1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Lim, K.W.
Ng, V.C.M.
Martin-Pintado, N.
Heddi, B.
Phan, A.T.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C10 H13 Br N5 O7 P
426.117
n
8-BROMO-2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
UK
Nucleic Acids Res.
NARHAD
0389
0305-1048
41
10556
10562
10.1093/nar/gkt771
23999095
Structure of the human telomere in Na+ solution: an antiparallel (2+2) G-quadruplex scaffold reveals additional diversity.
2013
10.2210/pdb2mbj/pdb
pdb_00002mbj
8592.370
DNA_(27-MER)
1
syn
polymer
no
yes
(DT)(DT)(DA)(DG)(DG)(DG)(DT)(DT)(DA)(DG)(DG)(DG)(DT)(DT)(DA)(DG)(DG)(DG)(DT)(DT)
(DA)(BGM)(DG)(DG)(DT)(DT)(DA)
TTAGGGTTAGGGTTAGGGTTAGGGTTA
A
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
database_2
pdbx_database_status
pdbx_nmr_software
pdbx_nmr_spectrometer
struct_conn
repository
Initial release
Database references
Data collection
Database references
Derived calculations
Other
1
0
2013-09-18
1
1
2014-01-08
1
2
2023-06-14
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_nmr_data
_pdbx_nmr_software.name
_pdbx_nmr_spectrometer.model
_struct_conn.pdbx_leaving_atom_flag
HUMAN TELOMERE DNA SOLUTION STRUCTURE IN THE PRESENCE OF NA
STRUCTURE AND PACKING OF HUMAN TELOMERIC DNA
HUMAN TELOMERE DNA SOLUTION STRUCTURE IN THE PRESENCE OF K CATIONS NATURAL FORM 1
HUMAN TELOMERE DNA SOLUTION STRUCTURE IN THE PRESENCE OF K CATIONS NATURAL FORM 2
STRUCTURE OF A TWO-G-TETRAD BASKET-TYPE INTRAMOLECULAR G-QUADRUPLEX FORMED BY HUMAN TELOMERIC REPEATS IN K+ SOLUTION
BMRB
Y
RCSB
2013-08-02
REL
REL
REL
REL
structures with the lowest energy
100
10
2D 1H-1H NOESY
2D 1H-1H JR NOESY
2D 1H-1H COSY
2D 1H-1H TOCSY
2D 1H-13C HSQC
2D 1H-13C JR HMBC
H-D EXCHANGE
15N-FILTERED
D-LABELED
1-2
mM
1-2
mM
0.5-2
mM
[U-2% 15N]
0.2-1
mM
[U-100% 2H]
100 mM NA+
7.0
ambient
298
K
DGSA-distance geometry simulated annealing, Distance-restrained molecular dynamics
1
lowest energy
1-2 mM DNA (27-MER), 90% H2O/10% D2O
90% H2O/10% D2O
1-2 mM DNA (27-MER), 100% D2O
100% D2O
0.5-2 mM [U-2% 15N] DNA (27-MER), 90% H2O/10% D2O
90% H2O/10% D2O
0.2-1 mM [U-100% 2H] DNA (27-MER), 90% H2O/10% D2O
90% H2O/10% D2O
Bruker Biospin
processing
TopSpin
2.1
Bruker Biospin
collection
TopSpin
2.1
Felix NMR, Inc.
peak picking
Felix
2007
Schwieters, Kuszewski, Tjandra and Clore
structure solution
X-PLOR NIH
2.29
Schwieters, Kuszewski, Tjandra and Clore
refinement
X-PLOR NIH
2.29
600
Bruker
AVANCE
Bruker Avance
700
Bruker
AVANCE
Bruker Avance
DT
1
n
1
DT
1
A
DT
2
n
2
DT
2
A
DA
3
n
3
DA
3
A
DG
4
n
4
DG
4
A
DG
5
n
5
DG
5
A
DG
6
n
6
DG
6
A
DT
7
n
7
DT
7
A
DT
8
n
8
DT
8
A
DA
9
n
9
DA
9
A
DG
10
n
10
DG
10
A
DG
11
n
11
DG
11
A
DG
12
n
12
DG
12
A
DT
13
n
13
DT
13
A
DT
14
n
14
DT
14
A
DA
15
n
15
DA
15
A
DG
16
n
16
DG
16
A
DG
17
n
17
DG
17
A
DG
18
n
18
DG
18
A
DT
19
n
19
DT
19
A
DT
20
n
20
DT
20
A
DA
21
n
21
DA
21
A
BGM
22
n
22
BGM
22
A
DG
23
n
23
DG
23
A
DG
24
n
24
DG
24
A
DT
25
n
25
DT
25
A
DT
26
n
26
DT
26
A
DA
27
n
27
DA
27
A
author_defined_assembly
1
monomeric
A
BGM
22
A
BGM
22
DG
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
A
H22
O4
DG
DT
11
14
1.50
1
A
A
H1'
O5'
DG
DT
18
19
1.59
2
A
A
H22
O4
DG
DT
11
14
1.59
4
A
A
H22
O4
DG
DT
11
14
1.51
4
A
A
OP2
H73
DT
DT
13
14
1.53
9
A
A
H4'
OP2
DA
BGM
21
22
1.55
8
-3.70
0.60
122.90
119.20
A
A
A
C6
C5
C7
DT
DT
DT
7
7
7
N
lowest energy, model1
Structure of an antiparallel (2+2) G-quadruplex formed by human telomeric repeats in Na+ solution (with G22-to-BrG substitution)
1
N
N
covale
1.613
both
A
DA
21
A
O3'
DA
21
1_555
A
BGM
22
A
P
BGM
22
1_555
covale
1.611
both
A
BGM
22
A
O3'
BGM
22
1_555
A
DG
23
A
P
DG
23
1_555
hydrog
DA-DA MISPAIR
A
DA
3
A
N3
DA
3
1_555
A
DA
21
A
N6
DA
21
1_555
hydrog
TYPE_6_PAIR
A
DG
4
A
N1
DG
4
1_555
A
DG
12
A
O6
DG
12
1_555
hydrog
TYPE_6_PAIR
A
DG
4
A
N2
DG
4
1_555
A
DG
12
A
N7
DG
12
1_555
hydrog
TYPE_6_PAIR
A
DG
4
A
N7
DG
4
1_555
A
BGM
22
A
N2
BGM
22
1_555
hydrog
TYPE_6_PAIR
A
DG
4
A
O6
DG
4
1_555
A
BGM
22
A
N1
BGM
22
1_555
hydrog
TYPE_6_PAIR
A
DG
5
A
N1
DG
5
1_555
A
DG
11
A
O6
DG
11
1_555
hydrog
TYPE_6_PAIR
A
DG
5
A
N2
DG
5
1_555
A
DG
11
A
N7
DG
11
1_555
hydrog
TYPE_6_PAIR
A
DG
5
A
N7
DG
5
1_555
A
DG
23
A
N2
DG
23
1_555
hydrog
TYPE_6_PAIR
A
DG
5
A
O6
DG
5
1_555
A
DG
23
A
N1
DG
23
1_555
hydrog
TYPE_6_PAIR
A
DG
6
A
N7
DG
6
1_555
A
DG
10
A
N2
DG
10
1_555
hydrog
TYPE_6_PAIR
A
DG
6
A
O6
DG
6
1_555
A
DG
10
A
N1
DG
10
1_555
hydrog
TYPE_6_PAIR
A
DG
6
A
N1
DG
6
1_555
A
DG
24
A
O6
DG
24
1_555
hydrog
TYPE_6_PAIR
A
DG
6
A
N2
DG
6
1_555
A
DG
24
A
N7
DG
24
1_555
hydrog
DA-DG MISPAIR
A
DA
9
A
N3
DA
9
1_555
A
DG
10
A
N1
DG
10
1_555
hydrog
WATSON-CRICK
A
DA
9
A
N1
DA
9
1_555
A
DT
25
A
N3
DT
25
1_555
hydrog
WATSON-CRICK
A
DA
9
A
N6
DA
9
1_555
A
DT
25
A
O4
DT
25
1_555
hydrog
TYPE_6_PAIR
A
DG
10
A
N7
DG
10
1_555
A
DG
16
A
N2
DG
16
1_555
hydrog
TYPE_6_PAIR
A
DG
10
A
O6
DG
10
1_555
A
DG
16
A
N1
DG
16
1_555
hydrog
DG-DT MISPAIR
A
DG
11
A
N2
DG
11
1_555
A
DT
14
A
O4
DT
14
1_555
hydrog
TYPE_6_PAIR
A
DG
11
A
N1
DG
11
1_555
A
DG
17
A
O6
DG
17
1_555
hydrog
TYPE_6_PAIR
A
DG
11
A
N2
DG
11
1_555
A
DG
17
A
N7
DG
17
1_555
hydrog
TYPE_6_PAIR
A
DG
12
A
N1
DG
12
1_555
A
DG
18
A
O6
DG
18
1_555
hydrog
TYPE_6_PAIR
A
DG
12
A
N2
DG
12
1_555
A
DG
18
A
N7
DG
18
1_555
hydrog
TYPE_6_PAIR
A
DG
16
A
N7
DG
16
1_555
A
DG
24
A
N2
DG
24
1_555
hydrog
TYPE_6_PAIR
A
DG
16
A
O6
DG
16
1_555
A
DG
24
A
N1
DG
24
1_555
hydrog
TYPE_6_PAIR
A
DG
17
A
N1
DG
17
1_555
A
DG
23
A
O6
DG
23
1_555
hydrog
TYPE_6_PAIR
A
DG
17
A
N2
DG
17
1_555
A
DG
23
A
N7
DG
23
1_555
hydrog
TYPE_6_PAIR
A
DG
18
A
N1
DG
18
1_555
A
BGM
22
A
O6
BGM
22
1_555
hydrog
TYPE_6_PAIR
A
DG
18
A
N2
DG
18
1_555
A
BGM
22
A
N7
BGM
22
1_555
DNA
anticancer targets, G-quadruplex, human telomere, DNA
2MBJ
PDB
1
2MBJ
TTAGGGTTAGGGTTAGGGTTAGGGTTA
1
27
2MBJ
1
27
2MBJ
A
1
1
27