1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Majumder, S. Ji, Y. Millard, M. Borra, R. Bi, T. Elnagar, A.Y. Neamati, N. Camarero, J.A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US J.Am.Chem.Soc. JACSAT 0004 0002-7863 135 11623 11633 10.1021/ja405108p 23848581 In Vivo Activation of the p53 Tumor Suppressor Pathway by an Engineered Cyclotide. 2013 10.2210/pdb2m86/pdb pdb_00002m86 5291.000 MCo-PMI 1 man polymer 14706.715 E3 ubiquitin-protein ligase Mdm2 UNP residues 17-125 1 man polymer Double minute 2 protein, Hdm2, Oncoprotein Mdm2, p53-binding protein Mdm2 no no SGSGASKAPTSFAEYWNLLSAGGVCPKILQRCRRDSDCPGACICRGNGYCG SGSGASKAPTSFAEYWNLLSAGGVCPKILQRCRRDSDCPGACICRGNGYCG A polypeptide(L) no no GSSHHHHHHSSGLVPRGSHMSQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVY CSNDLLGDLFGVPSFSVKEHRKIYTMIYRNLVVVNQQESSDSGTSVSEN GSSHHHHHHSSGLVPRGSHMSQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVY CSNDLLGDLFGVPSFSVKEHRKIYTMIYRNLVVVNQQESSDSGTSVSEN B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample 32630 synthetic construct 562 Escherichia coli plasmid pTXB1 human sample MDM2 9606 Homo sapiens 562 Escherichia coli plasmid pet28a database_2 pdbx_database_status pdbx_nmr_spectrometer struct_conn struct_ref_seq_dif repository Initial release Database references Data collection Database references Derived calculations Other 1 0 2013-07-31 1 1 2013-08-21 1 2 2023-06-14 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.status_code_nmr_data _pdbx_nmr_spectrometer.model _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_ref_seq_dif.details BMRB Y RCSB 2013-05-07 REL REL REL REL 1040 342 187 155 320 0 0 125 125 structures with the lowest energy 1000 10 0.30 5 1.04 2D 1H-15N HSQC 2D 1H-15N HSQC 2D 1H-13C HSQC 3D 1H-15N NOESY 3D 1H-15N TOCSY 2D 1H-1H NOESY 3D 1H-13C NOESY aliphatic 3D 1H-15N NOESY 3D 1H-15N TOCSY 3D HNCA 3D HN(CO)CA 3D HNCACB 2D 1H-1H TOCSY 0.2 mM 0.2 mM [U-99% 13C; U-99% 15N] 0.2 mM [U-99% 15N] 0.2 mM 0.2 mM 0.2 mM 0.133 6.5 ambient 300 K DGSA-distance geometry simulated annealing 1 lowest energy 0.2 mM MCo-PMI, 0.2 mM [U-99% 13C; U-99% 15N] Hdm2, 90% H2O/10% D2O 90% H2O/10% D2O 0.2 mM [U-99% 15N] Mo-PMI, 0.2 mM Hdm2, 90% H2O/10% D2O 90% H2O/10% D2O 0.2 mM MCo-PMI, 0.2 mM Hdm2, 90% H2O/10% D2O 90% H2O/10% D2O Karplus, M. refinement CHRMM 36 Guntert, Mumenthaler and Wuthrich structure solution CYANA 2.1 700 Bruker AVANCE Bruker Avance SER 1 n 1 SER 1 A GLY 2 n 2 GLY 2 A SER 3 n 3 SER 3 A GLY 4 n 4 GLY 4 A ALA 5 n 5 ALA 5 A SER 6 n 6 SER 6 A LYS 7 n 7 LYS 7 A ALA 8 n 8 ALA 8 A PRO 9 n 9 PRO 9 A THR 10 n 10 THR 10 A SER 11 n 11 SER 11 A PHE 12 n 12 PHE 12 A ALA 13 n 13 ALA 13 A GLU 14 n 14 GLU 14 A TYR 15 n 15 TYR 15 A TRP 16 n 16 TRP 16 A ASN 17 n 17 ASN 17 A LEU 18 n 18 LEU 18 A LEU 19 n 19 LEU 19 A SER 20 n 20 SER 20 A ALA 21 n 21 ALA 21 A GLY 22 n 22 GLY 22 A GLY 23 n 23 GLY 23 A VAL 24 n 24 VAL 24 A CYS 25 n 25 CYS 25 A PRO 26 n 26 PRO 26 A LYS 27 n 27 LYS 27 A ILE 28 n 28 ILE 28 A LEU 29 n 29 LEU 29 A GLN 30 n 30 GLN 30 A ARG 31 n 31 ARG 31 A CYS 32 n 32 CYS 32 A ARG 33 n 33 ARG 33 A ARG 34 n 34 ARG 34 A ASP 35 n 35 ASP 35 A SER 36 n 36 SER 36 A ASP 37 n 37 ASP 37 A CYS 38 n 38 CYS 38 A PRO 39 n 39 PRO 39 A GLY 40 n 40 GLY 40 A ALA 41 n 41 ALA 41 A CYS 42 n 42 CYS 42 A ILE 43 n 43 ILE 43 A CYS 44 n 44 CYS 44 A ARG 45 n 45 ARG 45 A GLY 46 n 46 GLY 46 A ASN 47 n 47 ASN 47 A GLY 48 n 48 GLY 48 A TYR 49 n 49 TYR 49 A CYS 50 n 50 CYS 50 A GLY 51 n 51 GLY 51 A n 1 62 B n 2 63 B n 3 64 B n 4 65 B n 5 66 B n 6 67 B n 7 68 B n 8 69 B n 9 70 B n 10 71 B n 11 72 B n 12 73 B n 13 74 B n 14 75 B n 15 76 B n 16 77 B n 17 78 B n 18 79 B n 19 80 B n 20 81 B n 21 82 B n 22 83 B n 23 84 B n 24 85 B n 25 86 B n 26 87 B n 27 88 B n 28 89 B n 29 90 B n 30 91 B LEU 92 n 31 LEU 92 B VAL 93 n 32 VAL 93 B ARG 94 n 33 ARG 94 B PRO 95 n 34 PRO 95 B LYS 96 n 35 LYS 96 B PRO 97 n 36 PRO 97 B LEU 98 n 37 LEU 98 B LEU 99 n 38 LEU 99 B LEU 100 n 39 LEU 100 B LYS 101 n 40 LYS 101 B LEU 102 n 41 LEU 102 B LEU 103 n 42 LEU 103 B LYS 104 n 43 LYS 104 B SER 105 n 44 SER 105 B VAL 106 n 45 VAL 106 B GLY 107 n 46 GLY 107 B ALA 108 n 47 ALA 108 B GLN 109 n 48 GLN 109 B LYS 110 n 49 LYS 110 B ASP 111 n 50 ASP 111 B THR 112 n 51 THR 112 B TYR 113 n 52 TYR 113 B THR 114 n 53 THR 114 B MET 115 n 54 MET 115 B LYS 116 n 55 LYS 116 B GLU 117 n 56 GLU 117 B VAL 118 n 57 VAL 118 B LEU 119 n 58 LEU 119 B PHE 120 n 59 PHE 120 B TYR 121 n 60 TYR 121 B LEU 122 n 61 LEU 122 B GLY 123 n 62 GLY 123 B GLN 124 n 63 GLN 124 B TYR 125 n 64 TYR 125 B ILE 126 n 65 ILE 126 B MET 127 n 66 MET 127 B THR 128 n 67 THR 128 B LYS 129 n 68 LYS 129 B ARG 130 n 69 ARG 130 B LEU 131 n 70 LEU 131 B TYR 132 n 71 TYR 132 B ASP 133 n 72 ASP 133 B GLU 134 n 73 GLU 134 B LYS 135 n 74 LYS 135 B GLN 136 n 75 GLN 136 B GLN 137 n 76 GLN 137 B HIS 138 n 77 HIS 138 B ILE 139 n 78 ILE 139 B VAL 140 n 79 VAL 140 B TYR 141 n 80 TYR 141 B CYS 142 n 81 CYS 142 B SER 143 n 82 SER 143 B ASN 144 n 83 ASN 144 B ASP 145 n 84 ASP 145 B LEU 146 n 85 LEU 146 B LEU 147 n 86 LEU 147 B GLY 148 n 87 GLY 148 B ASP 149 n 88 ASP 149 B LEU 150 n 89 LEU 150 B PHE 151 n 90 PHE 151 B GLY 152 n 91 GLY 152 B VAL 153 n 92 VAL 153 B PRO 154 n 93 PRO 154 B SER 155 n 94 SER 155 B PHE 156 n 95 PHE 156 B SER 157 n 96 SER 157 B VAL 158 n 97 VAL 158 B LYS 159 n 98 LYS 159 B GLU 160 n 99 GLU 160 B HIS 161 n 100 HIS 161 B ARG 162 n 101 ARG 162 B LYS 163 n 102 LYS 163 B ILE 164 n 103 ILE 164 B TYR 165 n 104 TYR 165 B THR 166 n 105 THR 166 B MET 167 n 106 MET 167 B ILE 168 n 107 ILE 168 B TYR 169 n 108 TYR 169 B ARG 170 n 109 ARG 170 B ASN 171 n 110 ASN 171 B LEU 172 n 111 LEU 172 B VAL 173 n 112 VAL 173 B VAL 174 n 113 VAL 174 B n 114 175 B n 115 176 B n 116 177 B n 117 178 B n 118 179 B n 119 180 B n 120 181 B n 121 182 B n 122 183 B n 123 184 B n 124 185 B n 125 186 B n 126 187 B n 127 188 B n 128 189 B n 129 190 B author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 B N VAL 140 B N VAL 79 B O PHE 156 B O PHE 95 1 B GLY 62 B GLY 1 1 Y 1 B SER 63 B SER 2 1 Y 1 B SER 64 B SER 3 1 Y 1 B HIS 65 B HIS 4 1 Y 1 B HIS 66 B HIS 5 1 Y 1 B HIS 67 B HIS 6 1 Y 1 B HIS 68 B HIS 7 1 Y 1 B HIS 69 B HIS 8 1 Y 1 B HIS 70 B HIS 9 1 Y 1 B SER 71 B SER 10 1 Y 1 B SER 72 B SER 11 1 Y 1 B GLY 73 B GLY 12 1 Y 1 B LEU 74 B LEU 13 1 Y 1 B VAL 75 B VAL 14 1 Y 1 B PRO 76 B PRO 15 1 Y 1 B ARG 77 B ARG 16 1 Y 1 B GLY 78 B GLY 17 1 Y 1 B SER 79 B SER 18 1 Y 1 B HIS 80 B HIS 19 1 Y 1 B MET 81 B MET 20 1 Y 1 B SER 82 B SER 21 1 Y 1 B GLN 83 B GLN 22 1 Y 1 B ILE 84 B ILE 23 1 Y 1 B PRO 85 B PRO 24 1 Y 1 B ALA 86 B ALA 25 1 Y 1 B SER 87 B SER 26 1 Y 1 B GLU 88 B GLU 27 1 Y 1 B GLN 89 B GLN 28 1 Y 1 B GLU 90 B GLU 29 1 Y 1 B THR 91 B THR 30 1 Y 1 B VAL 175 B VAL 114 1 Y 1 B ASN 176 B ASN 115 1 Y 1 B GLN 177 B GLN 116 1 Y 1 B GLN 178 B GLN 117 1 Y 1 B GLU 179 B GLU 118 1 Y 1 B SER 180 B SER 119 1 Y 1 B SER 181 B SER 120 1 Y 1 B ASP 182 B ASP 121 1 Y 1 B SER 183 B SER 122 1 Y 1 B GLY 184 B GLY 123 1 Y 1 B THR 185 B THR 124 1 Y 1 B SER 186 B SER 125 1 Y 1 B VAL 187 B VAL 126 1 Y 1 B SER 188 B SER 127 1 Y 1 B GLU 189 B GLU 128 1 Y 1 B ASN 190 B ASN 129 1 Y 2 B GLY 62 B GLY 1 1 Y 2 B SER 63 B SER 2 1 Y 2 B SER 64 B SER 3 1 Y 2 B HIS 65 B HIS 4 1 Y 2 B HIS 66 B HIS 5 1 Y 2 B HIS 67 B HIS 6 1 Y 2 B HIS 68 B HIS 7 1 Y 2 B HIS 69 B HIS 8 1 Y 2 B HIS 70 B HIS 9 1 Y 2 B SER 71 B SER 10 1 Y 2 B SER 72 B SER 11 1 Y 2 B GLY 73 B GLY 12 1 Y 2 B LEU 74 B LEU 13 1 Y 2 B VAL 75 B VAL 14 1 Y 2 B PRO 76 B PRO 15 1 Y 2 B ARG 77 B ARG 16 1 Y 2 B GLY 78 B GLY 17 1 Y 2 B SER 79 B SER 18 1 Y 2 B HIS 80 B HIS 19 1 Y 2 B MET 81 B MET 20 1 Y 2 B SER 82 B SER 21 1 Y 2 B GLN 83 B GLN 22 1 Y 2 B ILE 84 B ILE 23 1 Y 2 B PRO 85 B PRO 24 1 Y 2 B ALA 86 B ALA 25 1 Y 2 B SER 87 B SER 26 1 Y 2 B GLU 88 B GLU 27 1 Y 2 B GLN 89 B GLN 28 1 Y 2 B GLU 90 B GLU 29 1 Y 2 B THR 91 B THR 30 1 Y 2 B VAL 175 B VAL 114 1 Y 2 B ASN 176 B ASN 115 1 Y 2 B GLN 177 B GLN 116 1 Y 2 B GLN 178 B GLN 117 1 Y 2 B GLU 179 B GLU 118 1 Y 2 B SER 180 B SER 119 1 Y 2 B SER 181 B SER 120 1 Y 2 B ASP 182 B ASP 121 1 Y 2 B SER 183 B SER 122 1 Y 2 B GLY 184 B GLY 123 1 Y 2 B THR 185 B THR 124 1 Y 2 B SER 186 B SER 125 1 Y 2 B VAL 187 B VAL 126 1 Y 2 B SER 188 B SER 127 1 Y 2 B GLU 189 B GLU 128 1 Y 2 B ASN 190 B ASN 129 1 Y 3 B GLY 62 B GLY 1 1 Y 3 B SER 63 B SER 2 1 Y 3 B SER 64 B SER 3 1 Y 3 B HIS 65 B HIS 4 1 Y 3 B HIS 66 B HIS 5 1 Y 3 B HIS 67 B HIS 6 1 Y 3 B HIS 68 B HIS 7 1 Y 3 B HIS 69 B HIS 8 1 Y 3 B HIS 70 B HIS 9 1 Y 3 B SER 71 B SER 10 1 Y 3 B SER 72 B SER 11 1 Y 3 B GLY 73 B GLY 12 1 Y 3 B LEU 74 B LEU 13 1 Y 3 B VAL 75 B VAL 14 1 Y 3 B PRO 76 B PRO 15 1 Y 3 B ARG 77 B ARG 16 1 Y 3 B GLY 78 B GLY 17 1 Y 3 B SER 79 B SER 18 1 Y 3 B HIS 80 B HIS 19 1 Y 3 B MET 81 B MET 20 1 Y 3 B SER 82 B SER 21 1 Y 3 B GLN 83 B GLN 22 1 Y 3 B ILE 84 B ILE 23 1 Y 3 B PRO 85 B PRO 24 1 Y 3 B ALA 86 B ALA 25 1 Y 3 B SER 87 B SER 26 1 Y 3 B GLU 88 B GLU 27 1 Y 3 B GLN 89 B GLN 28 1 Y 3 B GLU 90 B GLU 29 1 Y 3 B THR 91 B THR 30 1 Y 3 B VAL 175 B VAL 114 1 Y 3 B ASN 176 B ASN 115 1 Y 3 B GLN 177 B GLN 116 1 Y 3 B GLN 178 B GLN 117 1 Y 3 B GLU 179 B GLU 118 1 Y 3 B SER 180 B SER 119 1 Y 3 B SER 181 B SER 120 1 Y 3 B ASP 182 B ASP 121 1 Y 3 B SER 183 B SER 122 1 Y 3 B GLY 184 B GLY 123 1 Y 3 B THR 185 B THR 124 1 Y 3 B SER 186 B SER 125 1 Y 3 B VAL 187 B VAL 126 1 Y 3 B SER 188 B SER 127 1 Y 3 B GLU 189 B GLU 128 1 Y 3 B ASN 190 B ASN 129 1 Y 4 B GLY 62 B GLY 1 1 Y 4 B SER 63 B SER 2 1 Y 4 B SER 64 B SER 3 1 Y 4 B HIS 65 B HIS 4 1 Y 4 B HIS 66 B HIS 5 1 Y 4 B HIS 67 B HIS 6 1 Y 4 B HIS 68 B HIS 7 1 Y 4 B HIS 69 B HIS 8 1 Y 4 B HIS 70 B HIS 9 1 Y 4 B SER 71 B SER 10 1 Y 4 B SER 72 B SER 11 1 Y 4 B GLY 73 B GLY 12 1 Y 4 B LEU 74 B LEU 13 1 Y 4 B VAL 75 B VAL 14 1 Y 4 B PRO 76 B PRO 15 1 Y 4 B ARG 77 B ARG 16 1 Y 4 B GLY 78 B GLY 17 1 Y 4 B SER 79 B SER 18 1 Y 4 B HIS 80 B HIS 19 1 Y 4 B MET 81 B MET 20 1 Y 4 B SER 82 B SER 21 1 Y 4 B GLN 83 B GLN 22 1 Y 4 B ILE 84 B ILE 23 1 Y 4 B PRO 85 B PRO 24 1 Y 4 B ALA 86 B ALA 25 1 Y 4 B SER 87 B SER 26 1 Y 4 B GLU 88 B GLU 27 1 Y 4 B GLN 89 B GLN 28 1 Y 4 B GLU 90 B GLU 29 1 Y 4 B THR 91 B THR 30 1 Y 4 B VAL 175 B VAL 114 1 Y 4 B ASN 176 B ASN 115 1 Y 4 B GLN 177 B GLN 116 1 Y 4 B GLN 178 B GLN 117 1 Y 4 B GLU 179 B GLU 118 1 Y 4 B SER 180 B SER 119 1 Y 4 B SER 181 B SER 120 1 Y 4 B ASP 182 B ASP 121 1 Y 4 B SER 183 B SER 122 1 Y 4 B GLY 184 B GLY 123 1 Y 4 B THR 185 B THR 124 1 Y 4 B SER 186 B SER 125 1 Y 4 B VAL 187 B VAL 126 1 Y 4 B SER 188 B SER 127 1 Y 4 B GLU 189 B GLU 128 1 Y 4 B ASN 190 B ASN 129 1 Y 5 B GLY 62 B GLY 1 1 Y 5 B SER 63 B SER 2 1 Y 5 B SER 64 B SER 3 1 Y 5 B HIS 65 B HIS 4 1 Y 5 B HIS 66 B HIS 5 1 Y 5 B HIS 67 B HIS 6 1 Y 5 B HIS 68 B HIS 7 1 Y 5 B HIS 69 B HIS 8 1 Y 5 B HIS 70 B HIS 9 1 Y 5 B SER 71 B SER 10 1 Y 5 B SER 72 B SER 11 1 Y 5 B GLY 73 B GLY 12 1 Y 5 B LEU 74 B LEU 13 1 Y 5 B VAL 75 B VAL 14 1 Y 5 B PRO 76 B PRO 15 1 Y 5 B ARG 77 B ARG 16 1 Y 5 B GLY 78 B GLY 17 1 Y 5 B SER 79 B SER 18 1 Y 5 B HIS 80 B HIS 19 1 Y 5 B MET 81 B MET 20 1 Y 5 B SER 82 B SER 21 1 Y 5 B GLN 83 B GLN 22 1 Y 5 B ILE 84 B ILE 23 1 Y 5 B PRO 85 B PRO 24 1 Y 5 B ALA 86 B ALA 25 1 Y 5 B SER 87 B SER 26 1 Y 5 B GLU 88 B GLU 27 1 Y 5 B GLN 89 B GLN 28 1 Y 5 B GLU 90 B GLU 29 1 Y 5 B THR 91 B THR 30 1 Y 5 B VAL 175 B VAL 114 1 Y 5 B ASN 176 B ASN 115 1 Y 5 B GLN 177 B GLN 116 1 Y 5 B GLN 178 B GLN 117 1 Y 5 B GLU 179 B GLU 118 1 Y 5 B SER 180 B SER 119 1 Y 5 B SER 181 B SER 120 1 Y 5 B ASP 182 B ASP 121 1 Y 5 B SER 183 B SER 122 1 Y 5 B GLY 184 B GLY 123 1 Y 5 B THR 185 B THR 124 1 Y 5 B SER 186 B SER 125 1 Y 5 B VAL 187 B VAL 126 1 Y 5 B SER 188 B SER 127 1 Y 5 B GLU 189 B GLU 128 1 Y 5 B ASN 190 B ASN 129 1 Y 6 B GLY 62 B GLY 1 1 Y 6 B SER 63 B SER 2 1 Y 6 B SER 64 B SER 3 1 Y 6 B HIS 65 B HIS 4 1 Y 6 B HIS 66 B HIS 5 1 Y 6 B HIS 67 B HIS 6 1 Y 6 B HIS 68 B HIS 7 1 Y 6 B HIS 69 B HIS 8 1 Y 6 B HIS 70 B HIS 9 1 Y 6 B SER 71 B SER 10 1 Y 6 B SER 72 B SER 11 1 Y 6 B GLY 73 B GLY 12 1 Y 6 B LEU 74 B LEU 13 1 Y 6 B VAL 75 B VAL 14 1 Y 6 B PRO 76 B PRO 15 1 Y 6 B ARG 77 B ARG 16 1 Y 6 B GLY 78 B GLY 17 1 Y 6 B SER 79 B SER 18 1 Y 6 B HIS 80 B HIS 19 1 Y 6 B MET 81 B MET 20 1 Y 6 B SER 82 B SER 21 1 Y 6 B GLN 83 B GLN 22 1 Y 6 B ILE 84 B ILE 23 1 Y 6 B PRO 85 B PRO 24 1 Y 6 B ALA 86 B ALA 25 1 Y 6 B SER 87 B SER 26 1 Y 6 B GLU 88 B GLU 27 1 Y 6 B GLN 89 B GLN 28 1 Y 6 B GLU 90 B GLU 29 1 Y 6 B THR 91 B THR 30 1 Y 6 B VAL 175 B VAL 114 1 Y 6 B ASN 176 B ASN 115 1 Y 6 B GLN 177 B GLN 116 1 Y 6 B GLN 178 B GLN 117 1 Y 6 B GLU 179 B GLU 118 1 Y 6 B SER 180 B SER 119 1 Y 6 B SER 181 B SER 120 1 Y 6 B ASP 182 B ASP 121 1 Y 6 B SER 183 B SER 122 1 Y 6 B GLY 184 B GLY 123 1 Y 6 B THR 185 B THR 124 1 Y 6 B SER 186 B SER 125 1 Y 6 B VAL 187 B VAL 126 1 Y 6 B SER 188 B SER 127 1 Y 6 B GLU 189 B GLU 128 1 Y 6 B ASN 190 B ASN 129 1 Y 7 B GLY 62 B GLY 1 1 Y 7 B SER 63 B SER 2 1 Y 7 B SER 64 B SER 3 1 Y 7 B HIS 65 B HIS 4 1 Y 7 B HIS 66 B HIS 5 1 Y 7 B HIS 67 B HIS 6 1 Y 7 B HIS 68 B HIS 7 1 Y 7 B HIS 69 B HIS 8 1 Y 7 B HIS 70 B HIS 9 1 Y 7 B SER 71 B SER 10 1 Y 7 B SER 72 B SER 11 1 Y 7 B GLY 73 B GLY 12 1 Y 7 B LEU 74 B LEU 13 1 Y 7 B VAL 75 B VAL 14 1 Y 7 B PRO 76 B PRO 15 1 Y 7 B ARG 77 B ARG 16 1 Y 7 B GLY 78 B GLY 17 1 Y 7 B SER 79 B SER 18 1 Y 7 B HIS 80 B HIS 19 1 Y 7 B MET 81 B MET 20 1 Y 7 B SER 82 B SER 21 1 Y 7 B GLN 83 B GLN 22 1 Y 7 B ILE 84 B ILE 23 1 Y 7 B PRO 85 B PRO 24 1 Y 7 B ALA 86 B ALA 25 1 Y 7 B SER 87 B SER 26 1 Y 7 B GLU 88 B GLU 27 1 Y 7 B GLN 89 B GLN 28 1 Y 7 B GLU 90 B GLU 29 1 Y 7 B THR 91 B THR 30 1 Y 7 B VAL 175 B VAL 114 1 Y 7 B ASN 176 B ASN 115 1 Y 7 B GLN 177 B GLN 116 1 Y 7 B GLN 178 B GLN 117 1 Y 7 B GLU 179 B GLU 118 1 Y 7 B SER 180 B SER 119 1 Y 7 B SER 181 B SER 120 1 Y 7 B ASP 182 B ASP 121 1 Y 7 B SER 183 B SER 122 1 Y 7 B GLY 184 B GLY 123 1 Y 7 B THR 185 B THR 124 1 Y 7 B SER 186 B SER 125 1 Y 7 B VAL 187 B VAL 126 1 Y 7 B SER 188 B SER 127 1 Y 7 B GLU 189 B GLU 128 1 Y 7 B ASN 190 B ASN 129 1 Y 8 B GLY 62 B GLY 1 1 Y 8 B SER 63 B SER 2 1 Y 8 B SER 64 B SER 3 1 Y 8 B HIS 65 B HIS 4 1 Y 8 B HIS 66 B HIS 5 1 Y 8 B HIS 67 B HIS 6 1 Y 8 B HIS 68 B HIS 7 1 Y 8 B HIS 69 B HIS 8 1 Y 8 B HIS 70 B HIS 9 1 Y 8 B SER 71 B SER 10 1 Y 8 B SER 72 B SER 11 1 Y 8 B GLY 73 B GLY 12 1 Y 8 B LEU 74 B LEU 13 1 Y 8 B VAL 75 B VAL 14 1 Y 8 B PRO 76 B PRO 15 1 Y 8 B ARG 77 B ARG 16 1 Y 8 B GLY 78 B GLY 17 1 Y 8 B SER 79 B SER 18 1 Y 8 B HIS 80 B HIS 19 1 Y 8 B MET 81 B MET 20 1 Y 8 B SER 82 B SER 21 1 Y 8 B GLN 83 B GLN 22 1 Y 8 B ILE 84 B ILE 23 1 Y 8 B PRO 85 B PRO 24 1 Y 8 B ALA 86 B ALA 25 1 Y 8 B SER 87 B SER 26 1 Y 8 B GLU 88 B GLU 27 1 Y 8 B GLN 89 B GLN 28 1 Y 8 B GLU 90 B GLU 29 1 Y 8 B THR 91 B THR 30 1 Y 8 B VAL 175 B VAL 114 1 Y 8 B ASN 176 B ASN 115 1 Y 8 B GLN 177 B GLN 116 1 Y 8 B GLN 178 B GLN 117 1 Y 8 B GLU 179 B GLU 118 1 Y 8 B SER 180 B SER 119 1 Y 8 B SER 181 B SER 120 1 Y 8 B ASP 182 B ASP 121 1 Y 8 B SER 183 B SER 122 1 Y 8 B GLY 184 B GLY 123 1 Y 8 B THR 185 B THR 124 1 Y 8 B SER 186 B SER 125 1 Y 8 B VAL 187 B VAL 126 1 Y 8 B SER 188 B SER 127 1 Y 8 B GLU 189 B GLU 128 1 Y 8 B ASN 190 B ASN 129 1 Y 9 B GLY 62 B GLY 1 1 Y 9 B SER 63 B SER 2 1 Y 9 B SER 64 B SER 3 1 Y 9 B HIS 65 B HIS 4 1 Y 9 B HIS 66 B HIS 5 1 Y 9 B HIS 67 B HIS 6 1 Y 9 B HIS 68 B HIS 7 1 Y 9 B HIS 69 B HIS 8 1 Y 9 B HIS 70 B HIS 9 1 Y 9 B SER 71 B SER 10 1 Y 9 B SER 72 B SER 11 1 Y 9 B GLY 73 B GLY 12 1 Y 9 B LEU 74 B LEU 13 1 Y 9 B VAL 75 B VAL 14 1 Y 9 B PRO 76 B PRO 15 1 Y 9 B ARG 77 B ARG 16 1 Y 9 B GLY 78 B GLY 17 1 Y 9 B SER 79 B SER 18 1 Y 9 B HIS 80 B HIS 19 1 Y 9 B MET 81 B MET 20 1 Y 9 B SER 82 B SER 21 1 Y 9 B GLN 83 B GLN 22 1 Y 9 B ILE 84 B ILE 23 1 Y 9 B PRO 85 B PRO 24 1 Y 9 B ALA 86 B ALA 25 1 Y 9 B SER 87 B SER 26 1 Y 9 B GLU 88 B GLU 27 1 Y 9 B GLN 89 B GLN 28 1 Y 9 B GLU 90 B GLU 29 1 Y 9 B THR 91 B THR 30 1 Y 9 B VAL 175 B VAL 114 1 Y 9 B ASN 176 B ASN 115 1 Y 9 B GLN 177 B GLN 116 1 Y 9 B GLN 178 B GLN 117 1 Y 9 B GLU 179 B GLU 118 1 Y 9 B SER 180 B SER 119 1 Y 9 B SER 181 B SER 120 1 Y 9 B ASP 182 B ASP 121 1 Y 9 B SER 183 B SER 122 1 Y 9 B GLY 184 B GLY 123 1 Y 9 B THR 185 B THR 124 1 Y 9 B SER 186 B SER 125 1 Y 9 B VAL 187 B VAL 126 1 Y 9 B SER 188 B SER 127 1 Y 9 B GLU 189 B GLU 128 1 Y 9 B ASN 190 B ASN 129 1 Y 10 B GLY 62 B GLY 1 1 Y 10 B SER 63 B SER 2 1 Y 10 B SER 64 B SER 3 1 Y 10 B HIS 65 B HIS 4 1 Y 10 B HIS 66 B HIS 5 1 Y 10 B HIS 67 B HIS 6 1 Y 10 B HIS 68 B HIS 7 1 Y 10 B HIS 69 B HIS 8 1 Y 10 B HIS 70 B HIS 9 1 Y 10 B SER 71 B SER 10 1 Y 10 B SER 72 B SER 11 1 Y 10 B GLY 73 B GLY 12 1 Y 10 B LEU 74 B LEU 13 1 Y 10 B VAL 75 B VAL 14 1 Y 10 B PRO 76 B PRO 15 1 Y 10 B ARG 77 B ARG 16 1 Y 10 B GLY 78 B GLY 17 1 Y 10 B SER 79 B SER 18 1 Y 10 B HIS 80 B HIS 19 1 Y 10 B MET 81 B MET 20 1 Y 10 B SER 82 B SER 21 1 Y 10 B GLN 83 B GLN 22 1 Y 10 B ILE 84 B ILE 23 1 Y 10 B PRO 85 B PRO 24 1 Y 10 B ALA 86 B ALA 25 1 Y 10 B SER 87 B SER 26 1 Y 10 B GLU 88 B GLU 27 1 Y 10 B GLN 89 B GLN 28 1 Y 10 B GLU 90 B GLU 29 1 Y 10 B THR 91 B THR 30 1 Y 10 B VAL 175 B VAL 114 1 Y 10 B ASN 176 B ASN 115 1 Y 10 B GLN 177 B GLN 116 1 Y 10 B GLN 178 B GLN 117 1 Y 10 B GLU 179 B GLU 118 1 Y 10 B SER 180 B SER 119 1 Y 10 B SER 181 B SER 120 1 Y 10 B ASP 182 B ASP 121 1 Y 10 B SER 183 B SER 122 1 Y 10 B GLY 184 B GLY 123 1 Y 10 B THR 185 B THR 124 1 Y 10 B SER 186 B SER 125 1 Y 10 B VAL 187 B VAL 126 1 Y 10 B SER 188 B SER 127 1 Y 10 B GLU 189 B GLU 128 1 Y 10 B ASN 190 B ASN 129 1 Y 1 B B OD2 HZ1 ASP LYS 133 135 1.50 1 A A N O SER GLY 1 51 2.14 2 B B HZ2 OD1 LYS ASP 110 111 1.50 2 A B OD2 HZ3 ASP LYS 35 116 1.53 2 B B OE2 HH GLU TYR 117 121 1.59 2 A A N O SER GLY 1 51 2.12 4 A A N O SER GLY 1 51 2.14 5 B B OE1 HZ2 GLU LYS 134 135 1.54 5 A B OD2 HZ1 ASP LYS 35 116 1.56 6 A B OD2 HZ3 ASP LYS 35 116 1.52 6 A A N O SER GLY 1 51 2.16 7 A A N O SER GLY 1 51 2.19 8 A B OD2 HZ1 ASP LYS 35 116 1.56 8 B B HZ1 O LYS THR 110 112 1.60 8 A A N O SER GLY 1 51 2.13 9 B B HZ3 OD2 LYS ASP 129 145 1.56 1 B ARG 130 0.108 SIDE CHAIN 3 A TYR 15 0.070 SIDE CHAIN 4 A TYR 15 0.070 SIDE CHAIN 4 B ARG 130 0.078 SIDE CHAIN 5 A TYR 15 0.069 SIDE CHAIN 5 A ARG 34 0.083 SIDE CHAIN 5 A ARG 45 0.138 SIDE CHAIN 6 A ARG 34 0.086 SIDE CHAIN 8 A ARG 34 0.082 SIDE CHAIN 8 B TYR 121 0.080 SIDE CHAIN 1 -3.50 0.50 120.30 116.80 A A A NE CZ NH2 ARG ARG ARG 33 33 33 N 2 -4.40 0.50 120.30 115.90 A A A NE CZ NH2 ARG ARG ARG 34 34 34 N 9 -3.85 0.50 120.30 116.45 A A A NE CZ NH2 ARG ARG ARG 33 33 33 N 10 -3.04 0.50 120.30 117.26 A A A NE CZ NH2 ARG ARG ARG 33 33 33 N 1 A ALA 8 175.16 87.22 1 A ALA 21 -58.34 94.59 1 A ALA 41 -161.30 25.59 1 B ARG 130 75.15 49.27 1 B GLN 136 -140.22 58.67 2 A ALA 8 -173.97 85.21 2 A ALA 41 -157.39 21.53 2 B ARG 130 74.91 59.04 2 B GLN 136 -111.84 63.30 3 A SER 6 -68.65 3.99 3 A ALA 8 -167.58 84.79 3 A ALA 21 -51.70 93.71 3 A ALA 41 -160.17 29.91 3 B ARG 130 71.98 53.67 4 A ALA 8 -178.60 87.32 4 A ALA 21 -48.86 93.32 4 A ALA 41 -151.69 6.65 4 B ARG 130 72.04 53.51 4 B GLN 136 -107.67 57.12 5 A ALA 8 -150.52 85.96 5 A ALA 21 -62.60 85.25 5 A LEU 29 -88.95 33.76 5 A CYS 32 -107.30 -161.29 5 A ARG 33 -150.45 -37.38 5 A ALA 41 -156.44 24.88 5 B ARG 130 77.34 50.92 5 B GLN 136 -108.81 63.36 5 B ASN 144 76.55 -27.11 6 A ALA 8 -175.78 89.17 6 A THR 10 -127.38 -60.40 6 A ALA 21 -69.72 89.16 6 A ALA 41 -161.35 40.61 6 B ARG 130 76.02 41.53 6 B GLN 136 -109.67 53.79 6 B ASN 144 76.24 -36.06 6 B GLU 160 -91.18 46.70 7 A ALA 8 -166.83 89.13 7 A ALA 21 -45.61 93.49 7 A LYS 27 79.82 78.77 7 B TYR 113 -128.40 -166.83 7 B ARG 130 72.29 49.30 7 B GLN 136 -115.34 56.59 7 B GLN 137 -60.92 5.46 7 B TYR 141 -105.90 78.60 7 B CYS 142 -86.34 37.81 7 B ASN 144 70.08 43.93 8 A ALA 8 174.53 89.60 8 A ALA 21 -64.87 92.60 8 A ALA 41 -168.23 24.82 8 B ASP 111 -54.44 -9.42 8 B GLN 136 -114.88 69.04 9 A ALA 8 -166.79 92.36 9 A ALA 21 -54.32 91.14 9 A LYS 27 70.32 51.88 9 A CYS 32 -103.91 -141.53 9 A ARG 33 -169.61 -39.67 9 A ALA 41 -150.03 16.06 9 B ARG 130 71.41 45.12 9 B GLN 136 -116.93 62.55 9 B ASN 144 72.97 -31.22 9 B GLU 160 -79.34 49.22 10 A ALA 8 -171.27 87.66 10 A ALA 21 -65.26 88.97 10 A ALA 41 -153.62 33.57 10 B ARG 130 71.82 49.84 10 B GLN 136 -96.13 59.65 Solution structure of Hdm2 with engineered cyclotide 1 N N 2 N N A SER 11 A SER 11 HELX_P A LEU 19 A LEU 19 1 1 9 B LYS 96 B LYS 35 HELX_P B LYS 104 B LYS 43 1 2 9 B THR 114 B THR 53 HELX_P B ARG 130 B ARG 69 1 3 17 B ASP 145 B ASP 84 HELX_P B GLY 152 B GLY 91 1 4 8 B GLU 160 B GLU 99 HELX_P B ARG 170 B ARG 109 1 5 11 disulf 2.034 A CYS 25 A SG CYS 25 1_555 A CYS 42 A SG CYS 42 1_555 disulf 2.029 A CYS 32 A SG CYS 32 1_555 A CYS 44 A SG CYS 44 1_555 disulf 2.020 A CYS 38 A SG CYS 38 1_555 A CYS 50 A SG CYS 50 1_555 covale 1.371 both A SER 1 A N SER 1 1_555 A GLY 51 A C GLY 51 1_555 PROTEIN BINDING/SIGNALING PROTEIN Hdm2 oncoprotein, MCoTI-I cyclotide, p53 tumor suppressor, PROTEIN BINDING-SIGNALING PROTEIN complex MDM2_HUMAN UNP 2 17 Q00987 SQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEH RKIYTMIYRNLVVVNQQESSDSGTSVSEN 2M86 PDB 1 2M86 17 125 2M86 82 190 Q00987 B 1 21 129 1 51 2M86 1 51 2M86 A 2 1 51 1 expression tag GLY 62 2M86 B Q00987 UNP 1 1 expression tag SER 63 2M86 B Q00987 UNP 2 1 expression tag SER 64 2M86 B Q00987 UNP 3 1 expression tag HIS 65 2M86 B Q00987 UNP 4 1 expression tag HIS 66 2M86 B Q00987 UNP 5 1 expression tag HIS 67 2M86 B Q00987 UNP 6 1 expression tag HIS 68 2M86 B Q00987 UNP 7 1 expression tag HIS 69 2M86 B Q00987 UNP 8 1 expression tag HIS 70 2M86 B Q00987 UNP 9 1 expression tag SER 71 2M86 B Q00987 UNP 10 1 expression tag SER 72 2M86 B Q00987 UNP 11 1 expression tag GLY 73 2M86 B Q00987 UNP 12 1 expression tag LEU 74 2M86 B Q00987 UNP 13 1 expression tag VAL 75 2M86 B Q00987 UNP 14 1 expression tag PRO 76 2M86 B Q00987 UNP 15 1 expression tag ARG 77 2M86 B Q00987 UNP 16 1 expression tag GLY 78 2M86 B Q00987 UNP 17 1 expression tag SER 79 2M86 B Q00987 UNP 18 1 expression tag HIS 80 2M86 B Q00987 UNP 19 1 expression tag MET 81 2M86 B Q00987 UNP 20 2 anti-parallel B ILE 139 B ILE 78 B TYR 141 B TYR 80 B SER 155 B SER 94 B SER 157 B SER 96