1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Kwok, R.N.
Leen, E.N.
Birtley, J.R.
Prater, S.N.
Simpson, P.J.
Curry, S.
Matthews, S.
Marchant, J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
J.Virol.
JOVIAM
0825
0022-538X
87
5318
5330
10.1128/JVI.03151-12
23487472
Structures of the Compact Helical Core Domains of Feline Calicivirus and Murine Norovirus VPg Proteins.
2013
10.2210/pdb2m4h/pdb
pdb_00002m4h
8363.147
Feline Calicivirus VPg protein
Core Domain
1
man
polymer
no
no
IGTYRGRGVALTDDEYDEWREHNASRKLDLSVEDFLMLRHRAALGADDNDAVKFRSWWNSRTKMANDYEDV
IGTYRGRGVALTDDEYDEWREHNASRKLDLSVEDFLMLRHRAALGADDNDAVKFRSWWNSRTKMANDYEDV
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
FCV
F9
sample
ORF1, VPg
11981
Feline calicivirus
469008
Escherichia coli
Bl21(DE3)
plasmid
pQE30
database_2
pdbx_database_status
pdbx_nmr_spectrometer
repository
Initial release
Database references
Structure summary
Data collection
Database references
Other
1
0
2013-03-27
1
1
2013-05-08
1
2
2016-10-05
1
3
2023-06-14
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_nmr_data
_pdbx_nmr_spectrometer.model
BMRB
Y
RCSB
2013-02-05
REL
REL
REL
REL
1172
373
144
153
197
structures with the lowest energy
100
20
2D 1H-15N HSQC
3D HNCACB
3D CBCA(CO)NH
3D HNCO
3D HBHA(CBCACO)NH
3D 1H-15N NOESY
3D HCCH-TOCSY
3D 1H-13C NOESY
2D 1H-13C HSQC aromatic
2D 1H-13C HSQC aliphatic
2D 1H-15N HSQC
3D HN(CA)CO
100-200
uM
[U-99% 13C; U-99% 15N]
300
mM
20
mM
1
mM
100-200
uM
[U-99% 13C; U-99% 15N]
300
mM
1
mM
20
mM
100-200
uM
[U-99% 13C; U-99% 15N]
300
mM
1
mM
20
mM
15
mg/mL
300
7.0
ambient
283
K
300
7.0
ambient
283
K
300
7.0
Ambient
280
K
simulated annealing
1
closest to the average
100-200 uM [U-99% 13C; U-99% 15N] FCV VPg 7-76, 300 mM sodium chloride, 20 mM HEPES, 1 mM sodium azide, 90% H2O/10% D2O
90% H2O/10% D2O
100-200 uM [U-99% 13C; U-99% 15N] FCV VPg 7-76, 300 mM sodium chloride, 1 mM sodium azide, 20 mM HEPES, 100% D2O
100% D2O
100-200 uM [U-99% 13C; U-99% 15N] FCV VPg 7-76, 300 mM sodium chloride, 1 mM sodium azide, 20 mM HEPES, 15 mg/mL Pf1 phage, 90% H2O/10% D2O
90% H2O/10% D2O
Cornilescu, Delaglio and Bax
geometry optimization
TALOS
Linge, O'Donoghue and Nilges
structure solution
ARIA
Johnson, One Moon Scientific
chemical shift assignment
NMRView
Johnson, One Moon Scientific
data analysis
NMRView
Zweckstetter et al., 2004
chemical shift assignment
MARS
Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
data analysis
NMRPipe
Brunger, Adams, Clore, Gros, Nilges and Read
refinement
CNS
500
Bruker
DRX
Bruker DRX
800
Bruker
AVANCE
Bruker Avance
n
1
9
A
GLY
10
n
2
GLY
10
A
THR
11
n
3
THR
11
A
TYR
12
n
4
TYR
12
A
ARG
13
n
5
ARG
13
A
GLY
14
n
6
GLY
14
A
ARG
15
n
7
ARG
15
A
GLY
16
n
8
GLY
16
A
VAL
17
n
9
VAL
17
A
ALA
18
n
10
ALA
18
A
LEU
19
n
11
LEU
19
A
THR
20
n
12
THR
20
A
ASP
21
n
13
ASP
21
A
ASP
22
n
14
ASP
22
A
GLU
23
n
15
GLU
23
A
TYR
24
n
16
TYR
24
A
ASP
25
n
17
ASP
25
A
GLU
26
n
18
GLU
26
A
TRP
27
n
19
TRP
27
A
ARG
28
n
20
ARG
28
A
GLU
29
n
21
GLU
29
A
HIS
30
n
22
HIS
30
A
ASN
31
n
23
ASN
31
A
ALA
32
n
24
ALA
32
A
SER
33
n
25
SER
33
A
ARG
34
n
26
ARG
34
A
LYS
35
n
27
LYS
35
A
LEU
36
n
28
LEU
36
A
ASP
37
n
29
ASP
37
A
LEU
38
n
30
LEU
38
A
SER
39
n
31
SER
39
A
VAL
40
n
32
VAL
40
A
GLU
41
n
33
GLU
41
A
ASP
42
n
34
ASP
42
A
PHE
43
n
35
PHE
43
A
LEU
44
n
36
LEU
44
A
MET
45
n
37
MET
45
A
LEU
46
n
38
LEU
46
A
ARG
47
n
39
ARG
47
A
HIS
48
n
40
HIS
48
A
ARG
49
n
41
ARG
49
A
ALA
50
n
42
ALA
50
A
ALA
51
n
43
ALA
51
A
LEU
52
n
44
LEU
52
A
GLY
53
n
45
GLY
53
A
ALA
54
n
46
ALA
54
A
ASP
55
n
47
ASP
55
A
ASP
56
n
48
ASP
56
A
ASN
57
n
49
ASN
57
A
ASP
58
n
50
ASP
58
A
ALA
59
n
51
ALA
59
A
VAL
60
n
52
VAL
60
A
LYS
61
n
53
LYS
61
A
PHE
62
n
54
PHE
62
A
ARG
63
n
55
ARG
63
A
SER
64
n
56
SER
64
A
TRP
65
n
57
TRP
65
A
TRP
66
n
58
TRP
66
A
ASN
67
n
59
ASN
67
A
SER
68
n
60
SER
68
A
ARG
69
n
61
ARG
69
A
THR
70
n
62
THR
70
A
LYS
71
n
63
LYS
71
A
MET
72
n
64
MET
72
A
ALA
73
n
65
ALA
73
A
ASN
74
n
66
ASN
74
A
ASP
75
n
67
ASP
75
A
TYR
76
n
68
TYR
76
A
n
69
77
A
n
70
78
A
n
71
79
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
ILE
9
A
ILE
1
1
Y
1
A
GLU
77
A
GLU
69
1
Y
1
A
ASP
78
A
ASP
70
1
Y
1
A
VAL
79
A
VAL
71
1
Y
2
A
ILE
9
A
ILE
1
1
Y
2
A
GLU
77
A
GLU
69
1
Y
2
A
ASP
78
A
ASP
70
1
Y
2
A
VAL
79
A
VAL
71
1
Y
3
A
ILE
9
A
ILE
1
1
Y
3
A
GLU
77
A
GLU
69
1
Y
3
A
ASP
78
A
ASP
70
1
Y
3
A
VAL
79
A
VAL
71
1
Y
4
A
ILE
9
A
ILE
1
1
Y
4
A
GLU
77
A
GLU
69
1
Y
4
A
ASP
78
A
ASP
70
1
Y
4
A
VAL
79
A
VAL
71
1
Y
5
A
ILE
9
A
ILE
1
1
Y
5
A
GLU
77
A
GLU
69
1
Y
5
A
ASP
78
A
ASP
70
1
Y
5
A
VAL
79
A
VAL
71
1
Y
6
A
ILE
9
A
ILE
1
1
Y
6
A
GLU
77
A
GLU
69
1
Y
6
A
ASP
78
A
ASP
70
1
Y
6
A
VAL
79
A
VAL
71
1
Y
7
A
ILE
9
A
ILE
1
1
Y
7
A
GLU
77
A
GLU
69
1
Y
7
A
ASP
78
A
ASP
70
1
Y
7
A
VAL
79
A
VAL
71
1
Y
8
A
ILE
9
A
ILE
1
1
Y
8
A
GLU
77
A
GLU
69
1
Y
8
A
ASP
78
A
ASP
70
1
Y
8
A
VAL
79
A
VAL
71
1
Y
9
A
ILE
9
A
ILE
1
1
Y
9
A
GLU
77
A
GLU
69
1
Y
9
A
ASP
78
A
ASP
70
1
Y
9
A
VAL
79
A
VAL
71
1
Y
10
A
ILE
9
A
ILE
1
1
Y
10
A
GLU
77
A
GLU
69
1
Y
10
A
ASP
78
A
ASP
70
1
Y
10
A
VAL
79
A
VAL
71
1
Y
11
A
ILE
9
A
ILE
1
1
Y
11
A
GLU
77
A
GLU
69
1
Y
11
A
ASP
78
A
ASP
70
1
Y
11
A
VAL
79
A
VAL
71
1
Y
12
A
ILE
9
A
ILE
1
1
Y
12
A
GLU
77
A
GLU
69
1
Y
12
A
ASP
78
A
ASP
70
1
Y
12
A
VAL
79
A
VAL
71
1
Y
13
A
ILE
9
A
ILE
1
1
Y
13
A
GLU
77
A
GLU
69
1
Y
13
A
ASP
78
A
ASP
70
1
Y
13
A
VAL
79
A
VAL
71
1
Y
14
A
ILE
9
A
ILE
1
1
Y
14
A
GLU
77
A
GLU
69
1
Y
14
A
ASP
78
A
ASP
70
1
Y
14
A
VAL
79
A
VAL
71
1
Y
15
A
ILE
9
A
ILE
1
1
Y
15
A
GLU
77
A
GLU
69
1
Y
15
A
ASP
78
A
ASP
70
1
Y
15
A
VAL
79
A
VAL
71
1
Y
16
A
ILE
9
A
ILE
1
1
Y
16
A
GLU
77
A
GLU
69
1
Y
16
A
ASP
78
A
ASP
70
1
Y
16
A
VAL
79
A
VAL
71
1
Y
17
A
ILE
9
A
ILE
1
1
Y
17
A
GLU
77
A
GLU
69
1
Y
17
A
ASP
78
A
ASP
70
1
Y
17
A
VAL
79
A
VAL
71
1
Y
18
A
ILE
9
A
ILE
1
1
Y
18
A
GLU
77
A
GLU
69
1
Y
18
A
ASP
78
A
ASP
70
1
Y
18
A
VAL
79
A
VAL
71
1
Y
19
A
ILE
9
A
ILE
1
1
Y
19
A
GLU
77
A
GLU
69
1
Y
19
A
ASP
78
A
ASP
70
1
Y
19
A
VAL
79
A
VAL
71
1
Y
20
A
ILE
9
A
ILE
1
1
Y
20
A
GLU
77
A
GLU
69
1
Y
20
A
ASP
78
A
ASP
70
1
Y
20
A
VAL
79
A
VAL
71
1
Y
2
A
A
O
H
ALA
TYR
73
76
1.59
3
A
A
OE2
HH12
GLU
ARG
29
69
1.59
7
A
A
HH22
OD2
ARG
ASP
47
75
1.60
14
A
A
O
H
ALA
TYR
73
76
1.58
17
A
A
O
H
HIS
LEU
48
52
1.60
3
A
A
CE1
CZ
TYR
TYR
24
24
-0.096
0.013
1.381
1.285
N
3
A
A
CZ
CE2
TYR
TYR
24
24
0.094
0.013
1.381
1.475
N
7
A
A
CE1
CZ
TYR
TYR
24
24
-0.083
0.013
1.381
1.298
N
8
A
A
CE1
CZ
TYR
TYR
24
24
-0.102
0.013
1.381
1.279
N
8
A
A
CZ
CE2
TYR
TYR
24
24
0.102
0.013
1.381
1.483
N
18
A
A
CE1
CZ
TYR
TYR
24
24
-0.080
0.013
1.381
1.301
N
18
A
A
CZ
CE2
TYR
TYR
24
24
0.078
0.013
1.381
1.459
N
1
A
THR
11
-70.70
-111.62
1
A
TYR
12
-162.32
-161.70
1
A
ARG
15
-80.21
44.83
1
A
LEU
19
63.33
171.02
1
A
LEU
52
-77.90
-72.41
1
A
THR
70
-106.07
-60.73
1
A
MET
72
48.94
-166.19
1
A
ASN
74
-41.34
80.21
2
A
THR
11
-141.76
-143.09
2
A
ARG
15
-78.33
47.68
2
A
LEU
19
58.74
-179.44
2
A
LEU
52
-80.59
-71.79
2
A
THR
70
-96.61
-64.80
2
A
MET
72
47.52
-166.04
2
A
ASN
74
43.84
-87.65
2
A
ASP
75
-150.44
34.61
3
A
THR
11
-150.61
-143.36
3
A
ARG
15
-162.44
37.91
3
A
LEU
19
59.47
177.24
3
A
ASP
55
-108.48
43.84
3
A
MET
72
43.67
-165.37
3
A
ALA
73
-166.12
80.55
3
A
ASN
74
-19.10
-69.16
3
A
ASP
75
-149.87
39.59
4
A
THR
11
-130.62
-148.66
4
A
TYR
12
-144.87
-156.66
4
A
ARG
15
-179.31
33.45
4
A
LEU
19
60.86
-172.35
4
A
LEU
52
-89.22
-73.16
4
A
MET
72
44.68
-163.60
4
A
ALA
73
-157.53
84.80
4
A
ASN
74
-25.81
-55.82
4
A
ASP
75
-159.14
30.62
5
A
THR
11
-111.88
-155.50
5
A
TYR
12
-132.99
-155.34
5
A
ARG
13
-169.48
115.84
5
A
LEU
19
62.77
178.27
5
A
LEU
36
-109.32
-169.22
5
A
LEU
52
-82.99
-77.04
5
A
ASP
55
-109.41
47.83
5
A
MET
72
43.87
-165.90
5
A
ALA
73
-145.55
50.06
5
A
ASN
74
18.38
-95.71
6
A
THR
11
-141.56
-143.70
6
A
ARG
13
-176.51
141.55
6
A
ARG
15
-173.34
-166.83
6
A
LEU
19
59.51
179.80
6
A
THR
20
-67.67
-177.16
6
A
LEU
36
-101.90
-168.29
6
A
LEU
52
-80.67
-70.02
6
A
ASP
55
-118.95
52.64
6
A
LYS
71
74.76
32.26
6
A
MET
72
50.02
-76.87
6
A
ALA
73
98.20
74.66
6
A
ASN
74
-47.43
85.32
7
A
THR
11
-120.74
-157.05
7
A
ARG
15
-149.99
34.18
7
A
LEU
19
62.32
165.91
7
A
LEU
52
-84.70
-73.95
7
A
THR
70
-95.59
-64.83
7
A
LYS
71
63.72
85.85
7
A
MET
72
-34.67
172.73
7
A
ALA
73
-108.97
65.61
7
A
ASN
74
-41.14
84.60
8
A
THR
11
-114.42
-152.27
8
A
TYR
12
-139.17
-157.10
8
A
ARG
15
-65.97
28.50
8
A
VAL
17
45.60
116.46
8
A
LEU
19
60.03
-172.17
8
A
ASP
37
-148.05
45.52
8
A
LEU
52
-71.68
-75.76
8
A
ASN
67
-54.97
-4.08
8
A
THR
70
-98.68
-61.30
8
A
LYS
71
80.69
9.27
8
A
MET
72
44.77
-164.64
8
A
ALA
73
-147.05
23.33
8
A
ASN
74
50.34
-70.40
9
A
THR
11
-87.60
-141.66
9
A
ARG
13
-167.71
119.27
9
A
LEU
19
59.29
172.54
9
A
MET
72
44.59
-165.35
9
A
ALA
73
-157.07
73.36
9
A
ASN
74
-28.60
-55.52
9
A
ASP
75
-148.77
23.06
10
A
THR
11
-145.37
-142.64
10
A
ARG
15
-76.95
47.83
10
A
LEU
19
59.89
179.48
10
A
ASP
55
-119.12
51.23
10
A
MET
72
43.74
-164.48
10
A
ALA
73
-163.10
79.94
10
A
ASP
75
-149.58
32.90
11
A
THR
11
-156.23
-147.24
11
A
ARG
15
-80.05
47.57
11
A
LEU
19
54.77
-169.17
11
A
LEU
36
-103.00
-168.36
11
A
LEU
52
-83.90
-76.55
11
A
MET
72
42.48
-162.97
11
A
ALA
73
-156.03
71.49
11
A
ASN
74
-30.55
80.38
12
A
THR
11
-105.13
-150.44
12
A
TYR
12
-138.25
-155.77
12
A
ARG
13
-170.04
138.83
12
A
ARG
15
-178.61
24.93
12
A
VAL
17
-38.36
139.31
12
A
LEU
19
61.80
175.15
12
A
THR
20
-65.89
-169.83
12
A
LEU
36
-106.49
-167.07
12
A
ASP
37
-144.62
42.66
12
A
LEU
52
-78.14
-74.75
12
A
THR
70
-103.71
-60.73
12
A
MET
72
46.98
-169.33
12
A
ASN
74
-11.20
-70.91
13
A
THR
11
-127.96
-157.27
13
A
ARG
15
-77.69
47.64
13
A
LEU
19
62.53
173.60
13
A
ASP
55
-115.37
52.41
13
A
MET
72
42.86
-167.50
13
A
ASN
74
49.96
-80.49
13
A
ASP
75
-148.79
23.83
14
A
THR
11
-145.20
-147.76
14
A
ARG
15
-78.55
47.50
14
A
LEU
19
61.65
170.12
14
A
ASP
37
-140.63
53.14
14
A
LEU
52
-76.30
-74.68
14
A
MET
72
42.52
-164.14
14
A
ALA
73
-151.30
33.24
14
A
ASN
74
43.66
-89.93
15
A
THR
11
-104.18
61.83
15
A
TYR
12
50.72
-165.60
15
A
ARG
13
-171.50
136.62
15
A
LEU
19
62.01
172.09
15
A
LEU
36
-102.48
-168.46
15
A
ASP
37
-148.06
47.44
15
A
LEU
52
-83.63
-70.65
15
A
THR
70
-94.94
-61.07
15
A
MET
72
49.46
-167.17
15
A
ALA
73
-156.22
53.81
15
A
ASN
74
-4.96
-77.17
16
A
THR
11
-136.36
-143.81
16
A
ARG
15
-79.23
47.24
16
A
LEU
19
62.72
176.14
16
A
LEU
36
-110.53
-168.48
16
A
ASP
37
-145.74
59.00
16
A
LEU
52
-77.83
-71.32
16
A
MET
72
49.07
-167.70
16
A
ALA
73
-146.02
46.19
16
A
ASN
74
6.73
-85.34
17
A
TYR
12
51.32
-170.95
17
A
ARG
15
-77.89
47.14
17
A
LEU
19
61.29
171.34
17
A
ASP
37
-141.64
49.15
17
A
LEU
52
-80.23
-70.23
17
A
MET
72
44.82
-164.50
17
A
ASN
74
-18.85
-52.11
17
A
ASP
75
-165.16
43.21
18
A
THR
11
-125.96
-149.88
18
A
ARG
15
-153.92
40.29
18
A
LEU
19
59.95
173.46
18
A
LEU
52
-80.00
-71.15
18
A
MET
72
44.07
-164.96
18
A
ALA
73
-147.39
54.05
18
A
ASN
74
14.55
-80.90
18
A
ASP
75
-147.25
39.27
19
A
THR
11
-121.32
-156.44
19
A
ARG
15
-145.19
37.68
19
A
LEU
19
57.49
-172.95
19
A
LEU
36
-109.99
-167.15
19
A
LEU
52
-82.69
-72.62
19
A
MET
72
40.55
-122.88
19
A
ALA
73
165.61
96.37
19
A
ASN
74
-62.50
76.24
20
A
THR
11
-110.21
-151.97
20
A
LEU
19
55.28
-99.86
20
A
LEU
52
-88.00
-74.45
20
A
MET
72
43.53
-156.62
20
A
ASN
74
-23.75
-51.33
20
A
ASP
75
-153.09
26.63
Solution structure of the Core Domain (10-76) of the Feline Calicivirus VPg protein
1
N
N
A
THR
20
A
THR
12
HELX_P
A
ARG
34
A
ARG
26
1
1
15
A
SER
39
A
SER
31
HELX_P
A
GLY
53
A
GLY
45
1
2
15
A
ASP
56
A
ASP
48
HELX_P
A
THR
70
A
THR
62
1
3
15
VIRAL PROTEIN
Viral Protein, NS5, VPg
POLG_FCVF9
UNP
1
969
P27409
IGTYRGRGVALTDDEYDEWREHNASRKLDLSVEDFLMLRHRAALGADDNDAVKFRSWWNSRTKMANDYEDV
969
1039
2M4H
9
79
P27409
A
1
1
71