 77 A n 70 78 A n 71 79 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A ILE 9 A ILE 1 1 Y 1 A GLU 77 A GLU 69 1 Y 1 A ASP 78 A ASP 70 1 Y 1 A VAL 79 A VAL 71 1 Y 2 A ILE 9 A ILE 1 1 Y 2 A GLU 77 A GLU 69 1 Y 2 A ASP 78 A ASP 70 1 Y 2 A VAL 79 A VAL 71 1 Y 3 A ILE 9 A ILE 1 1 Y 3 A GLU 77 A GLU 69 1 Y 3 A ASP 78 A ASP 70 1 Y 3 A VAL 79 A VAL 71 1 Y 4 A ILE 9 A ILE 1 1 Y 4 A GLU 77 A GLU 69 1 Y 4 A ASP 78 A ASP 70 1 Y 4 A VAL 79 A VAL 71 1 Y 5 A ILE 9 A ILE 1 1 Y 5 A GLU 77 A GLU 69 1 Y 5 A ASP 78 A ASP 70 1 Y 5 A VAL 79 A VAL 71 1 Y 6 A ILE 9 A ILE 1 1 Y 6 A GLU 77 A GLU 69 1 Y 6 A ASP 78 A ASP 70 1 Y 6 A VAL 79 A VAL 71 1 Y 7 A ILE 9 A ILE 1 1 Y 7 A GLU 77 A GLU 69 1 Y 7 A ASP 78 A ASP 70 1 Y 7 A VAL 79 A VAL 71 1 Y 8 A ILE 9 A ILE 1 1 Y 8 A GLU 77 A GLU 69 1 Y 8 A ASP 78 A ASP 70 1 Y 8 A VAL 79 A VAL 71 1 Y 9 A ILE 9 A ILE 1 1 Y 9 A GLU 77 A GLU 69 1 Y 9 A ASP 78 A ASP 70 1 Y 9 A VAL 79 A VAL 71 1 Y 10 A ILE 9 A ILE 1 1 Y 10 A GLU 77 A GLU 69 1 Y 10 A ASP 78 A ASP 70 1 Y 10 A VAL 79 A VAL 71 1 Y 11 A ILE 9 A ILE 1 1 Y 11 A GLU 77 A GLU 69 1 Y 11 A ASP 78 A ASP 70 1 Y 11 A VAL 79 A VAL 71 1 Y 12 A ILE 9 A ILE 1 1 Y 12 A GLU 77 A GLU 69 1 Y 12 A ASP 78 A ASP 70 1 Y 12 A VAL 79 A VAL 71 1 Y 13 A ILE 9 A ILE 1 1 Y 13 A GLU 77 A GLU 69 1 Y 13 A ASP 78 A ASP 70 1 Y 13 A VAL 79 A VAL 71 1 Y 14 A ILE 9 A ILE 1 1 Y 14 A GLU 77 A GLU 69 1 Y 14 A ASP 78 A ASP 70 1 Y 14 A VAL 79 A VAL 71 1 Y 15 A ILE 9 A ILE 1 1 Y 15 A GLU 77 A GLU 69 1 Y 15 A ASP 78 A ASP 70 1 Y 15 A VAL 79 A VAL 71 1 Y 16 A ILE 9 A ILE 1 1 Y 16 A GLU 77 A GLU 69 1 Y 16 A ASP 78 A ASP 70 1 Y 16 A VAL 79 A VAL 71 1 Y 17 A ILE 9 A ILE 1 1 Y 17 A GLU 77 A GLU 69 1 Y 17 A ASP 78 A ASP 70 1 Y 17 A VAL 79 A VAL 71 1 Y 18 A ILE 9 A ILE 1 1 Y 18 A GLU 77 A GLU 69 1 Y 18 A ASP 78 A ASP 70 1 Y 18 A VAL 79 A VAL 71 1 Y 19 A ILE 9 A ILE 1 1 Y 19 A GLU 77 A GLU 69 1 Y 19 A ASP 78 A ASP 70 1 Y 19 A VAL 79 A VAL 71 1 Y 20 A ILE 9 A ILE 1 1 Y 20 A GLU 77 A GLU 69 1 Y 20 A ASP 78 A ASP 70 1 Y 20 A VAL 79 A VAL 71 1 Y 2 A A O H ALA TYR 73 76 1.59 3 A A OE2 HH12 GLU ARG 29 69 1.59 7 A A HH22 OD2 ARG ASP 47 75 1.60 14 A A O H ALA TYR 73 76 1.58 17 A A O H HIS LEU 48 52 1.60 3 A A CE1 CZ TYR TYR 24 24 -0.096 0.013 1.381 1.285 N 3 A A CZ CE2 TYR TYR 24 24 0.094 0.013 1.381 1.475 N 7 A A CE1 CZ TYR TYR 24 24 -0.083 0.013 1.381 1.298 N 8 A A CE1 CZ TYR TYR 24 24 -0.102 0.013 1.381 1.279 N 8 A A CZ CE2 TYR TYR 24 24 0.102 0.013 1.381 1.483 N 18 A A CE1 CZ TYR TYR 24 24 -0.080 0.013 1.381 1.301 N 18 A A CZ CE2 TYR TYR 24 24 0.078 0.013 1.381 1.459 N 1 A THR 11 -70.70 -111.62 1 A TYR 12 -162.32 -161.70 1 A ARG 15 -80.21 44.83 1 A LEU 19 63.33 171.02 1 A LEU 52 -77.90 -72.41 1 A THR 70 -106.07 -60.73 1 A MET 72 48.94 -166.19 1 A ASN 74 -41.34 80.21 2 A THR 11 -141.76 -143.09 2 A ARG 15 -78.33 47.68 2 A LEU 19 58.74 -179.44 2 A LEU 52 -80.59 -71.79 2 A THR 70 -96.61 -64.80 2 A MET 72 47.52 -166.04 2 A ASN 74 43.84 -87.65 2 A ASP 75 -150.44 34.61 3 A THR 11 -150.61 -143.36 3 A ARG 15 -162.44 37.91 3 A LEU 19 59.47 177.24 3 A ASP 55 -108.48 43.84 3 A MET 72 43.67 -165.37 3 A ALA 73 -166.12 80.55 3 A ASN 74 -19.10 -69.16 3 A ASP 75 -149.87 39.59 4 A THR 11 -130.62 -148.66 4 A TYR 12 -144.87 -156.66 4 A ARG 15 -179.31 33.45 4 A LEU 19 60.86 -172.35 4 A LEU 52 -89.22 -73.16 4 A MET 72 44.68 -163.60 4 A ALA 73 -157.53 84.80 4 A ASN 74 -25.81 -55.82 4 A ASP 75 -159.14 30.62 5 A THR 11 -111.88 -155.50 5 A TYR 12 -132.99 -155.34 5 A ARG 13 -169.48 115.84 5 A LEU 19 62.77 178.27 5 A LEU 36 -109.32 -169.22 5 A LEU 52 -82.99 -77.04 5 A ASP 55 -109.41 47.83 5 A MET 72 43.87 -165.90 5 A ALA 73 -145.55 50.06 5 A ASN 74 18.38 -95.71 6 A THR 11 -141.56 -143.70 6 A ARG 13 -176.51 141.55 6 A ARG 15 -173.34 -166.83 6 A LEU 19 59.51 179.80 6 A THR 20 -67.67 -177.16 6 A LEU 36 -101.90 -168.29 6 A LEU 52 -80.67 -70.02 6 A ASP 55 -118.95 52.64 6 A LYS 71 74.76 32.26 6 A MET 72 50.02 -76.87 6 A ALA 73 98.20 74.66 6 A ASN 74 -47.43 85.32 7 A THR 11 -120.74 -157.05 7 A ARG 15 -149.99 34.18 7 A LEU 19 62.32 165.91 7 A LEU 52 -84.70 -73.95 7 A THR 70 -95.59 -64.83 7 A LYS 71 63.72 85.85 7 A MET 72 -34.67 172.73 7 A ALA 73 -108.97 65.61 7 A ASN 74 -41.14 84.60 8 A THR 11 -114.42 -152.27 8 A TYR 12 -139.17 -157.10 8 A ARG 15 -65.97 28.50 8 A VAL 17 45.60 116.46 8 A LEU 19 60.03 -172.17 8 A ASP 37 -148.05 45.52 8 A LEU 52 -71.68 -75.76 8 A ASN 67 -54.97 -4.08 8 A THR 70 -98.68 -61.30 8 A LYS 71 80.69 9.27 8 A MET 72 44.77 -164.64 8 A ALA 73 -147.05 23.33 8 A ASN 74 50.34 -70.40 9 A THR 11 -87.60 -141.66 9 A ARG 13 -167.71 119.27 9 A LEU 19 59.29 172.54 9 A MET 72 44.59 -165.35 9 A ALA 73 -157.07 73.36 9 A ASN 74 -28.60 -55.52 9 A ASP 75 -148.77 23.06 10 A THR 11 -145.37 -142.64 10 A ARG 15 -76.95 47.83 10 A LEU 19 59.89 179.48 10 A ASP 55 -119.12 51.23 10 A MET 72 43.74 -164.48 10 A ALA 73 -163.10 79.94 10 A ASP 75 -149.58 32.90 11 A THR 11 -156.23 -147.24 11 A ARG 15 -80.05 47.57 11 A LEU 19 54.77 -169.17 11 A LEU 36 -103.00 -168.36 11 A LEU 52 -83.90 -76.55 11 A MET 72 42.48 -162.97 11 A ALA 73 -156.03 71.49 11 A ASN 74 -30.55 80.38 12 A THR 11 -105.13 -150.44 12 A TYR 12 -138.25 -155.77 12 A ARG 13 -170.04 138.83 12 A ARG 15 -178.61 24.93 12 A VAL 17 -38.36 139.31 12 A LEU 19 61.80 175.15 12 A THR 20 -65.89 -169.83 12 A LEU 36 -106.49 -167.07 12 A ASP 37 -144.62 42.66 12 A LEU 52 -78.14 -74.75 12 A THR 70 -103.71 -60.73 12 A MET 72 46.98 -169.33 12 A ASN 74 -11.20 -70.91 13 A THR 11 -127.96 -157.27 13 A ARG 15 -77.69 47.64 13 A LEU 19 62.53 173.60 13 A ASP 55 -115.37 52.41 13 A MET 72 42.86 -167.50 13 A ASN 74 49.96 -80.49 13 A ASP 75 -148.79 23.83 14 A THR 11 -145.20 -147.76 14 A ARG 15 -78.55 47.50 14 A LEU 19 61.65 170.12 14 A ASP 37 -140.63 53.14 14 A LEU 52 -76.30 -74.68 14 A MET 72 42.52 -164.14 14 A ALA 73 -151.30 33.24 14 A ASN 74 43.66 -89.93 15 A THR 11 -104.18 61.83 15 A TYR 12 50.72 -165.60 15 A ARG 13 -171.50 136.62 15 A LEU 19 62.01 172.09 15 A LEU 36 -102.48 -168.46 15 A ASP 37 -148.06 47.44 15 A LEU 52 -83.63 -70.65 15 A THR 70 -94.94 -61.07 15 A MET 72 49.46 -167.17 15 A ALA 73 -156.22 53.81 15 A ASN 74 -4.96 -77.17 16 A THR 11 -136.36 -143.81 16 A ARG 15 -79.23 47.24 16 A LEU 19 62.72 176.14 16 A LEU 36 -110.53 -168.48 16 A ASP 37 -145.74 59.00 16 A LEU 52 -77.83 -71.32 16 A MET 72 49.07 -167.70 16 A ALA 73 -146.02 46.19 16 A ASN 74 6.73 -85.34 17 A TYR 12 51.32 -170.95 17 A ARG 15 -77.89 47.14 17 A LEU 19 61.29 171.34 17 A ASP 37 -141.64 49.15 17 A LEU 52 -80.23 -70.23 17 A MET 72 44.82 -164.50 17 A ASN 74 -18.85 -52.11 17 A ASP 75 -165.16 43.21 18 A THR 11 -125.96 -149.88 18 A ARG 15 -153.92 40.29 18 A LEU 19 59.95 173.46 18 A LEU 52 -80.00 -71.15 18 A MET 72 44.07 -164.96 18 A ALA 73 -147.39 54.05 18 A ASN 74 14.55 -80.90 18 A ASP 75 -147.25 39.27 19 A THR 11 -121.32 -156.44 19 A ARG 15 -145.19 37.68 19 A LEU 19 57.49 -172.95 19 A LEU 36 -109.99 -167.15 19 A LEU 52 -82.69 -72.62 19 A MET 72 40.55 -122.88 19 A ALA 73 165.61 96.37 19 A ASN 74 -62.50 76.24 20 A THR 11 -110.21 -151.97 20 A LEU 19 55.28 -99.86 20 A LEU 52 -88.00 -74.45 20 A MET 72 43.53 -156.62 20 A ASN 74 -23.75 -51.33 20 A ASP 75 -153.09 26.63 Solution structure of the Core Domain (10-76) of the Feline Calicivirus VPg protein 1 N N A THR 20 A THR 12 HELX_P A ARG 34 A ARG 26 1 1 15 A SER 39 A SER 31 HELX_P A GLY 53 A GLY 45 1 2 15 A ASP 56 A ASP 48 HELX_P A THR 70 A THR 62 1 3 15 VIRAL PROTEIN Viral Protein, NS5, VPg POLG_FCVF9 UNP 1 969 P27409 IGTYRGRGVALTDDEYDEWREHNASRKLDLSVEDFLMLRHRAALGADDNDAVKFRSWWNSRTKMANDYEDV 969 1039 2M4H 9 79 P27409 A 1 1 71