1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Jiang, J. Aduri, R. Chow, C.S. Santalucia, J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking UK Nucleic Acids Res. NARHAD 0389 0305-1048 42 3971 3981 10.1093/nar/gkt1329 24371282 Structure modulation of helix 69 from Escherichia coli 23S ribosomal RNA by pseudouridylations. 2014 10.2210/pdb2meq/pdb pdb_00002meq 6077.673 RNA_(5'-R(P*GP*GP*CP*CP*GP*UP*AP*AP*CP*UP*AP*UP*AP*AP*CP*GP*GP*UP*C)-3') 1 syn polymer no no GGCCGUAACUAUAACGGUC GGCCGUAACUAUAACGGUC A polyribonucleotide n n n n n n n n n n n n n n n n n n n -2.035 1 19 A 1 A 19 -0.383 A_G1:C19_A 1 -1.480 -0.400 -0.035 -0.164 -0.172 1 28 A 2 A 18 3.907 A_G2:U18_A 2 0.113 -2.083 -0.266 -0.268 2.542 1 19 A 3 A 17 2.601 A_C3:G17_A 3 -3.950 -0.140 0.004 -0.143 2.598 1 19 A 4 A 16 -3.314 A_C4:G16_A 4 2.239 0.535 -0.378 -0.236 -1.768 1 19 A 5 A 15 -1.626 A_G5:C15_A 5 -0.051 0.214 -0.169 -0.087 -11.138 A 6 A 13 -77.792 A_U6:A13_A 6 -2.340 1.652 -0.868 1.817 4.153 25.061 A A 1 2 -11.797 A A 19 18 4.018 -5.082 0.660 -1.305 AA_G1G2:U18C19_AA 1 -1.459 3.387 24.506 -1.108 -2.067 4.190 37.688 A A 2 3 -13.032 A A 18 17 4.065 -8.351 0.763 -1.180 AA_G2C3:G17U18_AA 2 -1.539 2.401 36.753 -0.442 -1.436 3.932 32.883 A A 3 4 -5.001 A A 17 16 3.947 -2.825 -1.120 -1.232 AA_C3C4:G16G17_AA 3 2.752 -4.872 32.652 -1.593 2.547 4.421 36.527 A A 4 5 -37.632 A A 16 15 4.951 -22.063 0.349 -0.728 AA_C4G5:C15G16_AA 4 -0.424 0.723 29.291 3.726 -0.650 6.440 51.213 A A 5 6 -15.724 A A 15 13 5.308 -13.173 -2.154 -3.642 AA_G5U6:A13C15_AA 5 -18.615 22.220 46.165 -2.481 0.044 database_2 pdbx_database_status pdbx_nmr_software pdbx_nmr_spectrometer repository Initial release Database references Database references Data collection Database references Other 1 0 2014-01-01 1 1 2014-01-15 1 2 2014-04-16 1 3 2023-06-14 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.status_code_nmr_data _pdbx_nmr_software.name _pdbx_nmr_spectrometer.model BMRB Y RCSB 2013-09-26 REL REL REL REL CONVERGED LOWEST ENERGY STRUCTURES 100 10 2D 1H-13C NATURAL ABUNDANCE HMQC 2D 1H-1H NOESY 2D DQF-COSY 3D 1H-1H-1H TOCSY-NOESY 2D 1H-31P HETCOR 1D 31P 2D 1H-1H NOESY 2D 1H-13C HSQC 3D 1H-13C-1H HCCH-COSY 3D 1H-13C-1H HCCH-TOCSY 3D 1H-13C-13C HCCH-TOCSY 3D 1H-1H-13C NOESY-HMQC 1.0 mM 10 mM 50 mM 0.1 mM 1.0 mM 10 mM 50 mM 0.1 mM 1.0 mM [U-100% 13C; U-100% 15N] 10 mM 50 mM 0.1 mM 70 7.3 ambient 298.2 K simulated annealing, molecular dynamics, torsion angle dynamics 1 lowest energy 1.0 mM RNA (5'-P(GP*GP*CP*CP*GP*UP*AP*AP*CP*UP*AP*UP*AP*AP*CP*GP*GP*UP*C)-3'), 10 mM Potassium Phosphate, 50 mM Potassium Chloride, 0.1 mM EDTA, 100% D2O 100% D2O 1.0 mM RNA (5'-P(GP*GP*CP*CP*GP*UP*AP*AP*CP*UP*AP*UP*AP*AP*CP*GP*GP*UP*C)-3'), 10 mM Potassium Phosphate, 50 mM Potassium Chloride, 0.1 mM EDTA, 90% H2O/10% D2O 90% H2O/10% D2O 1.0 mM [U-100% 13C; U-100% 15N] RNA (5'-P(GP*GP*CP*CP*GP*UP*AP*AP*CP*UP*AP*UP*AP*AP*CP*GP*GP*UP*C)-3'), 10 mM Potassium Phosphate, 50 mM Potassium Chloride, 0.1 mM EDTA, 100% D2O 100% D2O Goddard chemical shift assignment Sparky Goddard data analysis Sparky Brunger, Adams, Clore, Gros, Nilges and Read structure solution CNS 1.2 Brunger, Adams, Clore, Gros, Nilges and Read refinement CNS 1.2 Bruker Biospin collection TopSpin Bruker Biospin processing TopSpin 700 Bruker AVANCE Bruker Avance 400 Varian Mercury Varian Mercury G 1 n 1 G 1 A G 2 n 2 G 2 A C 3 n 3 C 3 A C 4 n 4 C 4 A G 5 n 5 G 5 A U 6 n 6 U 6 A A 7 n 7 A 7 A A 8 n 8 A 8 A C 9 n 9 C 9 A U 10 n 10 U 10 A A 11 n 11 A 11 A U 12 n 12 U 12 A A 13 n 13 A 13 A A 14 n 14 A 14 A C 15 n 15 C 15 A G 16 n 16 G 16 A G 17 n 17 G 17 A U 18 n 18 U 18 A C 19 n 19 C 19 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 lowest energy, model1 Structure of Helix 69 from Escherichia coli 23S Ribosomal RNA 1 N N hydrog WATSON-CRICK A G 1 A N1 G 1 1_555 A C 19 A N3 C 19 1_555 hydrog WATSON-CRICK A G 1 A N2 G 1 1_555 A C 19 A O2 C 19 1_555 hydrog WATSON-CRICK A G 1 A O6 G 1 1_555 A C 19 A N4 C 19 1_555 hydrog TYPE_28_PAIR A G 2 A N1 G 2 1_555 A U 18 A O2 U 18 1_555 hydrog TYPE_28_PAIR A G 2 A O6 G 2 1_555 A U 18 A N3 U 18 1_555 hydrog WATSON-CRICK A C 3 A N3 C 3 1_555 A G 17 A N1 G 17 1_555 hydrog WATSON-CRICK A C 3 A N4 C 3 1_555 A G 17 A O6 G 17 1_555 hydrog WATSON-CRICK A C 3 A O2 C 3 1_555 A G 17 A N2 G 17 1_555 hydrog WATSON-CRICK A C 4 A N3 C 4 1_555 A G 16 A N1 G 16 1_555 hydrog WATSON-CRICK A C 4 A N4 C 4 1_555 A G 16 A O6 G 16 1_555 hydrog WATSON-CRICK A C 4 A O2 C 4 1_555 A G 16 A N2 G 16 1_555 hydrog WATSON-CRICK A G 5 A N1 G 5 1_555 A C 15 A N3 C 15 1_555 hydrog WATSON-CRICK A G 5 A N2 G 5 1_555 A C 15 A O2 C 15 1_555 hydrog WATSON-CRICK A G 5 A O6 G 5 1_555 A C 15 A N4 C 15 1_555 hydrog U-A PAIR A U 6 A O4 U 6 1_555 A A 13 A N6 A 13 1_555 hydrog WATSON-CRICK A U 6 A N3 U 6 1_555 A A 14 A N1 A 14 1_555 hydrog WATSON-CRICK A U 6 A O4 U 6 1_555 A A 14 A N6 A 14 1_555 RNA Helix 69, Ribosomal, RNA 2MEQ PDB 1 2MEQ GGCCGUAACUAUAACGGUC 1 19 2MEQ 1 19 2MEQ A 1 1 19