1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Aiyer, S.
Rossi, P.
Schneider, W.M.
Chander, A.
Roth, M.J.
Montelione, G.T.
Northeast Structural Genomics Consortium (NESG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
S
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
C
N
80
N
C
N
81
N
O
N
82
N
N
N
83
N
O
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
N
N
95
S
C
N
96
N
C
N
97
N
O
N
98
N
C
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
N
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
N
N
124
S
C
N
125
N
C
N
126
N
O
N
127
N
C
Y
128
N
C
Y
129
N
N
Y
130
N
C
Y
131
N
C
Y
132
N
N
N
133
N
O
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
N
N
145
S
C
N
146
N
C
N
147
N
O
N
148
S
C
N
149
N
C
N
150
N
C
N
151
N
C
N
152
N
O
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
N
N
167
S
C
N
168
N
C
N
169
N
O
N
170
N
C
N
171
N
C
N
172
N
C
N
173
N
C
N
174
N
O
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
N
N
189
S
C
N
190
N
C
N
191
N
O
N
192
N
C
N
193
N
C
N
194
N
C
N
195
N
C
N
196
N
N
N
197
N
O
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
N
N
214
S
C
N
215
N
C
N
216
N
O
N
217
N
C
N
218
N
C
N
219
N
S
N
220
N
C
N
221
N
O
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
N
N
234
S
C
N
235
N
C
N
236
N
O
N
237
N
C
N
238
N
C
N
239
N
C
N
240
N
O
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
N
255
N
O
N
256
N
O
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
N
N
265
S
C
N
266
N
C
N
267
N
O
N
268
R
C
N
269
N
O
N
270
N
C
N
271
N
O
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
N
N
282
S
C
N
283
N
C
N
284
N
O
N
285
N
C
Y
286
N
C
Y
287
N
C
Y
288
N
C
Y
289
N
N
Y
290
N
C
Y
291
N
C
Y
292
N
C
Y
293
N
C
Y
294
N
C
N
295
N
O
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
N
N
309
S
C
N
310
N
C
N
311
N
O
N
312
N
C
Y
313
N
C
Y
314
N
C
Y
315
N
C
Y
316
N
C
Y
317
N
C
Y
318
N
C
N
319
N
O
N
320
N
O
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
N
N
333
S
C
N
334
N
C
N
335
N
O
N
336
N
C
N
337
N
C
N
338
N
C
N
339
N
O
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
Y
127
N
sing
Y
128
N
doub
Y
129
N
doub
N
130
N
sing
Y
131
N
sing
N
132
N
sing
Y
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
doub
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
doub
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
doub
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
doub
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
doub
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
doub
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
doub
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
doub
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
Y
279
N
doub
Y
280
N
sing
Y
281
N
sing
N
282
N
sing
Y
283
N
doub
Y
284
N
sing
Y
285
N
sing
N
286
N
sing
Y
287
N
sing
Y
288
N
doub
N
289
N
sing
Y
290
N
doub
N
291
N
sing
Y
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
doub
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
Y
307
N
doub
Y
308
N
sing
Y
309
N
sing
N
310
N
sing
Y
311
N
doub
N
312
N
sing
Y
313
N
doub
N
314
N
sing
Y
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
doub
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
UK
Nucleic Acids Res.
NARHAD
0389
0305-1048
42
5917
5928
10.1093/nar/gku175
24623816
Altering murine leukemia virus integration through disruption of the integrase and BET protein family interaction.
2014
10.2210/pdb2m9u/pdb
pdb_00002m9u
10.13018/BMR19299
10131.592
Integrase p46
DNA binding C terminal domain (CTD) residues 1659-1738
1
man
polymer
IN
no
no
HHHHHHSHMVGDTVWVRRHQTKNLEPRWKGPYTVLLTTPTALKVDGIAAWIHAAHVKAADPGGGPSSRLTWRVQRSQNPL
KIRLTREAP
HHHHHHSHMVGDTVWVRRHQTKNLEPRWKGPYTVLLTTPTALKVDGIAAWIHAAHVKAADPGGGPSSRLTWRVQRSQNPL
KIRLTREAP
A
NESG-OR41A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
gag-pol
928306
Moloney murine leukemia virus isolate Shinnick
469008
Escherichia coli
BL21(DE3)
pET15NESG
Northeast Structural Genomics Consortium
NESG
PSI:Biology
database_2
pdbx_database_status
pdbx_nmr_software
pdbx_nmr_spectrometer
struct_ref
struct_ref_seq_dif
chem_comp_atom
chem_comp_bond
database_2
repository
Initial release
Database references
Database references
Data collection
Database references
Other
Data collection
Database references
1
0
2013-12-18
1
1
2014-04-02
1
2
2014-06-04
1
3
2023-06-14
1
4
2024-05-15
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_nmr_data
_pdbx_nmr_software.name
_pdbx_nmr_spectrometer.model
_struct_ref.pdbx_seq_one_letter_code
_struct_ref_seq_dif.details
_database_2.pdbx_DOI
Y
BMRB
Y
RCSB
2013-06-19
REL
REL
REL
REL
44
structures with the lowest energy
100
20
8.7
0.02
2D 1H-15N HSQC
2D 1H-13C HSQC
3D HNCO
3D CBCA(CO)NH
3D HNCACB
3D HBHA(CO)NH
3D HCCH-TOCSY
3D 13C-edited_NOESY
3D 1H-15N NOESY
3D 13C-edited_NOESY
2D 1H-15N HSQC
2D 1H-13C HSQC
0.5
mM
[U-100% 13C; U-100% 15N]
0.5
mM
[U-10% 13C; U-100% 15N]
50mM K-glutamate, 100mM NaCl
6.5
ambient
298
K
The structure was determined using triple resonance NMR spectroscopy. Automated backbone assignments were made using AutoAssign software. Sidechain assignments were completed manually. Initial NOESY assignments for the monomer were made using AutoStructure and CYANA-2.1. The oligomeric state was confirmed to be a monomer by measuring the correlation time using 1D T1 and T2 experiments. A total of 100 structures were calculated and 20 best conformers were then refined in a shell of water using CNS. Final structure quality factors were determined using the PSVS server: ordered residues are defined as (7-18 and 24-61). (a) RMSD (ordered residues) all backbone atoms: 0.6A; all heavy atoms: 0.9A. (b) Ramachandran statistics for all ordered residues: Most favoured region: 87.2%; additionally allowed region: 12.4%; generously allowed region: 0.3% and disallowed region: 0.0%. (c) Procheck scores for all ordered residues (Raw/Z) phi/psi -0.81/-2.87; all dihedral angles: -0.45/-2.66. (d) MolProbity clash score (Raw/Z): 13.47/-0.79. (e) RPF scores for the goodness of fit to NOESY data:- Recall: 0.888; precision: 0.968; F-measure: 0.926; DP score: 0.821
simulated annealing
1
lowest energy
0.5 mM [U-100% 13C; U-100% 15N] MLV IN CTD, 90% H2O/10% D2O
90% H2O/10% D2O
0.5 mM [U-10% 13C; U-100% 15N] MLV IN CTD, 90% H2O/10% D2O
90% H2O/10% D2O
Zimmerman, Moseley, Kulikowski and Montelione
chemical shift assignment
AutoAssign
2.2.1
Huang, Tejero, Powers and Montelione
chemical shift assignment
AutoStructure
2.2.1
Huang, Tejero, Powers and Montelione
structure solution
AutoStructure
2.2.1
Guntert, Mumenthaler and Wuthrich
geometry optimization
CYANA
2.1
Guntert, Mumenthaler and Wuthrich
structure solution
CYANA
2.1
Brunger, Adams, Clore, Gros, Nilges and Read
geometry optimization
CNS
2.0.6
Brunger, Adams, Clore, Gros, Nilges and Read
refinement
CNS
2.0.6
Goddard
peak picking
Sparky
2.1
800
Bruker
AVANCE
Bruker Avance
HIS
1
n
1
HIS
1
A
HIS
2
n
2
HIS
2
A
HIS
3
n
3
HIS
3
A
HIS
4
n
4
HIS
4
A
HIS
5
n
5
HIS
5
A
HIS
6
n
6
HIS
6
A
SER
7
n
7
SER
7
A
HIS
8
n
8
HIS
8
A
MET
9
n
9
MET
9
A
VAL
10
n
10
VAL
10
A
GLY
11
n
11
GLY
11
A
ASP
12
n
12
ASP
12
A
THR
13
n
13
THR
13
A
VAL
14
n
14
VAL
14
A
TRP
15
n
15
TRP
15
A
VAL
16
n
16
VAL
16
A
ARG
17
n
17
ARG
17
A
ARG
18
n
18
ARG
18
A
HIS
19
n
19
HIS
19
A
GLN
20
n
20
GLN
20
A
THR
21
n
21
THR
21
A
LYS
22
n
22
LYS
22
A
ASN
23
n
23
ASN
23
A
LEU
24
n
24
LEU
24
A
GLU
25
n
25
GLU
25
A
PRO
26
n
26
PRO
26
A
ARG
27
n
27
ARG
27
A
TRP
28
n
28
TRP
28
A
LYS
29
n
29
LYS
29
A
GLY
30
n
30
GLY
30
A
PRO
31
n
31
PRO
31
A
TYR
32
n
32
TYR
32
A
THR
33
n
33
THR
33
A
VAL
34
n
34
VAL
34
A
LEU
35
n
35
LEU
35
A
LEU
36
n
36
LEU
36
A
THR
37
n
37
THR
37
A
THR
38
n
38
THR
38
A
PRO
39
n
39
PRO
39
A
THR
40
n
40
THR
40
A
ALA
41
n
41
ALA
41
A
LEU
42
n
42
LEU
42
A
LYS
43
n
43
LYS
43
A
VAL
44
n
44
VAL
44
A
ASP
45
n
45
ASP
45
A
GLY
46
n
46
GLY
46
A
ILE
47
n
47
ILE
47
A
ALA
48
n
48
ALA
48
A
ALA
49
n
49
ALA
49
A
TRP
50
n
50
TRP
50
A
ILE
51
n
51
ILE
51
A
HIS
52
n
52
HIS
52
A
ALA
53
n
53
ALA
53
A
ALA
54
n
54
ALA
54
A
HIS
55
n
55
HIS
55
A
VAL
56
n
56
VAL
56
A
LYS
57
n
57
LYS
57
A
ALA
58
n
58
ALA
58
A
ALA
59
n
59
ALA
59
A
ASP
60
n
60
ASP
60
A
PRO
61
n
61
PRO
61
A
GLY
62
n
62
GLY
62
A
GLY
63
n
63
GLY
63
A
GLY
64
n
64
GLY
64
A
PRO
65
n
65
PRO
65
A
SER
66
n
66
SER
66
A
SER
67
n
67
SER
67
A
ARG
68
n
68
ARG
68
A
LEU
69
n
69
LEU
69
A
THR
70
n
70
THR
70
A
TRP
71
n
71
TRP
71
A
ARG
72
n
72
ARG
72
A
VAL
73
n
73
VAL
73
A
GLN
74
n
74
GLN
74
A
ARG
75
n
75
ARG
75
A
SER
76
n
76
SER
76
A
GLN
77
n
77
GLN
77
A
ASN
78
n
78
ASN
78
A
PRO
79
n
79
PRO
79
A
LEU
80
n
80
LEU
80
A
LYS
81
n
81
LYS
81
A
ILE
82
n
82
ILE
82
A
ARG
83
n
83
ARG
83
A
LEU
84
n
84
LEU
84
A
THR
85
n
85
THR
85
A
ARG
86
n
86
ARG
86
A
GLU
87
n
87
GLU
87
A
ALA
88
n
88
ALA
88
A
PRO
89
n
89
PRO
89
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
ILE
51
A
O
ILE
51
A
N
LEU
42
A
N
LEU
42
A
O
LYS
43
A
O
LYS
43
A
N
LEU
36
A
N
LEU
36
A
O
TYR
32
A
O
TYR
32
A
N
VAL
14
A
N
VAL
14
A
N
TRP
15
A
N
TRP
15
A
O
LYS
57
A
O
LYS
57
1
A
HIS
6
-66.75
89.04
1
A
THR
21
-66.34
85.43
1
A
PRO
39
-41.78
106.29
1
A
ALA
49
-152.44
-59.02
1
A
PRO
65
-80.70
41.74
1
A
SER
66
-100.34
-68.83
1
A
ARG
72
-87.30
38.79
1
A
ARG
75
-69.08
89.88
1
A
ASN
78
-155.33
-58.14
1
A
GLU
87
64.44
89.99
2
A
ALA
49
-150.34
-56.81
2
A
SER
67
-148.27
-61.38
2
A
LEU
69
-80.73
-76.64
2
A
THR
70
-169.33
112.90
2
A
TRP
71
-141.98
-60.55
2
A
ARG
72
62.48
81.97
2
A
ASN
78
65.23
118.07
2
A
LYS
81
-167.21
116.89
2
A
ARG
83
-155.97
88.56
3
A
GLN
20
61.36
-74.80
3
A
ALA
49
-149.22
-55.61
3
A
ALA
58
-58.48
106.85
3
A
SER
66
-159.88
-77.56
3
A
THR
70
-152.09
-54.49
3
A
SER
76
-144.91
-94.75
3
A
ASN
78
70.55
92.97
4
A
HIS
4
77.06
-31.03
4
A
ASP
12
-57.75
102.40
4
A
PRO
39
-40.85
109.72
4
A
ALA
49
-151.04
-57.53
4
A
ALA
59
-166.05
114.94
4
A
PRO
65
-67.17
90.72
4
A
ARG
72
-139.57
-79.70
4
A
ASN
78
57.06
71.90
4
A
LEU
80
-63.16
99.74
4
A
ARG
86
-136.75
-83.70
5
A
ASP
12
-56.02
106.30
5
A
PRO
39
-49.12
107.85
5
A
ALA
49
-150.19
-59.59
5
A
ARG
72
-93.84
45.34
5
A
GLN
77
-153.92
-45.87
6
A
HIS
2
-115.39
69.69
6
A
HIS
3
-166.87
94.55
6
A
ALA
49
-150.75
-57.22
6
A
PRO
65
-82.24
30.97
6
A
ARG
68
73.84
87.46
6
A
LEU
69
-67.70
93.18
6
A
ARG
72
-67.06
92.05
6
A
SER
76
-174.00
-66.10
6
A
GLN
77
-147.30
-58.50
6
A
ASN
78
-157.31
62.24
6
A
THR
85
68.59
100.26
6
A
GLU
87
-63.17
87.99
7
A
HIS
3
-156.63
28.27
7
A
HIS
5
71.13
93.76
7
A
HIS
19
-175.42
147.91
7
A
THR
40
75.34
-13.83
7
A
ALA
49
-152.08
-56.18
7
A
SER
76
176.03
136.80
7
A
ASN
78
-159.86
-53.56
7
A
ALA
88
67.14
84.54
8
A
THR
40
54.74
17.22
8
A
ALA
49
-151.42
-60.72
8
A
ARG
75
-100.44
64.04
8
A
SER
76
-172.83
-168.74
8
A
ALA
88
54.37
74.25
9
A
ARG
17
-69.16
93.72
9
A
GLN
20
-74.09
-70.90
9
A
PRO
39
-53.27
108.85
9
A
ALA
49
-148.91
-58.39
9
A
PRO
65
-81.59
31.44
9
A
SER
67
-91.15
-77.05
9
A
ALA
88
61.86
91.44
10
A
HIS
8
-59.21
101.97
10
A
GLN
20
-66.24
-72.51
10
A
THR
40
75.58
-2.28
10
A
ALA
49
-150.28
-58.03
10
A
PRO
61
-67.29
3.67
10
A
THR
70
-64.36
98.82
10
A
ARG
72
56.52
77.60
10
A
GLN
77
61.71
82.79
10
A
ASN
78
-32.47
93.93
10
A
ARG
83
-170.68
108.06
11
A
HIS
5
-132.55
-62.67
11
A
ASP
12
-57.62
97.74
11
A
PRO
39
-46.82
108.98
11
A
ALA
49
-150.35
-56.15
11
A
SER
66
-114.58
-71.58
11
A
ARG
68
-168.35
-34.76
11
A
ARG
72
-95.76
59.24
11
A
ARG
75
-62.49
94.91
11
A
ASN
78
-169.24
79.77
11
A
LEU
84
58.36
19.71
12
A
GLN
20
-57.94
-70.02
12
A
PRO
39
-39.56
121.61
12
A
THR
40
53.07
14.48
12
A
ALA
49
-151.17
-59.26
12
A
SER
67
-151.16
-69.56
12
A
LEU
69
-94.98
-71.01
12
A
GLN
77
-161.28
-35.19
12
A
ASN
78
75.56
93.45
12
A
THR
85
-113.48
64.19
12
A
GLU
87
-129.76
-80.69
13
A
HIS
3
-157.24
52.07
13
A
HIS
4
-69.08
81.77
13
A
HIS
5
-76.63
-82.12
13
A
ASP
12
-58.28
109.39
13
A
GLN
20
65.99
-70.20
13
A
PRO
39
-43.62
109.00
13
A
ALA
49
-150.31
-58.10
13
A
SER
76
-153.93
-141.00
13
A
ASN
78
-59.66
108.14
14
A
PRO
39
-46.35
108.44
14
A
ALA
49
-151.06
-57.59
15
A
HIS
19
-77.46
-78.32
15
A
PRO
39
-51.92
108.18
15
A
ALA
49
-150.79
-58.38
15
A
SER
67
-149.47
-21.88
15
A
GLN
77
-155.38
-52.13
15
A
ASN
78
70.79
74.92
16
A
HIS
5
-161.86
43.41
16
A
HIS
6
67.08
152.90
16
A
GLN
20
-79.38
-155.51
16
A
PRO
39
-27.28
127.34
16
A
THR
40
86.79
-12.22
16
A
ALA
49
-154.12
-57.61
16
A
ASN
78
66.05
140.43
16
A
ARG
83
73.26
-5.04
16
A
THR
85
-76.24
-161.15
16
A
ALA
88
67.11
94.22
17
A
ALA
49
-152.19
-56.75
17
A
SER
66
-147.97
-82.87
17
A
TRP
71
49.40
27.89
17
A
SER
76
-157.93
-76.53
17
A
ASN
78
60.31
83.90
17
A
ARG
86
-68.10
84.41
18
A
HIS
5
-173.88
86.17
18
A
GLN
20
-82.04
-71.14
18
A
PRO
39
-46.74
108.40
18
A
ALA
49
-149.18
-58.21
18
A
TRP
71
-86.30
-80.25
18
A
ARG
72
-166.79
106.93
18
A
VAL
73
-137.90
-63.62
18
A
THR
85
-114.11
76.29
18
A
ALA
88
-177.34
59.43
19
A
HIS
4
-141.96
36.46
19
A
HIS
19
80.26
113.99
19
A
PRO
39
-50.32
109.45
19
A
ALA
49
-149.78
-50.73
19
A
VAL
73
63.14
-59.64
19
A
GLN
74
-50.45
85.80
19
A
ARG
75
-149.99
-4.34
19
A
ASN
78
58.65
71.09
19
A
ARG
86
71.25
168.76
19
A
ALA
88
-160.64
-51.54
20
A
PRO
39
-46.53
108.91
20
A
ALA
49
-150.45
-58.76
20
A
PRO
65
-68.81
90.21
20
A
ARG
68
62.50
88.12
20
A
LEU
84
-69.57
82.31
lowest energy, model1
Solution NMR structure of the C-terminal domain (CTD) of Moloney murine leukemia virus integrase, Northeast Structural Genomics Target OR41A
1
N
N
VIRAL PROTEIN
SH3 domain, NESG, OR41A-15.1, PSI-Biology, Northeast Structural Genomics Consortium, VIRAL PROTEIN
A
GLY
30
A
GLY
30
1
A
PRO
31
A
PRO
31
-2.00
A
GLY
30
A
GLY
30
2
A
PRO
31
A
PRO
31
-6.76
A
GLY
30
A
GLY
30
3
A
PRO
31
A
PRO
31
1.27
A
GLY
30
A
GLY
30
4
A
PRO
31
A
PRO
31
-3.06
A
GLY
30
A
GLY
30
5
A
PRO
31
A
PRO
31
0.51
A
GLY
30
A
GLY
30
6
A
PRO
31
A
PRO
31
0.77
A
GLY
30
A
GLY
30
7
A
PRO
31
A
PRO
31
-5.24
A
GLY
30
A
GLY
30
8
A
PRO
31
A
PRO
31
-5.35
A
GLY
30
A
GLY
30
9
A
PRO
31
A
PRO
31
4.10
A
GLY
30
A
GLY
30
10
A
PRO
31
A
PRO
31
-9.79
A
GLY
30
A
GLY
30
11
A
PRO
31
A
PRO
31
-1.44
A
GLY
30
A
GLY
30
12
A
PRO
31
A
PRO
31
-4.11
A
GLY
30
A
GLY
30
13
A
PRO
31
A
PRO
31
-4.71
A
GLY
30
A
GLY
30
14
A
PRO
31
A
PRO
31
4.49
A
GLY
30
A
GLY
30
15
A
PRO
31
A
PRO
31
-2.58
A
GLY
30
A
GLY
30
16
A
PRO
31
A
PRO
31
-2.51
A
GLY
30
A
GLY
30
17
A
PRO
31
A
PRO
31
-2.36
A
GLY
30
A
GLY
30
18
A
PRO
31
A
PRO
31
-9.17
A
GLY
30
A
GLY
30
19
A
PRO
31
A
PRO
31
-4.73
A
GLY
30
A
GLY
30
20
A
PRO
31
A
PRO
31
-1.85
POL_MLVMS
UNP
1
1659
P03355
VGDTVWVRRHQTKNLEPRWKGPYTVLLTTPTALKVDGIAAWIHAAHVKAADPGGGPSSRLTWRVQRSQNPLKIRLTREAP
1659
1738
2M9U
10
89
P03355
A
1
10
89
1
expression tag
HIS
1
2M9U
A
P03355
UNP
1
1
expression tag
HIS
2
2M9U
A
P03355
UNP
2
1
expression tag
HIS
3
2M9U
A
P03355
UNP
3
1
expression tag
HIS
4
2M9U
A
P03355
UNP
4
1
expression tag
HIS
5
2M9U
A
P03355
UNP
5
1
expression tag
HIS
6
2M9U
A
P03355
UNP
6
1
expression tag
SER
7
2M9U
A
P03355
UNP
7
1
expression tag
HIS
8
2M9U
A
P03355
UNP
8
1
expression tag
MET
9
2M9U
A
P03355
UNP
9
5
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ILE
51
A
ILE
51
A
HIS
52
A
HIS
52
A
ALA
41
A
ALA
41
A
VAL
44
A
VAL
44
A
ARG
27
A
ARG
27
A
THR
38
A
THR
38
A
ASP
12
A
ASP
12
A
ARG
18
A
ARG
18
A
VAL
56
A
VAL
56
A
ALA
58
A
ALA
58