1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Martin-Pintado, N. Deleavey, G. Portella, G. Campos, R. Orozco, M. Damha, M. Gonzalez, C. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C10 H13 F N5 O6 P 349.212 n 2'-deoxy-2'-fluoroadenosine 5'-(dihydrogen phosphate) DNA linking C9 H13 F N3 O7 P 325.188 n 4-amino-1-(2-deoxy-2-fluoro-5-O-phosphono-beta-D-arabinofuranosyl)pyrimidin-2(1H)-one 2'-FLUORO-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE DNA linking C9 H13 F N3 O7 P 325.188 n 2'-deoxy-2'-fluorocytidine 5'-(dihydrogen phosphate) DNA linking C10 H13 F N5 O7 P 365.212 n 2'-deoxy-2'-fluoroguanosine 5'-(dihydrogen phosphate) DNA linking C10 H14 F N2 O8 P 340.199 n 2'-DEOXY-2'-FLUORO-ARABINO-FURANOSYL THYMINE-5'-PHOSPHATE DNA linking C9 H12 F N2 O8 P 326.172 n 2'-deoxy-2'-fluorouridine 5'-(dihydrogen phosphate) DNA linking GE Angew.Chem.Int.Ed.Engl. 9999 1433-7851 52 12065 12068 10.1002/anie.201305710 24115468 Backbone FCHO Hydrogen Bonds in 2'F-Substituted Nucleic Acids. 2013 10.2210/pdb2m8a/pdb pdb_00002m8a 3865.255 2'F-RNA/2'F-ANA chimeric duplex 2 syn polymer no yes (CFZ)(GF2)(CFZ)(GF2)(AF2)(AF2)(TAF)(UFT)(CFL)(GF2)(CFL)(GF2) XXXXXXTUCXCX A,B polydeoxyribonucleotide/polyribonucleotide hybrid n n n n n n n n n n n n database_2 pdbx_database_status pdbx_nmr_software pdbx_nmr_spectrometer struct_conn repository Initial release Database references Data collection Database references Derived calculations Other 1 0 2013-11-27 1 1 2014-05-21 1 2 2023-06-14 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.status_code_nmr_data _pdbx_nmr_software.name _pdbx_nmr_spectrometer.model _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id BMRB Y RCSB 2013-05-14 REL REL REL REL structures with the lowest energy 20 10 2D 1H-1H NOESY 2D 1H-1H NOESY 2D DQF-COSY 2D 1H-1H TOCSY 0.6 mM 100 mM 25 mM 0.6 mM 100 mM 25 mM 125 7.0 ambient atm 283 K 125 7.0 1 atm 298 K molecular dynamics 1 closest to the average 0.6 mM DNA/RNA (5'-R((CFZ)P*(GFZ)P*(CFZ)P*(GFZ)P*(AF2)P*(AF2)D(P*(TAF)P*(UFT)P*(CFL)P*(GFZ)P*(CFL)P*(GFZ))-3'), 100 mM sodium chloride, 25 mM sodium phosphate, 90% H2O/10% D2O 90% H2O/10% D2O 0.6 mM DNA/RNA (5'-R((CFZ)P*(GFZ)P*(CFZ)P*(GFZ)P*(AF2)P*(AF2)D(P*(TAF)P*(UFT)P*(CFL)P*(GFZ)P*(CFL)P*(GFZ))-3'), 100 mM sodium chloride, 25 mM sodium phosphate, 100% D2O 100% D2O Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman geometry optimization Amber Koradi, Billeter and Wuthrich data analysis MOLMOL Goddard peak picking Sparky Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman refinement Amber 600 Bruker AVANCE Bruker Avance 800 Bruker AVANCE Bruker Avance 800 Varian INOVA Varian INOVA 700 Bruker AVANCE Bruker Avance CFZ 1 n 1 CFZ 1 A GF2 2 n 2 GF2 2 A CFZ 3 n 3 CFZ 3 A GF2 4 n 4 GF2 4 A AF2 5 n 5 AF2 5 A AF2 6 n 6 AF2 6 A TAF 7 n 7 TAF 7 A UFT 8 n 8 UFT 8 A CFL 9 n 9 CFL 9 A GF2 10 n 10 GF2 10 A CFL 11 n 11 CFL 11 A GF2 12 n 12 GF2 12 A CFZ 13 n 1 CFZ 13 B GF2 14 n 2 GF2 14 B CFZ 15 n 3 CFZ 15 B GF2 16 n 4 GF2 16 B AF2 17 n 5 AF2 17 B AF2 18 n 6 AF2 18 B TAF 19 n 7 TAF 19 B UFT 20 n 8 UFT 20 B CFL 21 n 9 CFL 21 B GF2 22 n 10 GF2 22 B CFL 23 n 11 CFL 23 B GF2 24 n 12 GF2 24 B author_defined_assembly 2 dimeric A CFZ 1 A CFZ 1 DC A GF2 2 A GF2 2 DG A CFZ 3 A CFZ 3 DC A GF2 4 A GF2 4 DG A AF2 5 A AF2 5 DA A AF2 6 A AF2 6 DA A TAF 7 A TAF 7 DT A UFT 8 A UFT 8 DU A CFL 9 A CFL 9 DC A GF2 10 A GF2 10 DG A CFL 11 A CFL 11 DC A GF2 12 A GF2 12 DG B CFZ 13 B CFZ 1 DC B GF2 14 B GF2 2 DG B CFZ 15 B CFZ 3 DC B GF2 16 B GF2 4 DG B AF2 17 B AF2 5 DA B AF2 18 B AF2 6 DA B TAF 19 B TAF 7 DT B UFT 20 B UFT 8 DU B CFL 21 B CFL 9 DC B GF2 22 B GF2 10 DG B CFL 23 B CFL 11 DC B GF2 24 B GF2 12 DG 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 closest to the average, model1 2'F-ANA/2'F-RNA alternated sequences 1 N N 1 N N covale 1.609 both A CFZ 1 A O3' CFZ 1 1_555 A GF2 2 A P GF2 2 1_555 covale 1.623 one A GF2 2 A O3' GF2 2 1_555 A CFZ 3 A P CFZ 3 1_555 covale 1.628 both A CFZ 3 A O3' CFZ 3 1_555 A GF2 4 A P GF2 4 1_555 covale 1.617 one A GF2 4 A O3' GF2 4 1_555 A AF2 5 A P AF2 5 1_555 covale 1.618 one A AF2 5 A O3' AF2 5 1_555 A AF2 6 A P AF2 6 1_555 covale 1.615 one A AF2 6 A O3' AF2 6 1_555 A TAF 7 A P TAF 7 1_555 covale 1.634 one A TAF 7 A O3' TAF 7 1_555 A UFT 8 A P UFT 8 1_555 covale 1.612 both A UFT 8 A O3' UFT 8 1_555 A CFL 9 A P CFL 9 1_555 covale 1.624 one A CFL 9 A O3' CFL 9 1_555 A GF2 10 A P GF2 10 1_555 covale 1.622 one A GF2 10 A O3' GF2 10 1_555 A CFL 11 A P CFL 11 1_555 covale 1.626 one A CFL 11 A O3' CFL 11 1_555 A GF2 12 A P GF2 12 1_555 covale 1.611 both B CFZ 13 B O3' CFZ 1 1_555 B GF2 14 B P GF2 2 1_555 covale 1.627 one B GF2 14 B O3' GF2 2 1_555 B CFZ 15 B P CFZ 3 1_555 covale 1.619 both B CFZ 15 B O3' CFZ 3 1_555 B GF2 16 B P GF2 4 1_555 covale 1.628 one B GF2 16 B O3' GF2 4 1_555 B AF2 17 B P AF2 5 1_555 covale 1.619 one B AF2 17 B O3' AF2 5 1_555 B AF2 18 B P AF2 6 1_555 covale 1.617 one B AF2 18 B O3' AF2 6 1_555 B TAF 19 B P TAF 7 1_555 covale 1.638 one B TAF 19 B O3' TAF 7 1_555 B UFT 20 B P UFT 8 1_555 covale 1.637 both B UFT 20 B O3' UFT 8 1_555 B CFL 21 B P CFL 9 1_555 covale 1.631 one B CFL 21 B O3' CFL 9 1_555 B GF2 22 B P GF2 10 1_555 covale 1.615 one B GF2 22 B O3' GF2 10 1_555 B CFL 23 B P CFL 11 1_555 covale 1.627 one B CFL 23 B O3' CFL 11 1_555 B GF2 24 B P GF2 12 1_555 DNA, RNA A-form, 12-mer, Dickerson Drew dodecamer, Modified nucleotides, DNA, RNA 2M8A PDB 1 2M8A 1 12 2M8A 1 12 2M8A A 1 1 12 13 24 2M8A 13 24 2M8A B 1 1 12