1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Majumder, S.
Ji, Y.
Millard, M.
Borra, R.
Bi, T.
Elnagar, A.Y.
Neamati, N.
Camarero, J.A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
J.Am.Chem.Soc.
JACSAT
0004
0002-7863
135
11623
11633
10.1021/ja405108p
23848581
In Vivo Activation of the p53 Tumor Suppressor Pathway by an Engineered Cyclotide.
2013
10.2210/pdb2m86/pdb
pdb_00002m86
5291.000
MCo-PMI
1
man
polymer
14706.715
E3 ubiquitin-protein ligase Mdm2
UNP residues 17-125
1
man
polymer
Double minute 2 protein, Hdm2, Oncoprotein Mdm2, p53-binding protein Mdm2
no
no
SGSGASKAPTSFAEYWNLLSAGGVCPKILQRCRRDSDCPGACICRGNGYCG
SGSGASKAPTSFAEYWNLLSAGGVCPKILQRCRRDSDCPGACICRGNGYCG
A
polypeptide(L)
no
no
GSSHHHHHHSSGLVPRGSHMSQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVY
CSNDLLGDLFGVPSFSVKEHRKIYTMIYRNLVVVNQQESSDSGTSVSEN
GSSHHHHHHSSGLVPRGSHMSQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVY
CSNDLLGDLFGVPSFSVKEHRKIYTMIYRNLVVVNQQESSDSGTSVSEN
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
32630
synthetic construct
562
Escherichia coli
plasmid
pTXB1
human
sample
MDM2
9606
Homo sapiens
562
Escherichia coli
plasmid
pet28a
database_2
pdbx_database_status
pdbx_nmr_spectrometer
struct_conn
struct_ref_seq_dif
repository
Initial release
Database references
Data collection
Database references
Derived calculations
Other
1
0
2013-07-31
1
1
2013-08-21
1
2
2023-06-14
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_nmr_data
_pdbx_nmr_spectrometer.model
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_ref_seq_dif.details
BMRB
Y
RCSB
2013-05-07
REL
REL
REL
REL
1040
342
187
155
320
0
0
125
125
structures with the lowest energy
1000
10
0.30
5
1.04
2D 1H-15N HSQC
2D 1H-15N HSQC
2D 1H-13C HSQC
3D 1H-15N NOESY
3D 1H-15N TOCSY
2D 1H-1H NOESY
3D 1H-13C NOESY aliphatic
3D 1H-15N NOESY
3D 1H-15N TOCSY
3D HNCA
3D HN(CO)CA
3D HNCACB
2D 1H-1H TOCSY
0.2
mM
0.2
mM
[U-99% 13C; U-99% 15N]
0.2
mM
[U-99% 15N]
0.2
mM
0.2
mM
0.2
mM
0.133
6.5
ambient
300
K
DGSA-distance geometry simulated annealing
1
lowest energy
0.2 mM MCo-PMI, 0.2 mM [U-99% 13C; U-99% 15N] Hdm2, 90% H2O/10% D2O
90% H2O/10% D2O
0.2 mM [U-99% 15N] Mo-PMI, 0.2 mM Hdm2, 90% H2O/10% D2O
90% H2O/10% D2O
0.2 mM MCo-PMI, 0.2 mM Hdm2, 90% H2O/10% D2O
90% H2O/10% D2O
Karplus, M.
refinement
CHRMM
36
Guntert, Mumenthaler and Wuthrich
structure solution
CYANA
2.1
700
Bruker
AVANCE
Bruker Avance
SER
1
n
1
SER
1
A
GLY
2
n
2
GLY
2
A
SER
3
n
3
SER
3
A
GLY
4
n
4
GLY
4
A
ALA
5
n
5
ALA
5
A
SER
6
n
6
SER
6
A
LYS
7
n
7
LYS
7
A
ALA
8
n
8
ALA
8
A
PRO
9
n
9
PRO
9
A
THR
10
n
10
THR
10
A
SER
11
n
11
SER
11
A
PHE
12
n
12
PHE
12
A
ALA
13
n
13
ALA
13
A
GLU
14
n
14
GLU
14
A
TYR
15
n
15
TYR
15
A
TRP
16
n
16
TRP
16
A
ASN
17
n
17
ASN
17
A
LEU
18
n
18
LEU
18
A
LEU
19
n
19
LEU
19
A
SER
20
n
20
SER
20
A
ALA
21
n
21
ALA
21
A
GLY
22
n
22
GLY
22
A
GLY
23
n
23
GLY
23
A
VAL
24
n
24
VAL
24
A
CYS
25
n
25
CYS
25
A
PRO
26
n
26
PRO
26
A
LYS
27
n
27
LYS
27
A
ILE
28
n
28
ILE
28
A
LEU
29
n
29
LEU
29
A
GLN
30
n
30
GLN
30
A
ARG
31
n
31
ARG
31
A
CYS
32
n
32
CYS
32
A
ARG
33
n
33
ARG
33
A
ARG
34
n
34
ARG
34
A
ASP
35
n
35
ASP
35
A
SER
36
n
36
SER
36
A
ASP
37
n
37
ASP
37
A
CYS
38
n
38
CYS
38
A
PRO
39
n
39
PRO
39
A
GLY
40
n
40
GLY
40
A
ALA
41
n
41
ALA
41
A
CYS
42
n
42
CYS
42
A
ILE
43
n
43
ILE
43
A
CYS
44
n
44
CYS
44
A
ARG
45
n
45
ARG
45
A
GLY
46
n
46
GLY
46
A
ASN
47
n
47
ASN
47
A
GLY
48
n
48
GLY
48
A
TYR
49
n
49
TYR
49
A
CYS
50
n
50
CYS
50
A
GLY
51
n
51
GLY
51
A
n
1
62
B
n
2
63
B
n
3
64
B
n
4
65
B
n
5
66
B
n
6
67
B
n
7
68
B
n
8
69
B
n
9
70
B
n
10
71
B
n
11
72
B
n
12
73
B
n
13
74
B
n
14
75
B
n
15
76
B
n
16
77
B
n
17
78
B
n
18
79
B
n
19
80
B
n
20
81
B
n
21
82
B
n
22
83
B
n
23
84
B
n
24
85
B
n
25
86
B
n
26
87
B
n
27
88
B
n
28
89
B
n
29
90
B
n
30
91
B
LEU
92
n
31
LEU
92
B
VAL
93
n
32
VAL
93
B
ARG
94
n
33
ARG
94
B
PRO
95
n
34
PRO
95
B
LYS
96
n
35
LYS
96
B
PRO
97
n
36
PRO
97
B
LEU
98
n
37
LEU
98
B
LEU
99
n
38
LEU
99
B
LEU
100
n
39
LEU
100
B
LYS
101
n
40
LYS
101
B
LEU
102
n
41
LEU
102
B
LEU
103
n
42
LEU
103
B
LYS
104
n
43
LYS
104
B
SER
105
n
44
SER
105
B
VAL
106
n
45
VAL
106
B
GLY
107
n
46
GLY
107
B
ALA
108
n
47
ALA
108
B
GLN
109
n
48
GLN
109
B
LYS
110
n
49
LYS
110
B
ASP
111
n
50
ASP
111
B
THR
112
n
51
THR
112
B
TYR
113
n
52
TYR
113
B
THR
114
n
53
THR
114
B
MET
115
n
54
MET
115
B
LYS
116
n
55
LYS
116
B
GLU
117
n
56
GLU
117
B
VAL
118
n
57
VAL
118
B
LEU
119
n
58
LEU
119
B
PHE
120
n
59
PHE
120
B
TYR
121
n
60
TYR
121
B
LEU
122
n
61
LEU
122
B
GLY
123
n
62
GLY
123
B
GLN
124
n
63
GLN
124
B
TYR
125
n
64
TYR
125
B
ILE
126
n
65
ILE
126
B
MET
127
n
66
MET
127
B
THR
128
n
67
THR
128
B
LYS
129
n
68
LYS
129
B
ARG
130
n
69
ARG
130
B
LEU
131
n
70
LEU
131
B
TYR
132
n
71
TYR
132
B
ASP
133
n
72
ASP
133
B
GLU
134
n
73
GLU
134
B
LYS
135
n
74
LYS
135
B
GLN
136
n
75
GLN
136
B
GLN
137
n
76
GLN
137
B
HIS
138
n
77
HIS
138
B
ILE
139
n
78
ILE
139
B
VAL
140
n
79
VAL
140
B
TYR
141
n
80
TYR
141
B
CYS
142
n
81
CYS
142
B
SER
143
n
82
SER
143
B
ASN
144
n
83
ASN
144
B
ASP
145
n
84
ASP
145
B
LEU
146
n
85
LEU
146
B
LEU
147
n
86
LEU
147
B
GLY
148
n
87
GLY
148
B
ASP
149
n
88
ASP
149
B
LEU
150
n
89
LEU
150
B
PHE
151
n
90
PHE
151
B
GLY
152
n
91
GLY
152
B
VAL
153
n
92
VAL
153
B
PRO
154
n
93
PRO
154
B
SER
155
n
94
SER
155
B
PHE
156
n
95
PHE
156
B
SER
157
n
96
SER
157
B
VAL
158
n
97
VAL
158
B
LYS
159
n
98
LYS
159
B
GLU
160
n
99
GLU
160
B
HIS
161
n
100
HIS
161
B
ARG
162
n
101
ARG
162
B
LYS
163
n
102
LYS
163
B
ILE
164
n
103
ILE
164
B
TYR
165
n
104
TYR
165
B
THR
166
n
105
THR
166
B
MET
167
n
106
MET
167
B
ILE
168
n
107
ILE
168
B
TYR
169
n
108
TYR
169
B
ARG
170
n
109
ARG
170
B
ASN
171
n
110
ASN
171
B
LEU
172
n
111
LEU
172
B
VAL
173
n
112
VAL
173
B
VAL
174
n
113
VAL
174
B
n
114
175
B
n
115
176
B
n
116
177
B
n
117
178
B
n
118
179
B
n
119
180
B
n
120
181
B
n
121
182
B
n
122
183
B
n
123
184
B
n
124
185
B
n
125
186
B
n
126
187
B
n
127
188
B
n
128
189
B
n
129
190
B
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
B
N
VAL
140
B
N
VAL
79
B
O
PHE
156
B
O
PHE
95
1
B
GLY
62
B
GLY
1
1
Y
1
B
SER
63
B
SER
2
1
Y
1
B
SER
64
B
SER
3
1
Y
1
B
HIS
65
B
HIS
4
1
Y
1
B
HIS
66
B
HIS
5
1
Y
1
B
HIS
67
B
HIS
6
1
Y
1
B
HIS
68
B
HIS
7
1
Y
1
B
HIS
69
B
HIS
8
1
Y
1
B
HIS
70
B
HIS
9
1
Y
1
B
SER
71
B
SER
10
1
Y
1
B
SER
72
B
SER
11
1
Y
1
B
GLY
73
B
GLY
12
1
Y
1
B
LEU
74
B
LEU
13
1
Y
1
B
VAL
75
B
VAL
14
1
Y
1
B
PRO
76
B
PRO
15
1
Y
1
B
ARG
77
B
ARG
16
1
Y
1
B
GLY
78
B
GLY
17
1
Y
1
B
SER
79
B
SER
18
1
Y
1
B
HIS
80
B
HIS
19
1
Y
1
B
MET
81
B
MET
20
1
Y
1
B
SER
82
B
SER
21
1
Y
1
B
GLN
83
B
GLN
22
1
Y
1
B
ILE
84
B
ILE
23
1
Y
1
B
PRO
85
B
PRO
24
1
Y
1
B
ALA
86
B
ALA
25
1
Y
1
B
SER
87
B
SER
26
1
Y
1
B
GLU
88
B
GLU
27
1
Y
1
B
GLN
89
B
GLN
28
1
Y
1
B
GLU
90
B
GLU
29
1
Y
1
B
THR
91
B
THR
30
1
Y
1
B
VAL
175
B
VAL
114
1
Y
1
B
ASN
176
B
ASN
115
1
Y
1
B
GLN
177
B
GLN
116
1
Y
1
B
GLN
178
B
GLN
117
1
Y
1
B
GLU
179
B
GLU
118
1
Y
1
B
SER
180
B
SER
119
1
Y
1
B
SER
181
B
SER
120
1
Y
1
B
ASP
182
B
ASP
121
1
Y
1
B
SER
183
B
SER
122
1
Y
1
B
GLY
184
B
GLY
123
1
Y
1
B
THR
185
B
THR
124
1
Y
1
B
SER
186
B
SER
125
1
Y
1
B
VAL
187
B
VAL
126
1
Y
1
B
SER
188
B
SER
127
1
Y
1
B
GLU
189
B
GLU
128
1
Y
1
B
ASN
190
B
ASN
129
1
Y
2
B
GLY
62
B
GLY
1
1
Y
2
B
SER
63
B
SER
2
1
Y
2
B
SER
64
B
SER
3
1
Y
2
B
HIS
65
B
HIS
4
1
Y
2
B
HIS
66
B
HIS
5
1
Y
2
B
HIS
67
B
HIS
6
1
Y
2
B
HIS
68
B
HIS
7
1
Y
2
B
HIS
69
B
HIS
8
1
Y
2
B
HIS
70
B
HIS
9
1
Y
2
B
SER
71
B
SER
10
1
Y
2
B
SER
72
B
SER
11
1
Y
2
B
GLY
73
B
GLY
12
1
Y
2
B
LEU
74
B
LEU
13
1
Y
2
B
VAL
75
B
VAL
14
1
Y
2
B
PRO
76
B
PRO
15
1
Y
2
B
ARG
77
B
ARG
16
1
Y
2
B
GLY
78
B
GLY
17
1
Y
2
B
SER
79
B
SER
18
1
Y
2
B
HIS
80
B
HIS
19
1
Y
2
B
MET
81
B
MET
20
1
Y
2
B
SER
82
B
SER
21
1
Y
2
B
GLN
83
B
GLN
22
1
Y
2
B
ILE
84
B
ILE
23
1
Y
2
B
PRO
85
B
PRO
24
1
Y
2
B
ALA
86
B
ALA
25
1
Y
2
B
SER
87
B
SER
26
1
Y
2
B
GLU
88
B
GLU
27
1
Y
2
B
GLN
89
B
GLN
28
1
Y
2
B
GLU
90
B
GLU
29
1
Y
2
B
THR
91
B
THR
30
1
Y
2
B
VAL
175
B
VAL
114
1
Y
2
B
ASN
176
B
ASN
115
1
Y
2
B
GLN
177
B
GLN
116
1
Y
2
B
GLN
178
B
GLN
117
1
Y
2
B
GLU
179
B
GLU
118
1
Y
2
B
SER
180
B
SER
119
1
Y
2
B
SER
181
B
SER
120
1
Y
2
B
ASP
182
B
ASP
121
1
Y
2
B
SER
183
B
SER
122
1
Y
2
B
GLY
184
B
GLY
123
1
Y
2
B
THR
185
B
THR
124
1
Y
2
B
SER
186
B
SER
125
1
Y
2
B
VAL
187
B
VAL
126
1
Y
2
B
SER
188
B
SER
127
1
Y
2
B
GLU
189
B
GLU
128
1
Y
2
B
ASN
190
B
ASN
129
1
Y
3
B
GLY
62
B
GLY
1
1
Y
3
B
SER
63
B
SER
2
1
Y
3
B
SER
64
B
SER
3
1
Y
3
B
HIS
65
B
HIS
4
1
Y
3
B
HIS
66
B
HIS
5
1
Y
3
B
HIS
67
B
HIS
6
1
Y
3
B
HIS
68
B
HIS
7
1
Y
3
B
HIS
69
B
HIS
8
1
Y
3
B
HIS
70
B
HIS
9
1
Y
3
B
SER
71
B
SER
10
1
Y
3
B
SER
72
B
SER
11
1
Y
3
B
GLY
73
B
GLY
12
1
Y
3
B
LEU
74
B
LEU
13
1
Y
3
B
VAL
75
B
VAL
14
1
Y
3
B
PRO
76
B
PRO
15
1
Y
3
B
ARG
77
B
ARG
16
1
Y
3
B
GLY
78
B
GLY
17
1
Y
3
B
SER
79
B
SER
18
1
Y
3
B
HIS
80
B
HIS
19
1
Y
3
B
MET
81
B
MET
20
1
Y
3
B
SER
82
B
SER
21
1
Y
3
B
GLN
83
B
GLN
22
1
Y
3
B
ILE
84
B
ILE
23
1
Y
3
B
PRO
85
B
PRO
24
1
Y
3
B
ALA
86
B
ALA
25
1
Y
3
B
SER
87
B
SER
26
1
Y
3
B
GLU
88
B
GLU
27
1
Y
3
B
GLN
89
B
GLN
28
1
Y
3
B
GLU
90
B
GLU
29
1
Y
3
B
THR
91
B
THR
30
1
Y
3
B
VAL
175
B
VAL
114
1
Y
3
B
ASN
176
B
ASN
115
1
Y
3
B
GLN
177
B
GLN
116
1
Y
3
B
GLN
178
B
GLN
117
1
Y
3
B
GLU
179
B
GLU
118
1
Y
3
B
SER
180
B
SER
119
1
Y
3
B
SER
181
B
SER
120
1
Y
3
B
ASP
182
B
ASP
121
1
Y
3
B
SER
183
B
SER
122
1
Y
3
B
GLY
184
B
GLY
123
1
Y
3
B
THR
185
B
THR
124
1
Y
3
B
SER
186
B
SER
125
1
Y
3
B
VAL
187
B
VAL
126
1
Y
3
B
SER
188
B
SER
127
1
Y
3
B
GLU
189
B
GLU
128
1
Y
3
B
ASN
190
B
ASN
129
1
Y
4
B
GLY
62
B
GLY
1
1
Y
4
B
SER
63
B
SER
2
1
Y
4
B
SER
64
B
SER
3
1
Y
4
B
HIS
65
B
HIS
4
1
Y
4
B
HIS
66
B
HIS
5
1
Y
4
B
HIS
67
B
HIS
6
1
Y
4
B
HIS
68
B
HIS
7
1
Y
4
B
HIS
69
B
HIS
8
1
Y
4
B
HIS
70
B
HIS
9
1
Y
4
B
SER
71
B
SER
10
1
Y
4
B
SER
72
B
SER
11
1
Y
4
B
GLY
73
B
GLY
12
1
Y
4
B
LEU
74
B
LEU
13
1
Y
4
B
VAL
75
B
VAL
14
1
Y
4
B
PRO
76
B
PRO
15
1
Y
4
B
ARG
77
B
ARG
16
1
Y
4
B
GLY
78
B
GLY
17
1
Y
4
B
SER
79
B
SER
18
1
Y
4
B
HIS
80
B
HIS
19
1
Y
4
B
MET
81
B
MET
20
1
Y
4
B
SER
82
B
SER
21
1
Y
4
B
GLN
83
B
GLN
22
1
Y
4
B
ILE
84
B
ILE
23
1
Y
4
B
PRO
85
B
PRO
24
1
Y
4
B
ALA
86
B
ALA
25
1
Y
4
B
SER
87
B
SER
26
1
Y
4
B
GLU
88
B
GLU
27
1
Y
4
B
GLN
89
B
GLN
28
1
Y
4
B
GLU
90
B
GLU
29
1
Y
4
B
THR
91
B
THR
30
1
Y
4
B
VAL
175
B
VAL
114
1
Y
4
B
ASN
176
B
ASN
115
1
Y
4
B
GLN
177
B
GLN
116
1
Y
4
B
GLN
178
B
GLN
117
1
Y
4
B
GLU
179
B
GLU
118
1
Y
4
B
SER
180
B
SER
119
1
Y
4
B
SER
181
B
SER
120
1
Y
4
B
ASP
182
B
ASP
121
1
Y
4
B
SER
183
B
SER
122
1
Y
4
B
GLY
184
B
GLY
123
1
Y
4
B
THR
185
B
THR
124
1
Y
4
B
SER
186
B
SER
125
1
Y
4
B
VAL
187
B
VAL
126
1
Y
4
B
SER
188
B
SER
127
1
Y
4
B
GLU
189
B
GLU
128
1
Y
4
B
ASN
190
B
ASN
129
1
Y
5
B
GLY
62
B
GLY
1
1
Y
5
B
SER
63
B
SER
2
1
Y
5
B
SER
64
B
SER
3
1
Y
5
B
HIS
65
B
HIS
4
1
Y
5
B
HIS
66
B
HIS
5
1
Y
5
B
HIS
67
B
HIS
6
1
Y
5
B
HIS
68
B
HIS
7
1
Y
5
B
HIS
69
B
HIS
8
1
Y
5
B
HIS
70
B
HIS
9
1
Y
5
B
SER
71
B
SER
10
1
Y
5
B
SER
72
B
SER
11
1
Y
5
B
GLY
73
B
GLY
12
1
Y
5
B
LEU
74
B
LEU
13
1
Y
5
B
VAL
75
B
VAL
14
1
Y
5
B
PRO
76
B
PRO
15
1
Y
5
B
ARG
77
B
ARG
16
1
Y
5
B
GLY
78
B
GLY
17
1
Y
5
B
SER
79
B
SER
18
1
Y
5
B
HIS
80
B
HIS
19
1
Y
5
B
MET
81
B
MET
20
1
Y
5
B
SER
82
B
SER
21
1
Y
5
B
GLN
83
B
GLN
22
1
Y
5
B
ILE
84
B
ILE
23
1
Y
5
B
PRO
85
B
PRO
24
1
Y
5
B
ALA
86
B
ALA
25
1
Y
5
B
SER
87
B
SER
26
1
Y
5
B
GLU
88
B
GLU
27
1
Y
5
B
GLN
89
B
GLN
28
1
Y
5
B
GLU
90
B
GLU
29
1
Y
5
B
THR
91
B
THR
30
1
Y
5
B
VAL
175
B
VAL
114
1
Y
5
B
ASN
176
B
ASN
115
1
Y
5
B
GLN
177
B
GLN
116
1
Y
5
B
GLN
178
B
GLN
117
1
Y
5
B
GLU
179
B
GLU
118
1
Y
5
B
SER
180
B
SER
119
1
Y
5
B
SER
181
B
SER
120
1
Y
5
B
ASP
182
B
ASP
121
1
Y
5
B
SER
183
B
SER
122
1
Y
5
B
GLY
184
B
GLY
123
1
Y
5
B
THR
185
B
THR
124
1
Y
5
B
SER
186
B
SER
125
1
Y
5
B
VAL
187
B
VAL
126
1
Y
5
B
SER
188
B
SER
127
1
Y
5
B
GLU
189
B
GLU
128
1
Y
5
B
ASN
190
B
ASN
129
1
Y
6
B
GLY
62
B
GLY
1
1
Y
6
B
SER
63
B
SER
2
1
Y
6
B
SER
64
B
SER
3
1
Y
6
B
HIS
65
B
HIS
4
1
Y
6
B
HIS
66
B
HIS
5
1
Y
6
B
HIS
67
B
HIS
6
1
Y
6
B
HIS
68
B
HIS
7
1
Y
6
B
HIS
69
B
HIS
8
1
Y
6
B
HIS
70
B
HIS
9
1
Y
6
B
SER
71
B
SER
10
1
Y
6
B
SER
72
B
SER
11
1
Y
6
B
GLY
73
B
GLY
12
1
Y
6
B
LEU
74
B
LEU
13
1
Y
6
B
VAL
75
B
VAL
14
1
Y
6
B
PRO
76
B
PRO
15
1
Y
6
B
ARG
77
B
ARG
16
1
Y
6
B
GLY
78
B
GLY
17
1
Y
6
B
SER
79
B
SER
18
1
Y
6
B
HIS
80
B
HIS
19
1
Y
6
B
MET
81
B
MET
20
1
Y
6
B
SER
82
B
SER
21
1
Y
6
B
GLN
83
B
GLN
22
1
Y
6
B
ILE
84
B
ILE
23
1
Y
6
B
PRO
85
B
PRO
24
1
Y
6
B
ALA
86
B
ALA
25
1
Y
6
B
SER
87
B
SER
26
1
Y
6
B
GLU
88
B
GLU
27
1
Y
6
B
GLN
89
B
GLN
28
1
Y
6
B
GLU
90
B
GLU
29
1
Y
6
B
THR
91
B
THR
30
1
Y
6
B
VAL
175
B
VAL
114
1
Y
6
B
ASN
176
B
ASN
115
1
Y
6
B
GLN
177
B
GLN
116
1
Y
6
B
GLN
178
B
GLN
117
1
Y
6
B
GLU
179
B
GLU
118
1
Y
6
B
SER
180
B
SER
119
1
Y
6
B
SER
181
B
SER
120
1
Y
6
B
ASP
182
B
ASP
121
1
Y
6
B
SER
183
B
SER
122
1
Y
6
B
GLY
184
B
GLY
123
1
Y
6
B
THR
185
B
THR
124
1
Y
6
B
SER
186
B
SER
125
1
Y
6
B
VAL
187
B
VAL
126
1
Y
6
B
SER
188
B
SER
127
1
Y
6
B
GLU
189
B
GLU
128
1
Y
6
B
ASN
190
B
ASN
129
1
Y
7
B
GLY
62
B
GLY
1
1
Y
7
B
SER
63
B
SER
2
1
Y
7
B
SER
64
B
SER
3
1
Y
7
B
HIS
65
B
HIS
4
1
Y
7
B
HIS
66
B
HIS
5
1
Y
7
B
HIS
67
B
HIS
6
1
Y
7
B
HIS
68
B
HIS
7
1
Y
7
B
HIS
69
B
HIS
8
1
Y
7
B
HIS
70
B
HIS
9
1
Y
7
B
SER
71
B
SER
10
1
Y
7
B
SER
72
B
SER
11
1
Y
7
B
GLY
73
B
GLY
12
1
Y
7
B
LEU
74
B
LEU
13
1
Y
7
B
VAL
75
B
VAL
14
1
Y
7
B
PRO
76
B
PRO
15
1
Y
7
B
ARG
77
B
ARG
16
1
Y
7
B
GLY
78
B
GLY
17
1
Y
7
B
SER
79
B
SER
18
1
Y
7
B
HIS
80
B
HIS
19
1
Y
7
B
MET
81
B
MET
20
1
Y
7
B
SER
82
B
SER
21
1
Y
7
B
GLN
83
B
GLN
22
1
Y
7
B
ILE
84
B
ILE
23
1
Y
7
B
PRO
85
B
PRO
24
1
Y
7
B
ALA
86
B
ALA
25
1
Y
7
B
SER
87
B
SER
26
1
Y
7
B
GLU
88
B
GLU
27
1
Y
7
B
GLN
89
B
GLN
28
1
Y
7
B
GLU
90
B
GLU
29
1
Y
7
B
THR
91
B
THR
30
1
Y
7
B
VAL
175
B
VAL
114
1
Y
7
B
ASN
176
B
ASN
115
1
Y
7
B
GLN
177
B
GLN
116
1
Y
7
B
GLN
178
B
GLN
117
1
Y
7
B
GLU
179
B
GLU
118
1
Y
7
B
SER
180
B
SER
119
1
Y
7
B
SER
181
B
SER
120
1
Y
7
B
ASP
182
B
ASP
121
1
Y
7
B
SER
183
B
SER
122
1
Y
7
B
GLY
184
B
GLY
123
1
Y
7
B
THR
185
B
THR
124
1
Y
7
B
SER
186
B
SER
125
1
Y
7
B
VAL
187
B
VAL
126
1
Y
7
B
SER
188
B
SER
127
1
Y
7
B
GLU
189
B
GLU
128
1
Y
7
B
ASN
190
B
ASN
129
1
Y
8
B
GLY
62
B
GLY
1
1
Y
8
B
SER
63
B
SER
2
1
Y
8
B
SER
64
B
SER
3
1
Y
8
B
HIS
65
B
HIS
4
1
Y
8
B
HIS
66
B
HIS
5
1
Y
8
B
HIS
67
B
HIS
6
1
Y
8
B
HIS
68
B
HIS
7
1
Y
8
B
HIS
69
B
HIS
8
1
Y
8
B
HIS
70
B
HIS
9
1
Y
8
B
SER
71
B
SER
10
1
Y
8
B
SER
72
B
SER
11
1
Y
8
B
GLY
73
B
GLY
12
1
Y
8
B
LEU
74
B
LEU
13
1
Y
8
B
VAL
75
B
VAL
14
1
Y
8
B
PRO
76
B
PRO
15
1
Y
8
B
ARG
77
B
ARG
16
1
Y
8
B
GLY
78
B
GLY
17
1
Y
8
B
SER
79
B
SER
18
1
Y
8
B
HIS
80
B
HIS
19
1
Y
8
B
MET
81
B
MET
20
1
Y
8
B
SER
82
B
SER
21
1
Y
8
B
GLN
83
B
GLN
22
1
Y
8
B
ILE
84
B
ILE
23
1
Y
8
B
PRO
85
B
PRO
24
1
Y
8
B
ALA
86
B
ALA
25
1
Y
8
B
SER
87
B
SER
26
1
Y
8
B
GLU
88
B
GLU
27
1
Y
8
B
GLN
89
B
GLN
28
1
Y
8
B
GLU
90
B
GLU
29
1
Y
8
B
THR
91
B
THR
30
1
Y
8
B
VAL
175
B
VAL
114
1
Y
8
B
ASN
176
B
ASN
115
1
Y
8
B
GLN
177
B
GLN
116
1
Y
8
B
GLN
178
B
GLN
117
1
Y
8
B
GLU
179
B
GLU
118
1
Y
8
B
SER
180
B
SER
119
1
Y
8
B
SER
181
B
SER
120
1
Y
8
B
ASP
182
B
ASP
121
1
Y
8
B
SER
183
B
SER
122
1
Y
8
B
GLY
184
B
GLY
123
1
Y
8
B
THR
185
B
THR
124
1
Y
8
B
SER
186
B
SER
125
1
Y
8
B
VAL
187
B
VAL
126
1
Y
8
B
SER
188
B
SER
127
1
Y
8
B
GLU
189
B
GLU
128
1
Y
8
B
ASN
190
B
ASN
129
1
Y
9
B
GLY
62
B
GLY
1
1
Y
9
B
SER
63
B
SER
2
1
Y
9
B
SER
64
B
SER
3
1
Y
9
B
HIS
65
B
HIS
4
1
Y
9
B
HIS
66
B
HIS
5
1
Y
9
B
HIS
67
B
HIS
6
1
Y
9
B
HIS
68
B
HIS
7
1
Y
9
B
HIS
69
B
HIS
8
1
Y
9
B
HIS
70
B
HIS
9
1
Y
9
B
SER
71
B
SER
10
1
Y
9
B
SER
72
B
SER
11
1
Y
9
B
GLY
73
B
GLY
12
1
Y
9
B
LEU
74
B
LEU
13
1
Y
9
B
VAL
75
B
VAL
14
1
Y
9
B
PRO
76
B
PRO
15
1
Y
9
B
ARG
77
B
ARG
16
1
Y
9
B
GLY
78
B
GLY
17
1
Y
9
B
SER
79
B
SER
18
1
Y
9
B
HIS
80
B
HIS
19
1
Y
9
B
MET
81
B
MET
20
1
Y
9
B
SER
82
B
SER
21
1
Y
9
B
GLN
83
B
GLN
22
1
Y
9
B
ILE
84
B
ILE
23
1
Y
9
B
PRO
85
B
PRO
24
1
Y
9
B
ALA
86
B
ALA
25
1
Y
9
B
SER
87
B
SER
26
1
Y
9
B
GLU
88
B
GLU
27
1
Y
9
B
GLN
89
B
GLN
28
1
Y
9
B
GLU
90
B
GLU
29
1
Y
9
B
THR
91
B
THR
30
1
Y
9
B
VAL
175
B
VAL
114
1
Y
9
B
ASN
176
B
ASN
115
1
Y
9
B
GLN
177
B
GLN
116
1
Y
9
B
GLN
178
B
GLN
117
1
Y
9
B
GLU
179
B
GLU
118
1
Y
9
B
SER
180
B
SER
119
1
Y
9
B
SER
181
B
SER
120
1
Y
9
B
ASP
182
B
ASP
121
1
Y
9
B
SER
183
B
SER
122
1
Y
9
B
GLY
184
B
GLY
123
1
Y
9
B
THR
185
B
THR
124
1
Y
9
B
SER
186
B
SER
125
1
Y
9
B
VAL
187
B
VAL
126
1
Y
9
B
SER
188
B
SER
127
1
Y
9
B
GLU
189
B
GLU
128
1
Y
9
B
ASN
190
B
ASN
129
1
Y
10
B
GLY
62
B
GLY
1
1
Y
10
B
SER
63
B
SER
2
1
Y
10
B
SER
64
B
SER
3
1
Y
10
B
HIS
65
B
HIS
4
1
Y
10
B
HIS
66
B
HIS
5
1
Y
10
B
HIS
67
B
HIS
6
1
Y
10
B
HIS
68
B
HIS
7
1
Y
10
B
HIS
69
B
HIS
8
1
Y
10
B
HIS
70
B
HIS
9
1
Y
10
B
SER
71
B
SER
10
1
Y
10
B
SER
72
B
SER
11
1
Y
10
B
GLY
73
B
GLY
12
1
Y
10
B
LEU
74
B
LEU
13
1
Y
10
B
VAL
75
B
VAL
14
1
Y
10
B
PRO
76
B
PRO
15
1
Y
10
B
ARG
77
B
ARG
16
1
Y
10
B
GLY
78
B
GLY
17
1
Y
10
B
SER
79
B
SER
18
1
Y
10
B
HIS
80
B
HIS
19
1
Y
10
B
MET
81
B
MET
20
1
Y
10
B
SER
82
B
SER
21
1
Y
10
B
GLN
83
B
GLN
22
1
Y
10
B
ILE
84
B
ILE
23
1
Y
10
B
PRO
85
B
PRO
24
1
Y
10
B
ALA
86
B
ALA
25
1
Y
10
B
SER
87
B
SER
26
1
Y
10
B
GLU
88
B
GLU
27
1
Y
10
B
GLN
89
B
GLN
28
1
Y
10
B
GLU
90
B
GLU
29
1
Y
10
B
THR
91
B
THR
30
1
Y
10
B
VAL
175
B
VAL
114
1
Y
10
B
ASN
176
B
ASN
115
1
Y
10
B
GLN
177
B
GLN
116
1
Y
10
B
GLN
178
B
GLN
117
1
Y
10
B
GLU
179
B
GLU
118
1
Y
10
B
SER
180
B
SER
119
1
Y
10
B
SER
181
B
SER
120
1
Y
10
B
ASP
182
B
ASP
121
1
Y
10
B
SER
183
B
SER
122
1
Y
10
B
GLY
184
B
GLY
123
1
Y
10
B
THR
185
B
THR
124
1
Y
10
B
SER
186
B
SER
125
1
Y
10
B
VAL
187
B
VAL
126
1
Y
10
B
SER
188
B
SER
127
1
Y
10
B
GLU
189
B
GLU
128
1
Y
10
B
ASN
190
B
ASN
129
1
Y
1
B
B
OD2
HZ1
ASP
LYS
133
135
1.50
1
A
A
N
O
SER
GLY
1
51
2.14
2
B
B
HZ2
OD1
LYS
ASP
110
111
1.50
2
A
B
OD2
HZ3
ASP
LYS
35
116
1.53
2
B
B
OE2
HH
GLU
TYR
117
121
1.59
2
A
A
N
O
SER
GLY
1
51
2.12
4
A
A
N
O
SER
GLY
1
51
2.14
5
B
B
OE1
HZ2
GLU
LYS
134
135
1.54
5
A
B
OD2
HZ1
ASP
LYS
35
116
1.56
6
A
B
OD2
HZ3
ASP
LYS
35
116
1.52
6
A
A
N
O
SER
GLY
1
51
2.16
7
A
A
N
O
SER
GLY
1
51
2.19
8
A
B
OD2
HZ1
ASP
LYS
35
116
1.56
8
B
B
HZ1
O
LYS
THR
110
112
1.60
8
A
A
N
O
SER
GLY
1
51
2.13
9
B
B
HZ3
OD2
LYS
ASP
129
145
1.56
1
B
ARG
130
0.108
SIDE CHAIN
3
A
TYR
15
0.070
SIDE CHAIN
4
A
TYR
15
0.070
SIDE CHAIN
4
B
ARG
130
0.078
SIDE CHAIN
5
A
TYR
15
0.069
SIDE CHAIN
5
A
ARG
34
0.083
SIDE CHAIN
5
A
ARG
45
0.138
SIDE CHAIN
6
A
ARG
34
0.086
SIDE CHAIN
8
A
ARG
34
0.082
SIDE CHAIN
8
B
TYR
121
0.080
SIDE CHAIN
1
-3.50
0.50
120.30
116.80
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
33
33
33
N
2
-4.40
0.50
120.30
115.90
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
34
34
34
N
9
-3.85
0.50
120.30
116.45
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
33
33
33
N
10
-3.04
0.50
120.30
117.26
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
33
33
33
N
1
A
ALA
8
175.16
87.22
1
A
ALA
21
-58.34
94.59
1
A
ALA
41
-161.30
25.59
1
B
ARG
130
75.15
49.27
1
B
GLN
136
-140.22
58.67
2
A
ALA
8
-173.97
85.21
2
A
ALA
41
-157.39
21.53
2
B
ARG
130
74.91
59.04
2
B
GLN
136
-111.84
63.30
3
A
SER
6
-68.65
3.99
3
A
ALA
8
-167.58
84.79
3
A
ALA
21
-51.70
93.71
3
A
ALA
41
-160.17
29.91
3
B
ARG
130
71.98
53.67
4
A
ALA
8
-178.60
87.32
4
A
ALA
21
-48.86
93.32
4
A
ALA
41
-151.69
6.65
4
B
ARG
130
72.04
53.51
4
B
GLN
136
-107.67
57.12
5
A
ALA
8
-150.52
85.96
5
A
ALA
21
-62.60
85.25
5
A
LEU
29
-88.95
33.76
5
A
CYS
32
-107.30
-161.29
5
A
ARG
33
-150.45
-37.38
5
A
ALA
41
-156.44
24.88
5
B
ARG
130
77.34
50.92
5
B
GLN
136
-108.81
63.36
5
B
ASN
144
76.55
-27.11
6
A
ALA
8
-175.78
89.17
6
A
THR
10
-127.38
-60.40
6
A
ALA
21
-69.72
89.16
6
A
ALA
41
-161.35
40.61
6
B
ARG
130
76.02
41.53
6
B
GLN
136
-109.67
53.79
6
B
ASN
144
76.24
-36.06
6
B
GLU
160
-91.18
46.70
7
A
ALA
8
-166.83
89.13
7
A
ALA
21
-45.61
93.49
7
A
LYS
27
79.82
78.77
7
B
TYR
113
-128.40
-166.83
7
B
ARG
130
72.29
49.30
7
B
GLN
136
-115.34
56.59
7
B
GLN
137
-60.92
5.46
7
B
TYR
141
-105.90
78.60
7
B
CYS
142
-86.34
37.81
7
B
ASN
144
70.08
43.93
8
A
ALA
8
174.53
89.60
8
A
ALA
21
-64.87
92.60
8
A
ALA
41
-168.23
24.82
8
B
ASP
111
-54.44
-9.42
8
B
GLN
136
-114.88
69.04
9
A
ALA
8
-166.79
92.36
9
A
ALA
21
-54.32
91.14
9
A
LYS
27
70.32
51.88
9
A
CYS
32
-103.91
-141.53
9
A
ARG
33
-169.61
-39.67
9
A
ALA
41
-150.03
16.06
9
B
ARG
130
71.41
45.12
9
B
GLN
136
-116.93
62.55
9
B
ASN
144
72.97
-31.22
9
B
GLU
160
-79.34
49.22
10
A
ALA
8
-171.27
87.66
10
A
ALA
21
-65.26
88.97
10
A
ALA
41
-153.62
33.57
10
B
ARG
130
71.82
49.84
10
B
GLN
136
-96.13
59.65
Solution structure of Hdm2 with engineered cyclotide
1
N
N
2
N
N
A
SER
11
A
SER
11
HELX_P
A
LEU
19
A
LEU
19
1
1
9
B
LYS
96
B
LYS
35
HELX_P
B
LYS
104
B
LYS
43
1
2
9
B
THR
114
B
THR
53
HELX_P
B
ARG
130
B
ARG
69
1
3
17
B
ASP
145
B
ASP
84
HELX_P
B
GLY
152
B
GLY
91
1
4
8
B
GLU
160
B
GLU
99
HELX_P
B
ARG
170
B
ARG
109
1
5
11
disulf
2.034
A
CYS
25
A
SG
CYS
25
1_555
A
CYS
42
A
SG
CYS
42
1_555
disulf
2.029
A
CYS
32
A
SG
CYS
32
1_555
A
CYS
44
A
SG
CYS
44
1_555
disulf
2.020
A
CYS
38
A
SG
CYS
38
1_555
A
CYS
50
A
SG
CYS
50
1_555
covale
1.371
both
A
SER
1
A
N
SER
1
1_555
A
GLY
51
A
C
GLY
51
1_555
PROTEIN BINDING/SIGNALING PROTEIN
Hdm2 oncoprotein, MCoTI-I cyclotide, p53 tumor suppressor, PROTEIN BINDING-SIGNALING PROTEIN complex
MDM2_HUMAN
UNP
2
17
Q00987
SQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEH
RKIYTMIYRNLVVVNQQESSDSGTSVSEN
2M86
PDB
1
2M86
17
125
2M86
82
190
Q00987
B
1
21
129
1
51
2M86
1
51
2M86
A
2
1
51
1
expression tag
GLY
62
2M86
B
Q00987
UNP
1
1
expression tag
SER
63
2M86
B
Q00987
UNP
2
1
expression tag
SER
64
2M86
B
Q00987
UNP
3
1
expression tag
HIS
65
2M86
B
Q00987
UNP
4
1
expression tag
HIS
66
2M86
B
Q00987
UNP
5
1
expression tag
HIS
67
2M86
B
Q00987
UNP
6
1
expression tag
HIS
68
2M86
B
Q00987
UNP
7
1
expression tag
HIS
69
2M86
B
Q00987
UNP
8
1
expression tag
HIS
70
2M86
B
Q00987
UNP
9
1
expression tag
SER
71
2M86
B
Q00987
UNP
10
1
expression tag
SER
72
2M86
B
Q00987
UNP
11
1
expression tag
GLY
73
2M86
B
Q00987
UNP
12
1
expression tag
LEU
74
2M86
B
Q00987
UNP
13
1
expression tag
VAL
75
2M86
B
Q00987
UNP
14
1
expression tag
PRO
76
2M86
B
Q00987
UNP
15
1
expression tag
ARG
77
2M86
B
Q00987
UNP
16
1
expression tag
GLY
78
2M86
B
Q00987
UNP
17
1
expression tag
SER
79
2M86
B
Q00987
UNP
18
1
expression tag
HIS
80
2M86
B
Q00987
UNP
19
1
expression tag
MET
81
2M86
B
Q00987
UNP
20
2
anti-parallel
B
ILE
139
B
ILE
78
B
TYR
141
B
TYR
80
B
SER
155
B
SER
94
B
SER
157
B
SER
96