1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Sonti, R.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C11 H12 N2 O2
204.225
D-TRYPTOPHAN
D-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
C
N
7
N
O
N
8
N
O
N
9
N
O
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
H
N
15
N
H
N
16
N
H
N
17
N
N
N
18
R
C
N
19
N
C
N
20
N
O
N
21
N
C
N
22
N
S
N
23
N
O
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
N
N
32
R
C
N
33
N
C
Y
34
N
C
Y
35
N
C
Y
36
N
N
Y
37
N
C
Y
38
N
C
Y
39
N
C
Y
40
N
C
Y
41
N
C
Y
42
N
C
N
43
N
C
N
44
N
O
N
45
N
O
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
N
C
N
60
N
C
N
61
N
O
N
62
N
O
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
N
N
69
S
C
N
70
N
C
N
71
N
O
N
72
N
C
N
73
N
C
N
74
N
C
N
75
N
O
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
N
N
86
S
C
N
87
N
C
N
88
N
O
N
89
N
C
Y
90
N
C
Y
91
N
C
Y
92
N
C
Y
93
N
N
Y
94
N
C
Y
95
N
C
Y
96
N
C
Y
97
N
C
Y
98
N
C
N
99
N
O
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
doub
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
doub
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
Y
38
N
doub
Y
39
N
sing
Y
40
N
sing
N
41
N
sing
Y
42
N
sing
N
43
N
sing
Y
44
N
doub
Y
45
N
sing
Y
46
N
sing
N
47
N
sing
Y
48
N
doub
N
49
N
sing
Y
50
N
sing
N
51
N
sing
Y
52
N
doub
N
53
N
sing
N
54
N
doub
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
doub
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
doub
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
Y
94
N
doub
Y
95
N
sing
Y
96
N
sing
N
97
N
sing
Y
98
N
doub
Y
99
N
sing
Y
100
N
sing
N
101
N
sing
Y
102
N
sing
Y
103
N
doub
N
104
N
sing
Y
105
N
doub
N
106
N
sing
Y
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
GE
Chemistry
0947-6539
19
15175
15189
10.1002/chem.201301722
24115170
Conformational diversity in contryphans from Conus venom: cis-trans isomerisation and aromatic/proline interactions in the 23-membered ring of a 7-residue peptide disulfide loop.
2013
10.2210/pdb2m6g/pdb
pdb_00002m6g
963.090
Contryphan-Lo
1
syn
polymer
Lo959
no
yes
GCP(DTR)DPWC
GCPWDPWC
A
polypeptide(L)
n
n
n
n
n
n
n
n
citation
database_2
pdbx_nmr_spectrometer
struct_conn
struct_site
pdbx_database_status
chem_comp_atom
chem_comp_bond
repository
Initial release
Data collection
Database references
Derived calculations
Other
Data collection
1
0
2013-10-30
1
1
2022-08-24
1
2
2023-06-14
1
3
2023-11-15
_citation.journal_volume
_citation.page_first
_citation.page_last
_citation.title
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_spectrometer.model
_struct_conn.pdbx_leaving_atom_flag
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_pdbx_database_status.status_code_nmr_data
BMRB
Y
PDBJ
2013-03-29
REL
REL
REL
REL
410709
Cone snail
Conus loroisii
sample
structures with the lowest energy
100
10
1
2D 1H-1H TOCSY
2D 1H-13C HSQC aliphatic
2D 1H-13C HSQC aromatic
2D 1H-1H NOESY
2
mM
303
K
torsion angle dynamics
1
with the good disulfide sidechain dihedral angle constraint
2 mM TSP-1, 90% H2O/10% D2O
90% H2O/10% D2O
Guntert, Mumenthaler and Wuthrich
structure solution
CYANA
3
refinement
CYANA
500
Bruker
AVANCE
Bruker Avance
GLY
1
n
1
GLY
1
A
CYS
2
n
2
CYS
2
A
PRO
3
n
3
PRO
3
A
DTR
4
n
4
DTR
4
A
ASP
5
n
5
ASP
5
A
PRO
6
n
6
PRO
6
A
TRP
7
n
7
TRP
7
A
CYS
8
n
8
CYS
8
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
2
-7.80
1.20
103.80
96.00
A
A
A
N
CD
CG
PRO
PRO
PRO
3
3
3
N
3
-12.13
1.20
103.80
91.67
A
A
A
N
CD
CG
PRO
PRO
PRO
3
3
3
N
4
-8.89
1.20
103.80
94.91
A
A
A
N
CD
CG
PRO
PRO
PRO
3
3
3
N
5
-11.51
1.20
103.80
92.29
A
A
A
N
CD
CG
PRO
PRO
PRO
3
3
3
N
6
-14.95
1.20
103.80
88.85
A
A
A
N
CD
CG
PRO
PRO
PRO
3
3
3
N
7
-16.23
2.30
105.40
89.17
A
A
A
CB
CG
CD
PRO
PRO
PRO
3
3
3
N
8
-22.40
2.30
105.40
83.00
A
A
A
CB
CG
CD
PRO
PRO
PRO
3
3
3
N
8
-19.33
1.20
103.80
84.47
A
A
A
N
CD
CG
PRO
PRO
PRO
3
3
3
N
9
-22.39
2.30
105.40
83.01
A
A
A
CB
CG
CD
PRO
PRO
PRO
3
3
3
N
9
-19.34
1.20
103.80
84.46
A
A
A
N
CD
CG
PRO
PRO
PRO
3
3
3
N
10
-22.43
2.30
105.40
82.97
A
A
A
CB
CG
CD
PRO
PRO
PRO
3
3
3
N
10
-19.30
1.20
103.80
84.50
A
A
A
N
CD
CG
PRO
PRO
PRO
3
3
3
N
3
A
A
CG
CD
PRO
PRO
3
3
0.223
0.027
1.512
1.735
N
5
A
A
CG
CD
PRO
PRO
3
3
0.197
0.027
1.512
1.709
N
5
A
A
CG
CD
PRO
PRO
6
6
0.241
0.033
1.502
1.743
N
6
A
A
CG
CD
PRO
PRO
3
3
0.353
0.027
1.512
1.865
N
7
A
A
CG
CD
PRO
PRO
3
3
0.426
0.027
1.512
1.938
N
8
A
A
CG
CD
PRO
PRO
3
3
0.591
0.027
1.512
2.103
N
9
A
A
CG
CD
PRO
PRO
3
3
0.591
0.027
1.512
2.103
N
10
A
A
CG
CD
PRO
PRO
3
3
0.591
0.027
1.512
2.103
N
1
A
DTR
4
148.72
-56.59
2
A
DTR
4
147.68
-56.10
3
A
DTR
4
144.32
-54.26
4
A
DTR
4
146.06
-55.19
5
A
DTR
4
145.43
-54.87
6
A
DTR
4
145.78
-55.00
7
A
DTR
4
140.83
-54.06
8
A
DTR
4
148.98
-56.82
9
A
DTR
4
145.68
-54.94
with the good disulfide sidechain dihedral angle constraint, model1
Solution structure of cis(C2-P3) trans (D5-P6) form of lO959 in water
1
N
N
disulf
2.100
A
CYS
2
A
SG
CYS
2
1_555
A
CYS
8
A
SG
CYS
8
1_555
covale
1.325
both
A
PRO
3
A
C
PRO
3
1_555
A
DTR
4
A
N
DTR
4
1_555
covale
1.328
both
A
DTR
4
A
C
DTR
4
1_555
A
ASP
5
A
N
ASP
5
1_555
TOXIN
Lo959, water, TOXIN
A
CYS
2
A
CYS
2
1
A
PRO
3
A
PRO
3
0.02
A
CYS
2
A
CYS
2
2
A
PRO
3
A
PRO
3
0.00
A
CYS
2
A
CYS
2
3
A
PRO
3
A
PRO
3
-0.10
A
CYS
2
A
CYS
2
4
A
PRO
3
A
PRO
3
-0.10
A
CYS
2
A
CYS
2
5
A
PRO
3
A
PRO
3
0.02
A
CYS
2
A
CYS
2
6
A
PRO
3
A
PRO
3
-0.02
A
CYS
2
A
CYS
2
7
A
PRO
3
A
PRO
3
-0.06
A
CYS
2
A
CYS
2
8
A
PRO
3
A
PRO
3
-0.02
A
CYS
2
A
CYS
2
9
A
PRO
3
A
PRO
3
-0.04
A
CYS
2
A
CYS
2
10
A
PRO
3
A
PRO
3
-0.06
COW_CONLO
UNP
1
1
P0C250
GCP(DTR)DPWC
1
8
2M6G
1
8
P0C250
A
1
1
8
BINDING SITE FOR RESIDUE DTR A 4
A
DTR
4
Software
4
A
PRO
3
A
PRO
3
4
1_555
A
ASP
5
A
ASP
5
4
1_555
A
PRO
6
A
PRO
6
4
1_555
A
CYS
8
A
CYS
8
4
1_555