1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Dutta, S.K.
Serrano, P.
Geralt, M.
Wuthrich, K.
Joint Center for Structural Genomics (JCSG)
Partnership for T-Cell Biology (TCELL)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be Published
0353
NMR structure of the SH3 domain of human RAS p21 protein activator (GTPase activating protein) 1
10.2210/pdb2m51/pdb
pdb_00002m51
7268.227
Ras GTPase-activating protein 1
UNP residues 281-341
1
man
polymer
GAP, GTPase-activating protein, RasGAP, Ras p21 protein activator, p120GAP
no
no
GRRRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEVGR
GRRRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEVGR
A
JCSG-422693
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
RASA1, RASA
9606
Homo sapiens
511693
Escherichia coli
BL21
plasmid
SpeedET
Joint Center for Structural Genomics
JCSG
PSI:Biology
Partnership for T-Cell Biology
TCELL
PSI:Biology
database_2
pdbx_nmr_software
pdbx_nmr_spectrometer
struct_ref_seq_dif
pdbx_database_status
repository
Initial release
Data collection
Database references
Other
1
0
2013-03-27
1
1
2023-02-01
1
2
2023-06-14
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_pdbx_nmr_spectrometer.model
_struct_ref_seq_dif.details
_pdbx_database_status.status_code_nmr_data
Y
BMRB
Y
RCSB
2013-02-12
REL
REL
REL
REL
1282
300
458
117
358
target function
80
20
2D 1H-15N HSQC
4D-HACANH-APSY
5D-CBCACONH-APSY
5D-HACACONH-APSY
3D 1H-13C NOESY aliphatic
3D 1H-13C NOESY aliphatic
3D 1H-13C NOESY aromatic
1.2
mM
[U-98% 13C; U-98% 15N]
20
mM
50
mM
5
mM
0.798
6.0
ambient
298
K
simulated annealing
1
closest to the average
1.2 mM [U-98% 13C; U-98% 15N] protein, 20 mM sodium phosphate, 50 mM sodium chloride, 5 mM sodium azide, 90% H2O/10% D2O
90% H2O/10% D2O
G ntert P.
structure solution
CYANA
3.0
Bruker Biospin
collection
TopSpin
Bruker Biospin
processing
TopSpin
Keller and Wuthrich
chemical shift assignment
CARA
Keller and Wuthrich
data analysis
CARA
Herrmann, Guntert and Wuthrich
chemical shift assignment
j-UNIO
Herrmann, Guntert and Wuthrich
peak picking
j-UNIO
Herrmann, Guntert and Wuthrich
structure solution
j-UNIO
Luginbuhl, Guntert, Billeter and Wuthrich
refinement
OPAL
600
Bruker
AVANCE
Bruker Avance
800
Bruker
AVANCE
Bruker Avance
GLY
1
n
1
GLY
1
A
ARG
2
n
2
ARG
2
A
ARG
3
n
3
ARG
3
A
ARG
4
n
4
ARG
4
A
VAL
5
n
5
VAL
5
A
ARG
6
n
6
ARG
6
A
ALA
7
n
7
ALA
7
A
ILE
8
n
8
ILE
8
A
LEU
9
n
9
LEU
9
A
PRO
10
n
10
PRO
10
A
TYR
11
n
11
TYR
11
A
THR
12
n
12
THR
12
A
LYS
13
n
13
LYS
13
A
VAL
14
n
14
VAL
14
A
PRO
15
n
15
PRO
15
A
ASP
16
n
16
ASP
16
A
THR
17
n
17
THR
17
A
ASP
18
n
18
ASP
18
A
GLU
19
n
19
GLU
19
A
ILE
20
n
20
ILE
20
A
SER
21
n
21
SER
21
A
PHE
22
n
22
PHE
22
A
LEU
23
n
23
LEU
23
A
LYS
24
n
24
LYS
24
A
GLY
25
n
25
GLY
25
A
ASP
26
n
26
ASP
26
A
MET
27
n
27
MET
27
A
PHE
28
n
28
PHE
28
A
ILE
29
n
29
ILE
29
A
VAL
30
n
30
VAL
30
A
HIS
31
n
31
HIS
31
A
ASN
32
n
32
ASN
32
A
GLU
33
n
33
GLU
33
A
LEU
34
n
34
LEU
34
A
GLU
35
n
35
GLU
35
A
ASP
36
n
36
ASP
36
A
GLY
37
n
37
GLY
37
A
TRP
38
n
38
TRP
38
A
MET
39
n
39
MET
39
A
TRP
40
n
40
TRP
40
A
VAL
41
n
41
VAL
41
A
THR
42
n
42
THR
42
A
ASN
43
n
43
ASN
43
A
LEU
44
n
44
LEU
44
A
ARG
45
n
45
ARG
45
A
THR
46
n
46
THR
46
A
ASP
47
n
47
ASP
47
A
GLU
48
n
48
GLU
48
A
GLN
49
n
49
GLN
49
A
GLY
50
n
50
GLY
50
A
LEU
51
n
51
LEU
51
A
ILE
52
n
52
ILE
52
A
VAL
53
n
53
VAL
53
A
GLU
54
n
54
GLU
54
A
ASP
55
n
55
ASP
55
A
LEU
56
n
56
LEU
56
A
VAL
57
n
57
VAL
57
A
GLU
58
n
58
GLU
58
A
GLU
59
n
59
GLU
59
A
VAL
60
n
60
VAL
60
A
GLY
61
n
61
GLY
61
A
ARG
62
n
62
ARG
62
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
GLU
48
A
O
GLU
48
A
N
ASN
43
A
N
ASN
43
A
O
TRP
40
A
O
TRP
40
A
N
HIS
31
A
N
HIS
31
A
O
PHE
28
A
O
PHE
28
A
N
VAL
5
A
N
VAL
5
A
N
ARG
6
A
N
ARG
6
A
O
GLU
58
A
O
GLU
58
2
A
ARG
3
0.153
SIDE CHAIN
2
A
ARG
4
0.102
SIDE CHAIN
2
A
ARG
62
0.081
SIDE CHAIN
3
A
ARG
3
0.097
SIDE CHAIN
4
A
ARG
45
0.106
SIDE CHAIN
5
A
ARG
3
0.105
SIDE CHAIN
5
A
ARG
6
0.092
SIDE CHAIN
9
A
ARG
45
0.076
SIDE CHAIN
11
A
ARG
3
0.103
SIDE CHAIN
11
A
ARG
45
0.118
SIDE CHAIN
12
A
ARG
3
0.116
SIDE CHAIN
13
A
ARG
2
0.082
SIDE CHAIN
16
A
ARG
4
0.083
SIDE CHAIN
18
A
TYR
11
0.079
SIDE CHAIN
19
A
ARG
4
0.082
SIDE CHAIN
19
A
ARG
6
0.089
SIDE CHAIN
20
A
ARG
4
0.093
SIDE CHAIN
20
A
ARG
6
0.105
SIDE CHAIN
20
A
ARG
45
0.139
SIDE CHAIN
1
A
THR
46
-155.31
15.07
1
A
GLU
59
-82.93
47.58
2
A
ARG
2
-106.16
-75.98
3
A
ARG
2
-65.10
12.11
3
A
ASP
36
-152.74
47.59
4
A
ARG
2
56.11
-18.25
4
A
HIS
31
-132.75
-30.16
4
A
ASP
36
-168.29
-0.74
4
A
THR
46
-164.00
13.93
5
A
ARG
3
-109.56
-164.48
5
A
LEU
34
-109.82
-169.05
5
A
THR
46
-164.42
11.14
6
A
ARG
3
-124.23
-164.64
6
A
ASP
16
75.45
33.93
6
A
ASP
18
-72.50
20.39
6
A
GLU
35
-92.91
48.09
6
A
ASP
36
-161.28
34.78
6
A
THR
46
-163.77
7.35
7
A
ASP
16
75.48
-11.44
7
A
LEU
34
-125.82
-168.53
7
A
THR
46
-152.96
18.26
7
A
GLU
59
-69.80
78.41
8
A
LEU
34
-120.33
-168.82
8
A
ASP
36
-154.06
22.43
8
A
LEU
44
-67.98
1.31
8
A
THR
46
-146.13
-3.43
9
A
LEU
34
-115.51
-167.49
9
A
ASP
36
-168.16
15.80
10
A
PHE
22
-170.18
-171.23
10
A
LEU
34
-115.10
-163.01
10
A
ASP
36
-153.91
1.48
10
A
LEU
44
-68.70
1.18
10
A
THR
46
-167.39
13.47
11
A
LEU
34
-107.18
-163.45
11
A
THR
46
-147.96
-8.86
11
A
GLU
59
-79.04
37.17
12
A
ARG
2
-142.85
43.03
12
A
ASP
16
73.34
43.83
12
A
LEU
34
-103.64
-168.90
12
A
ASP
36
-159.64
22.65
12
A
THR
46
-159.85
12.82
13
A
ARG
2
-73.44
49.89
13
A
ASP
16
75.50
-9.06
13
A
LEU
34
-108.39
-164.94
13
A
ASP
36
-158.25
6.37
13
A
THR
46
-169.46
16.29
14
A
ARG
2
-144.85
-63.15
14
A
ASP
36
-156.60
19.11
14
A
THR
46
-152.53
14.56
15
A
THR
46
-147.41
-13.27
16
A
ARG
3
-127.36
-169.73
16
A
LEU
34
-101.81
-169.42
16
A
ASP
36
-151.79
29.40
16
A
THR
46
-146.15
20.31
17
A
ASP
36
-143.41
23.31
17
A
THR
46
-169.75
33.51
17
A
ASP
47
66.54
-4.91
18
A
ARG
2
60.46
64.29
18
A
ASP
18
-83.40
35.74
18
A
LEU
34
-100.85
-162.79
18
A
ASP
36
174.20
-0.97
18
A
THR
46
-165.67
-1.61
19
A
LEU
34
-109.46
-165.36
19
A
ASP
36
175.85
18.91
20
A
ASP
36
-169.90
31.03
20
A
LEU
44
-68.87
1.66
20
A
THR
46
-158.95
23.31
20
A
GLU
48
-68.61
98.86
20
A
LEU
56
-140.79
21.86
closest to the average, model1
NMR structure of the SH3 domain of human RAS p21 protein activator (GTPase activating protein) 1
1
N
N
PROTEIN BINDING
SH3 domain of RAS GAP1, PROTEIN BINDING, Structural Genomics, PSI-Biology, Joint Center for Structural Genomics, JCSG, Partnership for T-Cell Biology, TCELL
RASA1_HUMAN
UNP
1
281
P20936
RRRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEVGR
281
341
2M51
2
62
P20936
A
1
2
62
1
expression tag
GLY
1
2M51
A
P20936
UNP
1
5
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
GLU
48
A
GLU
48
A
VAL
53
A
VAL
53
A
TRP
38
A
TRP
38
A
ASN
43
A
ASN
43
A
MET
27
A
MET
27
A
GLU
33
A
GLU
33
A
ARG
4
A
ARG
4
A
ALA
7
A
ALA
7
A
VAL
57
A
VAL
57
A
GLU
58
A
GLU
58