1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Gamsjaeger, R.
O'Connell, M.R.
Cubeddu, L.
Shepherd, N.E.
Lowry, J.A.
Kwan, A.H.
Vandevenne, M.
Swanton, M.K.
Matthews, J.M.
Mackay, J.P.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
288
35180
35191
10.1074/jbc.M113.482075
24097990
A structural analysis of DNA binding by myelin transcription factor 1 double zinc fingers.
2013
10.2210/pdb2mf8/pdb
pdb_00002mf8
SEVERAL C-N OR O3'-P BONDS LIE OUTSIDE OF THE ACCEPTED RANGE. MANY VALUES OF COVALENT BOND LENGTH AND ANGLE DEVIATE SIGNIFICANTLY FROM STANDARD VALUES.
9579.887
Myelin transcription factor 1
UNP residues 792-880
1
man
polymer
3944.601
DNA (5'-D(*AP*CP*CP*GP*AP*AP*AP*GP*TP*TP*CP*AP*C)-3')
1
syn
polymer
3997.607
DNA (5'-D(*GP*TP*GP*AP*AP*CP*TP*TP*TP*CP*GP*GP*T)-3')
1
syn
polymer
65.409
ZINC ION
2
syn
non-polymer
MyT1, Neural zinc finger factor 2, NZF-2
no
no
GPLGSFDIKKELLTCPTPGCDGSGHITGNYASHRSLSGCPLADKSLRNLMAAHSADLKCPTPGCDGSGHITGNYASHRSL
SGCPRAKKSGLRV
GPLGSFDIKKELLTCPTPGCDGSGHITGNYASHRSLSGCPLADKSLRNLMAAHSADLKCPTPGCDGSGHITGNYASHRSL
SGCPRAKKSGLRV
A
polypeptide(L)
no
no
(DA)(DC)(DC)(DG)(DA)(DA)(DA)(DG)(DT)(DT)(DC)(DA)(DC)
ACCGAAAGTTCAC
B
polydeoxyribonucleotide
no
no
(DG)(DT)(DG)(DA)(DA)(DC)(DT)(DT)(DT)(DC)(DG)(DG)(DT)
GTGAACTTTCGGT
C
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
mouse
sample
Myt1, Kiaa0835, Nzf2
10090
Mus musculus
562
Escherichia coli
-0.308
1
20
B
1
C
26
-5.581
B_DA1:DT26_C
1
-1.830
0.219
0.017
-0.063
-1.209
1
19
B
2
C
25
-3.135
B_DC2:DG25_C
2
-1.300
0.207
0.016
-0.174
-1.673
1
19
B
3
C
24
-3.035
B_DC3:DG24_C
3
-0.354
0.166
0.018
-0.126
-1.559
1
19
B
4
C
23
-2.943
B_DG4:DC23_C
4
0.617
0.000
0.024
-0.074
-0.715
1
20
B
5
C
22
-5.287
B_DA5:DT22_C
5
1.420
0.250
0.015
-0.047
0.315
1
20
B
6
C
21
2.751
B_DA6:DT21_C
6
-0.930
0.316
-0.011
0.064
0.133
1
20
B
7
C
20
-4.230
B_DA7:DT20_C
7
1.751
-0.388
-0.113
-0.129
-0.956
1
19
B
8
C
19
-6.697
B_DG8:DC19_C
8
2.462
0.380
-0.112
-0.001
0.568
1
20
B
9
C
18
2.091
B_DT9:DA18_C
9
2.438
-0.333
-0.071
-0.167
-0.261
1
20
B
10
C
17
8.773
B_DT10:DA17_C
10
-0.242
-0.501
0.039
0.055
-1.130
1
19
B
11
C
16
0.071
B_DC11:DG16_C
11
1.439
-0.188
0.025
-0.247
0.096
1
20
B
12
C
15
-2.233
B_DA12:DT15_C
12
1.780
-0.141
0.043
-0.005
1.527
1
19
B
13
C
14
0.098
B_DC13:DG14_C
13
1.247
0.129
0.042
-0.067
3.370
36.755
B
B
1
2
-4.916
C
C
26
25
3.358
-3.096
0.034
-0.278
BB_DA1DC2:DG25DT26_CC
1
0.619
-0.982
36.624
-0.006
0.033
3.380
36.010
B
B
2
3
-4.955
C
C
25
24
3.371
-3.060
-0.019
-0.249
BB_DC2DC3:DG24DG25_CC
2
-0.069
0.112
35.884
0.047
0.020
3.396
34.336
B
B
3
4
-5.272
C
C
24
23
3.384
-3.109
-0.001
-0.288
BB_DC3DG4:DC23DG24_CC
3
-0.028
0.048
34.200
0.017
-0.003
3.374
36.918
B
B
4
5
-5.228
C
C
23
22
3.365
-3.307
-0.040
-0.253
BB_DG4DA5:DT22DC23_CC
4
-0.550
0.870
36.771
0.061
-0.014
3.429
35.877
B
B
5
6
-2.077
C
C
22
21
3.419
-1.279
0.337
-0.120
BB_DA5DA6:DT21DT22_CC
5
1.084
-1.761
35.839
-0.003
-0.385
3.808
36.047
B
B
6
7
-13.562
C
C
21
20
3.872
-8.321
-0.912
-0.186
BB_DA6DA7:DT20DT21_CC
6
0.338
-0.552
35.103
1.105
1.531
3.274
32.770
B
B
7
8
6.879
C
C
20
19
3.305
3.870
0.553
0.252
BB_DA7DG8:DC19DT20_CC
7
-1.958
3.481
32.489
-0.225
-1.320
4.096
33.798
B
B
8
9
-23.498
C
C
19
18
4.114
-13.299
1.126
-1.014
BB_DG8DT9:DA18DC19_CC
8
-2.508
4.431
31.043
1.077
-2.468
3.718
36.202
B
B
9
10
-8.708
C
C
18
17
3.672
-5.389
0.550
-0.402
BB_DT9DT10:DA17DA18_CC
9
2.294
-3.708
35.741
0.215
-0.519
3.413
38.428
B
B
10
11
-6.791
C
C
17
16
3.473
-4.460
-0.880
0.135
BB_DT10DC11:DG16DA17_CC
10
1.021
-1.555
38.165
0.792
1.471
3.393
35.255
B
B
11
12
-5.651
C
C
16
15
3.380
-3.418
-0.057
-0.290
BB_DC11DA12:DT15DG16_CC
11
-0.648
1.071
35.089
0.047
-0.006
3.365
36.780
B
B
12
13
-4.904
C
C
15
14
3.353
-3.091
0.036
-0.275
BB_DA12DC13:DG14DT15_CC
12
0.636
-1.010
36.649
-0.003
0.033
database_2
pdbx_database_status
pdbx_nmr_spectrometer
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Database references
Data collection
Database references
Derived calculations
Other
1
0
2013-11-06
1
1
2013-12-25
1
2
2023-06-14
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_nmr_data
_pdbx_nmr_spectrometer.model
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
HADDOCK STARTING STRUCTURE
BMRB
Y
RCSB
2013-10-08
REL
REL
REL
REL
ZN
ZINC ION
FOR DOCKING, THE STARTING DNA STRUCTURE WAS CREATED BY PROGRAM 3DNA AS IDEAL B-FORM DNA.
structures with the lowest energy
10
1
2D 1H-15N HSQC
2D 1H-15N HSQC
3D CBCA(CO)NH
3D HNCACB
3D HNCO
3D HN(CA)CO
2D 1H-1H NOESY
0.2-1.0
mM
[U-13C; U-15N]
0.2-1.0
mM
60
7.2
ambient
298
K
THE STARTING STRUCTURE OF THE PROTEIN WAS AN IN SILICO FUSION OF TWO MYT1 F5 ZINC FINGERS FROM PDB ENTRY 2JYD. THE STARTING DNA STRUCTURE WAS CREATED BY PROGRAM 3DNA AS IDEAL B-FORM DNA.
simulated annealing
1
lowest energy
0.2-1.0 mM [U-13C; U-15N] protein, 0.2-1.0 mM DNA, 90% H2O/10% D2O
90% H2O/10% D2O
Bonvin, A. et al.
refinement
HADDOCK
600
Bruker
AVANCE
Bruker Avance
800
Bruker
AVANCE
Bruker Avance
ZN
901
4
ZN
ZN
901
A
ZN
902
4
ZN
ZN
902
A
n
1
788
A
n
2
789
A
n
3
790
A
n
4
791
A
n
5
792
A
n
6
793
A
n
7
794
A
n
8
795
A
n
9
796
A
n
10
797
A
n
11
798
A
LEU
799
n
12
LEU
799
A
LEU
800
n
13
LEU
800
A
THR
801
n
14
THR
801
A
CYS
802
n
15
CYS
802
A
PRO
803
n
16
PRO
803
A
THR
804
n
17
THR
804
A
PRO
805
n
18
PRO
805
A
GLY
806
n
19
GLY
806
A
CYS
807
n
20
CYS
807
A
ASP
808
n
21
ASP
808
A
GLY
809
n
22
GLY
809
A
SER
810
n
23
SER
810
A
GLY
811
n
24
GLY
811
A
HIS
812
n
25
HIS
812
A
ILE
813
n
26
ILE
813
A
THR
814
n
27
THR
814
A
GLY
815
n
28
GLY
815
A
ASN
816
n
29
ASN
816
A
TYR
817
n
30
TYR
817
A
ALA
818
n
31
ALA
818
A
SER
819
n
32
SER
819
A
HIS
820
n
33
HIS
820
A
ARG
821
n
34
ARG
821
A
SER
822
n
35
SER
822
A
LEU
823
n
36
LEU
823
A
SER
824
n
37
SER
824
A
GLY
825
n
38
GLY
825
A
CYS
826
n
39
CYS
826
A
PRO
827
n
40
PRO
827
A
LEU
828
n
41
LEU
828
A
ALA
829
n
42
ALA
829
A
ASP
830
n
43
ASP
830
A
LYS
831
n
44
LYS
831
A
SER
832
n
45
SER
832
A
LEU
833
n
46
LEU
833
A
ARG
834
n
47
ARG
834
A
ASN
835
n
48
ASN
835
A
LEU
836
n
49
LEU
836
A
MET
837
n
50
MET
837
A
ALA
838
n
51
ALA
838
A
ALA
839
n
52
ALA
839
A
HIS
840
n
53
HIS
840
A
SER
841
n
54
SER
841
A
ALA
842
n
55
ALA
842
A
ASP
843
n
56
ASP
843
A
LEU
844
n
57
LEU
844
A
LYS
845
n
58
LYS
845
A
CYS
846
n
59
CYS
846
A
PRO
847
n
60
PRO
847
A
THR
848
n
61
THR
848
A
PRO
849
n
62
PRO
849
A
GLY
850
n
63
GLY
850
A
CYS
851
n
64
CYS
851
A
ASP
852
n
65
ASP
852
A
GLY
853
n
66
GLY
853
A
SER
854
n
67
SER
854
A
GLY
855
n
68
GLY
855
A
HIS
856
n
69
HIS
856
A
ILE
857
n
70
ILE
857
A
THR
858
n
71
THR
858
A
GLY
859
n
72
GLY
859
A
ASN
860
n
73
ASN
860
A
TYR
861
n
74
TYR
861
A
ALA
862
n
75
ALA
862
A
SER
863
n
76
SER
863
A
HIS
864
n
77
HIS
864
A
ARG
865
n
78
ARG
865
A
SER
866
n
79
SER
866
A
LEU
867
n
80
LEU
867
A
SER
868
n
81
SER
868
A
GLY
869
n
82
GLY
869
A
CYS
870
n
83
CYS
870
A
PRO
871
n
84
PRO
871
A
ARG
872
n
85
ARG
872
A
ALA
873
n
86
ALA
873
A
n
87
874
A
n
88
875
A
n
89
876
A
n
90
877
A
n
91
878
A
n
92
879
A
n
93
880
A
DA
1
n
1
DA
1
B
DC
2
n
2
DC
2
B
DC
3
n
3
DC
3
B
DG
4
n
4
DG
4
B
DA
5
n
5
DA
5
B
DA
6
n
6
DA
6
B
DA
7
n
7
DA
7
B
DG
8
n
8
DG
8
B
DT
9
n
9
DT
9
B
DT
10
n
10
DT
10
B
DC
11
n
11
DC
11
B
DA
12
n
12
DA
12
B
DC
13
n
13
DC
13
B
DG
14
n
1
DG
14
C
DT
15
n
2
DT
15
C
DG
16
n
3
DG
16
C
DA
17
n
4
DA
17
C
DA
18
n
5
DA
18
C
DC
19
n
6
DC
19
C
DT
20
n
7
DT
20
C
DT
21
n
8
DT
21
C
DT
22
n
9
DT
22
C
DC
23
n
10
DC
23
C
DG
24
n
11
DG
24
C
DG
25
n
12
DG
25
C
DT
26
n
13
DT
26
C
author_defined_assembly
3
trimeric
A
CYS
802
A
SG
CYS
15
1_555
A
ZN
901
D
ZN
ZN
1_555
A
CYS
807
A
SG
CYS
20
1_555
103.2
A
CYS
802
A
SG
CYS
15
1_555
A
ZN
901
D
ZN
ZN
1_555
A
HIS
820
A
NE2
HIS
33
1_555
80.9
A
CYS
807
A
SG
CYS
20
1_555
A
ZN
901
D
ZN
ZN
1_555
A
HIS
820
A
NE2
HIS
33
1_555
88.6
A
CYS
802
A
SG
CYS
15
1_555
A
ZN
901
D
ZN
ZN
1_555
A
CYS
826
A
SG
CYS
39
1_555
109.8
A
CYS
807
A
SG
CYS
20
1_555
A
ZN
901
D
ZN
ZN
1_555
A
CYS
826
A
SG
CYS
39
1_555
146.2
A
HIS
820
A
NE2
HIS
33
1_555
A
ZN
901
D
ZN
ZN
1_555
A
CYS
826
A
SG
CYS
39
1_555
89.7
A
CYS
846
A
SG
CYS
59
1_555
A
ZN
902
E
ZN
ZN
1_555
A
CYS
851
A
SG
CYS
64
1_555
88.9
A
CYS
846
A
SG
CYS
59
1_555
A
ZN
902
E
ZN
ZN
1_555
A
HIS
864
A
NE2
HIS
77
1_555
58.4
A
CYS
851
A
SG
CYS
64
1_555
A
ZN
902
E
ZN
ZN
1_555
A
HIS
864
A
NE2
HIS
77
1_555
66.8
A
CYS
846
A
SG
CYS
59
1_555
A
ZN
902
E
ZN
ZN
1_555
A
CYS
870
A
SG
CYS
83
1_555
107.1
A
CYS
851
A
SG
CYS
64
1_555
A
ZN
902
E
ZN
ZN
1_555
A
CYS
870
A
SG
CYS
83
1_555
93.5
A
HIS
864
A
NE2
HIS
77
1_555
A
ZN
902
E
ZN
ZN
1_555
A
CYS
870
A
SG
CYS
83
1_555
56.6
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
GLY
788
A
GLY
1
1
Y
1
A
PRO
789
A
PRO
2
1
Y
1
A
LEU
790
A
LEU
3
1
Y
1
A
GLY
791
A
GLY
4
1
Y
1
A
SER
792
A
SER
5
1
Y
1
A
PHE
793
A
PHE
6
1
Y
1
A
ASP
794
A
ASP
7
1
Y
1
A
ILE
795
A
ILE
8
1
Y
1
A
LYS
796
A
LYS
9
1
Y
1
A
LYS
797
A
LYS
10
1
Y
1
A
GLU
798
A
GLU
11
1
Y
1
A
LYS
874
A
LYS
87
1
Y
1
A
LYS
875
A
LYS
88
1
Y
1
A
SER
876
A
SER
89
1
Y
1
A
GLY
877
A
GLY
90
1
Y
1
A
LEU
878
A
LEU
91
1
Y
1
A
ARG
879
A
ARG
92
1
Y
1
A
VAL
880
A
VAL
93
1
Y
1
A
B
HE
H61
ARG
DA
821
7
1.16
1
B
B
H1'
H5'
DG
DT
8
9
1.25
1
A
C
HE
H61
ARG
DA
865
18
1.29
1
C
C
H2''
OP2
DG
DA
16
17
1.55
1
B
B
H2''
OP2
DG
DT
8
9
1.58
1
A
A
HB3
ZN
CYS
ZN
851
902
1.58
1
A
LEU
799
11.03
1
A
LEU
828
11.26
1
A
ALA
842
-17.92
1
A
A
C
N
LEU
MET
836
837
1.08
1
A
A
C
N
ALA
HIS
839
840
1.16
1
A
A
C
N
ALA
ASP
842
843
1.03
1
A
A
C
N
LEU
LYS
844
845
0.98
1
B
B
O3'
P
DA
DC
1
2
1.27
1
B
B
O3'
P
DA
DC
12
13
1.27
1
C
C
O3'
P
DT
DG
15
16
1.26
1
C
C
O3'
P
DT
DC
22
23
1.27
1
-12.73
2.10
120.10
107.37
A
A
A
CA
C
O
LEU
LEU
LEU
836
836
836
N
1
-18.12
2.10
120.10
101.98
A
A
A
CA
C
O
ALA
ALA
ALA
842
842
842
N
1
-20.97
1.20
119.70
98.73
B
B
B
C3'
O3'
P
DA
DA
DC
1
1
2
Y
1
29.54
1.10
110.50
140.04
B
B
B
O3'
P
OP2
DA
DC
DC
1
2
2
Y
1
-39.70
2.20
105.20
65.50
B
B
B
O3'
P
OP1
DA
DC
DC
1
2
2
Y
1
-18.96
1.20
119.70
100.74
B
B
B
C3'
O3'
P
DC
DC
DC
2
2
3
Y
1
24.41
1.10
110.50
134.91
B
B
B
O3'
P
OP2
DC
DC
DC
2
3
3
Y
1
-39.28
2.20
105.20
65.92
B
B
B
O3'
P
OP1
DC
DC
DC
2
3
3
Y
1
-18.17
1.20
119.70
101.53
B
B
B
C3'
O3'
P
DC
DC
DG
3
3
4
Y
1
23.92
1.10
110.50
134.42
B
B
B
O3'
P
OP2
DC
DG
DG
3
4
4
Y
1
-38.74
2.20
105.20
66.46
B
B
B
O3'
P
OP1
DC
DG
DG
3
4
4
Y
1
-10.31
1.20
119.70
109.39
B
B
B
C3'
O3'
P
DG
DG
DA
4
4
5
Y
1
15.25
1.10
110.50
125.75
B
B
B
O3'
P
OP2
DG
DA
DA
4
5
5
Y
1
-27.43
2.20
105.20
77.77
B
B
B
O3'
P
OP1
DG
DA
DA
4
5
5
Y
1
1.91
0.30
108.30
110.21
B
B
B
O4'
C1'
N9
DG
DG
DG
8
8
8
N
1
13.69
1.10
110.50
124.19
B
B
B
O3'
P
OP2
DT
DC
DC
10
11
11
Y
1
-20.81
2.20
105.20
84.39
B
B
B
O3'
P
OP1
DT
DC
DC
10
11
11
Y
1
-9.39
1.20
119.70
110.31
B
B
B
C3'
O3'
P
DC
DC
DA
11
11
12
Y
1
14.37
1.10
110.50
124.87
B
B
B
O3'
P
OP2
DC
DA
DA
11
12
12
Y
1
-27.20
2.20
105.20
78.00
B
B
B
O3'
P
OP1
DC
DA
DA
11
12
12
Y
1
-20.84
1.20
119.70
98.86
B
B
B
C3'
O3'
P
DA
DA
DC
12
12
13
Y
1
29.42
1.10
110.50
139.92
B
B
B
O3'
P
OP2
DA
DC
DC
12
13
13
Y
1
-39.74
2.20
105.20
65.46
B
B
B
O3'
P
OP1
DA
DC
DC
12
13
13
Y
1
-11.04
1.20
119.70
108.66
C
C
C
C3'
O3'
P
DG
DG
DT
14
14
15
Y
1
15.30
1.10
110.50
125.80
C
C
C
O3'
P
OP2
DG
DT
DT
14
15
15
Y
1
-28.90
2.20
105.20
76.30
C
C
C
O3'
P
OP1
DG
DT
DT
14
15
15
Y
1
-18.61
1.20
119.70
101.09
C
C
C
C3'
O3'
P
DT
DT
DG
15
15
16
Y
1
27.84
1.10
110.50
138.34
C
C
C
O3'
P
OP2
DT
DG
DG
15
16
16
Y
1
-39.01
2.20
105.20
66.19
C
C
C
O3'
P
OP1
DT
DG
DG
15
16
16
Y
1
11.09
1.10
110.50
121.59
C
C
C
O3'
P
OP2
DT
DT
DT
21
22
22
Y
1
-18.66
2.20
105.20
86.54
C
C
C
O3'
P
OP1
DT
DT
DT
21
22
22
Y
1
-19.68
1.20
119.70
100.02
C
C
C
C3'
O3'
P
DT
DT
DC
22
22
23
Y
1
28.53
1.10
110.50
139.03
C
C
C
O3'
P
OP2
DT
DC
DC
22
23
23
Y
1
-39.73
2.20
105.20
65.47
C
C
C
O3'
P
OP1
DT
DC
DC
22
23
23
Y
1
-18.15
1.20
119.70
101.55
C
C
C
C3'
O3'
P
DC
DC
DG
23
23
24
Y
1
23.95
1.10
110.50
134.45
C
C
C
O3'
P
OP2
DC
DG
DG
23
24
24
Y
1
-38.61
2.20
105.20
66.59
C
C
C
O3'
P
OP1
DC
DG
DG
23
24
24
Y
1
-18.75
1.20
119.70
100.95
C
C
C
C3'
O3'
P
DG
DG
DG
24
24
25
Y
1
24.80
1.10
110.50
135.30
C
C
C
O3'
P
OP2
DG
DG
DG
24
25
25
Y
1
-38.82
2.20
105.20
66.38
C
C
C
O3'
P
OP1
DG
DG
DG
24
25
25
Y
1
-11.04
1.20
119.70
108.66
C
C
C
C3'
O3'
P
DG
DG
DT
25
25
26
Y
1
15.29
1.10
110.50
125.79
C
C
C
O3'
P
OP2
DG
DT
DT
25
26
26
Y
1
-29.00
2.20
105.20
76.20
C
C
C
O3'
P
OP1
DG
DT
DT
25
26
26
Y
1
A
A
CG
CD1
LEU
LEU
828
828
0.419
0.037
1.514
1.933
N
1
A
A
CG
CD2
LEU
LEU
828
828
0.338
0.037
1.514
1.852
N
1
A
A
CA
CB
ALA
ALA
829
829
0.162
0.021
1.520
1.682
N
1
A
A
CA
CB
LYS
LYS
831
831
0.139
0.022
1.535
1.674
N
1
A
A
CB
CG
LYS
LYS
831
831
0.238
0.027
1.521
1.759
N
1
A
A
CD
CE
LYS
LYS
831
831
0.353
0.025
1.508
1.861
N
1
A
A
CA
CB
SER
SER
832
832
0.092
0.015
1.525
1.617
N
1
A
A
CG
CD1
LEU
LEU
833
833
0.318
0.037
1.514
1.832
N
1
A
A
C
O
LEU
LEU
833
833
0.170
0.019
1.229
1.399
N
1
A
A
CB
CG
ARG
ARG
834
834
0.339
0.027
1.521
1.860
N
1
A
A
NE
CZ
ARG
ARG
834
834
-0.080
0.013
1.326
1.246
N
1
A
A
C
O
ASN
ASN
835
835
-0.149
0.019
1.229
1.080
N
1
A
A
CG
CD2
LEU
LEU
836
836
0.313
0.037
1.514
1.827
N
1
A
A
C
O
LEU
LEU
836
836
0.129
0.019
1.229
1.358
N
1
A
A
C
N
LEU
MET
836
837
-0.254
0.023
1.336
1.082
Y
1
A
A
CA
CB
ALA
ALA
838
838
0.164
0.021
1.520
1.684
N
1
A
A
CA
CB
ALA
ALA
839
839
0.171
0.021
1.520
1.691
N
1
A
A
C
N
ALA
HIS
839
840
-0.173
0.023
1.336
1.163
Y
1
A
A
CA
CB
SER
SER
841
841
0.182
0.015
1.525
1.707
N
1
A
A
C
O
ALA
ALA
842
842
0.196
0.019
1.229
1.425
N
1
A
A
C
N
ALA
ASP
842
843
-0.301
0.023
1.336
1.035
Y
1
A
A
CA
CB
LEU
LEU
844
844
0.175
0.023
1.533
1.708
N
1
A
A
C
N
LEU
LYS
844
845
-0.352
0.023
1.336
0.984
Y
1
A
A
CB
CG
ARG
ARG
872
872
0.293
0.027
1.521
1.814
N
1
A
A
CG
CD
ARG
ARG
872
872
0.178
0.025
1.515
1.693
N
1
A
A
CD
NE
ARG
ARG
872
872
-0.161
0.017
1.460
1.299
N
1
A
A
NE
CZ
ARG
ARG
872
872
-0.106
0.013
1.326
1.220
N
1
A
A
C
O
ARG
ARG
872
872
-0.176
0.019
1.229
1.053
N
1
A
A
CA
CB
ALA
ALA
873
873
0.166
0.021
1.520
1.686
N
1
A
A
C
O
ALA
ALA
873
873
-0.138
0.019
1.229
1.091
N
1
B
B
O3'
P
DA
DC
1
2
-0.334
0.012
1.607
1.273
Y
1
B
B
O3'
P
DC
DC
2
3
-0.149
0.012
1.607
1.458
Y
1
B
B
O3'
P
DC
DG
3
4
-0.154
0.012
1.607
1.453
Y
1
B
B
O3'
P
DG
DA
4
5
-0.093
0.012
1.607
1.514
Y
1
B
B
O3'
P
DC
DA
11
12
-0.103
0.012
1.607
1.504
Y
1
B
B
O3'
P
DA
DC
12
13
-0.336
0.012
1.607
1.271
Y
1
C
C
O3'
P
DG
DT
14
15
-0.139
0.012
1.607
1.468
Y
1
C
C
O3'
P
DT
DG
15
16
-0.342
0.012
1.607
1.265
Y
1
C
C
O3'
C3'
DT
DT
21
21
-0.059
0.006
1.419
1.360
N
1
C
C
O3'
P
DT
DC
22
23
-0.334
0.012
1.607
1.273
Y
1
C
C
O3'
P
DC
DG
23
24
-0.153
0.012
1.607
1.454
Y
1
C
C
O3'
P
DG
DG
24
25
-0.141
0.012
1.607
1.466
Y
1
C
C
O3'
P
DG
DT
25
26
-0.138
0.012
1.607
1.469
Y
1
A
ALA
818
-141.77
-40.48
1
A
SER
822
-142.22
-132.88
1
A
SER
824
-104.55
-79.42
1
A
LEU
828
-72.51
-76.80
1
A
ASP
830
63.62
-168.53
1
A
LYS
831
-143.56
15.44
1
A
SER
832
71.76
99.68
1
A
LEU
833
-168.50
90.95
1
A
ARG
834
-142.40
-87.14
1
A
ASN
835
45.22
-124.90
1
A
LEU
836
-107.71
40.48
1
A
LYS
845
-106.83
-162.72
1
A
ALA
862
-140.60
-37.03
1
A
SER
866
-147.55
-128.06
1
A
LEU
867
-90.06
55.30
1
A
SER
868
-106.84
-77.05
1
A
PRO
871
-82.92
43.02
1
A
ARG
872
176.09
-173.29
HADDOCK model of MyT1 F4F5 - DNA complex
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
metalc
2.548
A
CYS
802
A
SG
CYS
15
1_555
A
ZN
901
D
ZN
ZN
1_555
metalc
1.944
A
CYS
807
A
SG
CYS
20
1_555
A
ZN
901
D
ZN
ZN
1_555
metalc
2.220
A
HIS
820
A
NE2
HIS
33
1_555
A
ZN
901
D
ZN
ZN
1_555
metalc
1.907
A
CYS
826
A
SG
CYS
39
1_555
A
ZN
901
D
ZN
ZN
1_555
metalc
1.956
A
CYS
846
A
SG
CYS
59
1_555
A
ZN
902
E
ZN
ZN
1_555
metalc
2.383
A
CYS
851
A
SG
CYS
64
1_555
A
ZN
902
E
ZN
ZN
1_555
metalc
2.639
A
HIS
864
A
NE2
HIS
77
1_555
A
ZN
902
E
ZN
ZN
1_555
metalc
1.976
A
CYS
870
A
SG
CYS
83
1_555
A
ZN
902
E
ZN
ZN
1_555
hydrog
WATSON-CRICK
B
DA
1
B
N1
DA
1
1_555
C
DT
26
C
N3
DT
13
1_555
hydrog
WATSON-CRICK
B
DA
1
B
N6
DA
1
1_555
C
DT
26
C
O4
DT
13
1_555
hydrog
WATSON-CRICK
B
DC
2
B
N3
DC
2
1_555
C
DG
25
C
N1
DG
12
1_555
hydrog
WATSON-CRICK
B
DC
2
B
N4
DC
2
1_555
C
DG
25
C
O6
DG
12
1_555
hydrog
WATSON-CRICK
B
DC
2
B
O2
DC
2
1_555
C
DG
25
C
N2
DG
12
1_555
hydrog
WATSON-CRICK
B
DC
3
B
N3
DC
3
1_555
C
DG
24
C
N1
DG
11
1_555
hydrog
WATSON-CRICK
B
DC
3
B
N4
DC
3
1_555
C
DG
24
C
O6
DG
11
1_555
hydrog
WATSON-CRICK
B
DC
3
B
O2
DC
3
1_555
C
DG
24
C
N2
DG
11
1_555
hydrog
WATSON-CRICK
B
DG
4
B
N1
DG
4
1_555
C
DC
23
C
N3
DC
10
1_555
hydrog
WATSON-CRICK
B
DG
4
B
N2
DG
4
1_555
C
DC
23
C
O2
DC
10
1_555
hydrog
WATSON-CRICK
B
DG
4
B
O6
DG
4
1_555
C
DC
23
C
N4
DC
10
1_555
hydrog
WATSON-CRICK
B
DA
5
B
N1
DA
5
1_555
C
DT
22
C
N3
DT
9
1_555
hydrog
WATSON-CRICK
B
DA
5
B
N6
DA
5
1_555
C
DT
22
C
O4
DT
9
1_555
hydrog
WATSON-CRICK
B
DA
6
B
N1
DA
6
1_555
C
DT
21
C
N3
DT
8
1_555
hydrog
WATSON-CRICK
B
DA
6
B
N6
DA
6
1_555
C
DT
21
C
O4
DT
8
1_555
hydrog
WATSON-CRICK
B
DA
7
B
N1
DA
7
1_555
C
DT
20
C
N3
DT
7
1_555
hydrog
WATSON-CRICK
B
DA
7
B
N6
DA
7
1_555
C
DT
20
C
O4
DT
7
1_555
hydrog
WATSON-CRICK
B
DG
8
B
N1
DG
8
1_555
C
DC
19
C
N3
DC
6
1_555
hydrog
WATSON-CRICK
B
DG
8
B
N2
DG
8
1_555
C
DC
19
C
O2
DC
6
1_555
hydrog
WATSON-CRICK
B
DG
8
B
O6
DG
8
1_555
C
DC
19
C
N4
DC
6
1_555
hydrog
WATSON-CRICK
B
DT
9
B
N3
DT
9
1_555
C
DA
18
C
N1
DA
5
1_555
hydrog
WATSON-CRICK
B
DT
9
B
O4
DT
9
1_555
C
DA
18
C
N6
DA
5
1_555
hydrog
WATSON-CRICK
B
DT
10
B
N3
DT
10
1_555
C
DA
17
C
N1
DA
4
1_555
hydrog
WATSON-CRICK
B
DT
10
B
O4
DT
10
1_555
C
DA
17
C
N6
DA
4
1_555
hydrog
WATSON-CRICK
B
DC
11
B
N3
DC
11
1_555
C
DG
16
C
N1
DG
3
1_555
hydrog
WATSON-CRICK
B
DC
11
B
N4
DC
11
1_555
C
DG
16
C
O6
DG
3
1_555
hydrog
WATSON-CRICK
B
DC
11
B
O2
DC
11
1_555
C
DG
16
C
N2
DG
3
1_555
hydrog
WATSON-CRICK
B
DA
12
B
N1
DA
12
1_555
C
DT
15
C
N3
DT
2
1_555
hydrog
WATSON-CRICK
B
DA
12
B
N6
DA
12
1_555
C
DT
15
C
O4
DT
2
1_555
hydrog
WATSON-CRICK
B
DC
13
B
N3
DC
13
1_555
C
DG
14
C
N1
DG
1
1_555
hydrog
WATSON-CRICK
B
DC
13
B
N4
DC
13
1_555
C
DG
14
C
O6
DG
1
1_555
hydrog
WATSON-CRICK
B
DC
13
B
O2
DC
13
1_555
C
DG
14
C
N2
DG
1
1_555
METAL BINDING PROTEIN/DNA
MyT1, zinc finger, METAL BINDING PROTEIN-DNA complex
MYT1_MOUSE
UNP
1
792
Q8CFC2
SKDIKKELLTCPTPGCDGSGHITGNYASHRSLSGCPLADKSLRNLMAAHSADLKCPTPGCDGSGHITGNYASHRSLSGCP
RAKKSGLKV
2MF8
PDB
2
2MF8
2MF8
PDB
3
2MF8
792
880
2MF8
792
880
Q8CFC2
A
1
5
93
1
13
2MF8
1
13
2MF8
B
2
1
13
14
26
2MF8
14
26
2MF8
C
3
1
13
1
expression tag
GLY
788
2MF8
A
Q8CFC2
UNP
1
1
expression tag
PRO
789
2MF8
A
Q8CFC2
UNP
2
1
expression tag
LEU
790
2MF8
A
Q8CFC2
UNP
3
1
expression tag
GLY
791
2MF8
A
Q8CFC2
UNP
4
1
LYS
conflict
PHE
793
2MF8
A
Q8CFC2
UNP
793
6
1
LYS
conflict
ARG
879
2MF8
A
Q8CFC2
UNP
879
92
BINDING SITE FOR RESIDUE ZN A 901
A
ZN
901
Software
5
BINDING SITE FOR RESIDUE ZN A 902
A
ZN
902
Software
5
A
CYS
802
A
CYS
15
5
1_555
A
THR
804
A
THR
17
5
1_555
A
CYS
807
A
CYS
20
5
1_555
A
HIS
820
A
HIS
33
5
1_555
A
CYS
826
A
CYS
39
5
1_555
A
CYS
846
A
CYS
59
5
1_555
A
THR
848
A
THR
61
5
1_555
A
CYS
851
A
CYS
64
5
1_555
A
HIS
864
A
HIS
77
5
1_555
A
CYS
870
A
CYS
83
5
1_555