1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Gamsjaeger, R. O'Connell, M.R. Cubeddu, L. Shepherd, N.E. Lowry, J.A. Kwan, A.H. Vandevenne, M. Swanton, M.K. Matthews, J.M. Mackay, J.P. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer US J.Biol.Chem. JBCHA3 0071 0021-9258 288 35180 35191 10.1074/jbc.M113.482075 24097990 A structural analysis of DNA binding by myelin transcription factor 1 double zinc fingers. 2013 10.2210/pdb2mf8/pdb pdb_00002mf8 SEVERAL C-N OR O3'-P BONDS LIE OUTSIDE OF THE ACCEPTED RANGE. MANY VALUES OF COVALENT BOND LENGTH AND ANGLE DEVIATE SIGNIFICANTLY FROM STANDARD VALUES. 9579.887 Myelin transcription factor 1 UNP residues 792-880 1 man polymer 3944.601 DNA (5'-D(*AP*CP*CP*GP*AP*AP*AP*GP*TP*TP*CP*AP*C)-3') 1 syn polymer 3997.607 DNA (5'-D(*GP*TP*GP*AP*AP*CP*TP*TP*TP*CP*GP*GP*T)-3') 1 syn polymer 65.409 ZINC ION 2 syn non-polymer MyT1, Neural zinc finger factor 2, NZF-2 no no GPLGSFDIKKELLTCPTPGCDGSGHITGNYASHRSLSGCPLADKSLRNLMAAHSADLKCPTPGCDGSGHITGNYASHRSL SGCPRAKKSGLRV GPLGSFDIKKELLTCPTPGCDGSGHITGNYASHRSLSGCPLADKSLRNLMAAHSADLKCPTPGCDGSGHITGNYASHRSL SGCPRAKKSGLRV A polypeptide(L) no no (DA)(DC)(DC)(DG)(DA)(DA)(DA)(DG)(DT)(DT)(DC)(DA)(DC) ACCGAAAGTTCAC B polydeoxyribonucleotide no no (DG)(DT)(DG)(DA)(DA)(DC)(DT)(DT)(DT)(DC)(DG)(DG)(DT) GTGAACTTTCGGT C polydeoxyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n mouse sample Myt1, Kiaa0835, Nzf2 10090 Mus musculus 562 Escherichia coli -0.308 1 20 B 1 C 26 -5.581 B_DA1:DT26_C 1 -1.830 0.219 0.017 -0.063 -1.209 1 19 B 2 C 25 -3.135 B_DC2:DG25_C 2 -1.300 0.207 0.016 -0.174 -1.673 1 19 B 3 C 24 -3.035 B_DC3:DG24_C 3 -0.354 0.166 0.018 -0.126 -1.559 1 19 B 4 C 23 -2.943 B_DG4:DC23_C 4 0.617 0.000 0.024 -0.074 -0.715 1 20 B 5 C 22 -5.287 B_DA5:DT22_C 5 1.420 0.250 0.015 -0.047 0.315 1 20 B 6 C 21 2.751 B_DA6:DT21_C 6 -0.930 0.316 -0.011 0.064 0.133 1 20 B 7 C 20 -4.230 B_DA7:DT20_C 7 1.751 -0.388 -0.113 -0.129 -0.956 1 19 B 8 C 19 -6.697 B_DG8:DC19_C 8 2.462 0.380 -0.112 -0.001 0.568 1 20 B 9 C 18 2.091 B_DT9:DA18_C 9 2.438 -0.333 -0.071 -0.167 -0.261 1 20 B 10 C 17 8.773 B_DT10:DA17_C 10 -0.242 -0.501 0.039 0.055 -1.130 1 19 B 11 C 16 0.071 B_DC11:DG16_C 11 1.439 -0.188 0.025 -0.247 0.096 1 20 B 12 C 15 -2.233 B_DA12:DT15_C 12 1.780 -0.141 0.043 -0.005 1.527 1 19 B 13 C 14 0.098 B_DC13:DG14_C 13 1.247 0.129 0.042 -0.067 3.370 36.755 B B 1 2 -4.916 C C 26 25 3.358 -3.096 0.034 -0.278 BB_DA1DC2:DG25DT26_CC 1 0.619 -0.982 36.624 -0.006 0.033 3.380 36.010 B B 2 3 -4.955 C C 25 24 3.371 -3.060 -0.019 -0.249 BB_DC2DC3:DG24DG25_CC 2 -0.069 0.112 35.884 0.047 0.020 3.396 34.336 B B 3 4 -5.272 C C 24 23 3.384 -3.109 -0.001 -0.288 BB_DC3DG4:DC23DG24_CC 3 -0.028 0.048 34.200 0.017 -0.003 3.374 36.918 B B 4 5 -5.228 C C 23 22 3.365 -3.307 -0.040 -0.253 BB_DG4DA5:DT22DC23_CC 4 -0.550 0.870 36.771 0.061 -0.014 3.429 35.877 B B 5 6 -2.077 C C 22 21 3.419 -1.279 0.337 -0.120 BB_DA5DA6:DT21DT22_CC 5 1.084 -1.761 35.839 -0.003 -0.385 3.808 36.047 B B 6 7 -13.562 C C 21 20 3.872 -8.321 -0.912 -0.186 BB_DA6DA7:DT20DT21_CC 6 0.338 -0.552 35.103 1.105 1.531 3.274 32.770 B B 7 8 6.879 C C 20 19 3.305 3.870 0.553 0.252 BB_DA7DG8:DC19DT20_CC 7 -1.958 3.481 32.489 -0.225 -1.320 4.096 33.798 B B 8 9 -23.498 C C 19 18 4.114 -13.299 1.126 -1.014 BB_DG8DT9:DA18DC19_CC 8 -2.508 4.431 31.043 1.077 -2.468 3.718 36.202 B B 9 10 -8.708 C C 18 17 3.672 -5.389 0.550 -0.402 BB_DT9DT10:DA17DA18_CC 9 2.294 -3.708 35.741 0.215 -0.519 3.413 38.428 B B 10 11 -6.791 C C 17 16 3.473 -4.460 -0.880 0.135 BB_DT10DC11:DG16DA17_CC 10 1.021 -1.555 38.165 0.792 1.471 3.393 35.255 B B 11 12 -5.651 C C 16 15 3.380 -3.418 -0.057 -0.290 BB_DC11DA12:DT15DG16_CC 11 -0.648 1.071 35.089 0.047 -0.006 3.365 36.780 B B 12 13 -4.904 C C 15 14 3.353 -3.091 0.036 -0.275 BB_DA12DC13:DG14DT15_CC 12 0.636 -1.010 36.649 -0.003 0.033 database_2 pdbx_database_status pdbx_nmr_spectrometer pdbx_struct_conn_angle struct_conn struct_ref_seq_dif struct_site repository Initial release Database references Data collection Database references Derived calculations Other 1 0 2013-11-06 1 1 2013-12-25 1 2 2023-06-14 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.status_code_nmr_data _pdbx_nmr_spectrometer.model _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id HADDOCK STARTING STRUCTURE BMRB Y RCSB 2013-10-08 REL REL REL REL ZN ZINC ION FOR DOCKING, THE STARTING DNA STRUCTURE WAS CREATED BY PROGRAM 3DNA AS IDEAL B-FORM DNA. structures with the lowest energy 10 1 2D 1H-15N HSQC 2D 1H-15N HSQC 3D CBCA(CO)NH 3D HNCACB 3D HNCO 3D HN(CA)CO 2D 1H-1H NOESY 0.2-1.0 mM [U-13C; U-15N] 0.2-1.0 mM 60 7.2 ambient 298 K THE STARTING STRUCTURE OF THE PROTEIN WAS AN IN SILICO FUSION OF TWO MYT1 F5 ZINC FINGERS FROM PDB ENTRY 2JYD. THE STARTING DNA STRUCTURE WAS CREATED BY PROGRAM 3DNA AS IDEAL B-FORM DNA. simulated annealing 1 lowest energy 0.2-1.0 mM [U-13C; U-15N] protein, 0.2-1.0 mM DNA, 90% H2O/10% D2O 90% H2O/10% D2O Bonvin, A. et al. refinement HADDOCK 600 Bruker AVANCE Bruker Avance 800 Bruker AVANCE Bruker Avance ZN 901 4 ZN ZN 901 A ZN 902 4 ZN ZN 902 A n 1 788 A n 2 789 A n 3 790 A n 4 791 A n 5 792 A n 6 793 A n 7 794 A n 8 795 A n 9 796 A n 10 797 A n 11 798 A LEU 799 n 12 LEU 799 A LEU 800 n 13 LEU 800 A THR 801 n 14 THR 801 A CYS 802 n 15 CYS 802 A PRO 803 n 16 PRO 803 A THR 804 n 17 THR 804 A PRO 805 n 18 PRO 805 A GLY 806 n 19 GLY 806 A CYS 807 n 20 CYS 807 A ASP 808 n 21 ASP 808 A GLY 809 n 22 GLY 809 A SER 810 n 23 SER 810 A GLY 811 n 24 GLY 811 A HIS 812 n 25 HIS 812 A ILE 813 n 26 ILE 813 A THR 814 n 27 THR 814 A GLY 815 n 28 GLY 815 A ASN 816 n 29 ASN 816 A TYR 817 n 30 TYR 817 A ALA 818 n 31 ALA 818 A SER 819 n 32 SER 819 A HIS 820 n 33 HIS 820 A ARG 821 n 34 ARG 821 A SER 822 n 35 SER 822 A LEU 823 n 36 LEU 823 A SER 824 n 37 SER 824 A GLY 825 n 38 GLY 825 A CYS 826 n 39 CYS 826 A PRO 827 n 40 PRO 827 A LEU 828 n 41 LEU 828 A ALA 829 n 42 ALA 829 A ASP 830 n 43 ASP 830 A LYS 831 n 44 LYS 831 A SER 832 n 45 SER 832 A LEU 833 n 46 LEU 833 A ARG 834 n 47 ARG 834 A ASN 835 n 48 ASN 835 A LEU 836 n 49 LEU 836 A MET 837 n 50 MET 837 A ALA 838 n 51 ALA 838 A ALA 839 n 52 ALA 839 A HIS 840 n 53 HIS 840 A SER 841 n 54 SER 841 A ALA 842 n 55 ALA 842 A ASP 843 n 56 ASP 843 A LEU 844 n 57 LEU 844 A LYS 845 n 58 LYS 845 A CYS 846 n 59 CYS 846 A PRO 847 n 60 PRO 847 A THR 848 n 61 THR 848 A PRO 849 n 62 PRO 849 A GLY 850 n 63 GLY 850 A CYS 851 n 64 CYS 851 A ASP 852 n 65 ASP 852 A GLY 853 n 66 GLY 853 A SER 854 n 67 SER 854 A GLY 855 n 68 GLY 855 A HIS 856 n 69 HIS 856 A ILE 857 n 70 ILE 857 A THR 858 n 71 THR 858 A GLY 859 n 72 GLY 859 A ASN 860 n 73 ASN 860 A TYR 861 n 74 TYR 861 A ALA 862 n 75 ALA 862 A SER 863 n 76 SER 863 A HIS 864 n 77 HIS 864 A ARG 865 n 78 ARG 865 A SER 866 n 79 SER 866 A LEU 867 n 80 LEU 867 A SER 868 n 81 SER 868 A GLY 869 n 82 GLY 869 A CYS 870 n 83 CYS 870 A PRO 871 n 84 PRO 871 A ARG 872 n 85 ARG 872 A ALA 873 n 86 ALA 873 A n 87 874 A n 88 875 A n 89 876 A n 90 877 A n 91 878 A n 92 879 A n 93 880 A DA 1 n 1 DA 1 B DC 2 n 2 DC 2 B DC 3 n 3 DC 3 B DG 4 n 4 DG 4 B DA 5 n 5 DA 5 B DA 6 n 6 DA 6 B DA 7 n 7 DA 7 B DG 8 n 8 DG 8 B DT 9 n 9 DT 9 B DT 10 n 10 DT 10 B DC 11 n 11 DC 11 B DA 12 n 12 DA 12 B DC 13 n 13 DC 13 B DG 14 n 1 DG 14 C DT 15 n 2 DT 15 C DG 16 n 3 DG 16 C DA 17 n 4 DA 17 C DA 18 n 5 DA 18 C DC 19 n 6 DC 19 C DT 20 n 7 DT 20 C DT 21 n 8 DT 21 C DT 22 n 9 DT 22 C DC 23 n 10 DC 23 C DG 24 n 11 DG 24 C DG 25 n 12 DG 25 C DT 26 n 13 DT 26 C author_defined_assembly 3 trimeric A CYS 802 A SG CYS 15 1_555 A ZN 901 D ZN ZN 1_555 A CYS 807 A SG CYS 20 1_555 103.2 A CYS 802 A SG CYS 15 1_555 A ZN 901 D ZN ZN 1_555 A HIS 820 A NE2 HIS 33 1_555 80.9 A CYS 807 A SG CYS 20 1_555 A ZN 901 D ZN ZN 1_555 A HIS 820 A NE2 HIS 33 1_555 88.6 A CYS 802 A SG CYS 15 1_555 A ZN 901 D ZN ZN 1_555 A CYS 826 A SG CYS 39 1_555 109.8 A CYS 807 A SG CYS 20 1_555 A ZN 901 D ZN ZN 1_555 A CYS 826 A SG CYS 39 1_555 146.2 A HIS 820 A NE2 HIS 33 1_555 A ZN 901 D ZN ZN 1_555 A CYS 826 A SG CYS 39 1_555 89.7 A CYS 846 A SG CYS 59 1_555 A ZN 902 E ZN ZN 1_555 A CYS 851 A SG CYS 64 1_555 88.9 A CYS 846 A SG CYS 59 1_555 A ZN 902 E ZN ZN 1_555 A HIS 864 A NE2 HIS 77 1_555 58.4 A CYS 851 A SG CYS 64 1_555 A ZN 902 E ZN ZN 1_555 A HIS 864 A NE2 HIS 77 1_555 66.8 A CYS 846 A SG CYS 59 1_555 A ZN 902 E ZN ZN 1_555 A CYS 870 A SG CYS 83 1_555 107.1 A CYS 851 A SG CYS 64 1_555 A ZN 902 E ZN ZN 1_555 A CYS 870 A SG CYS 83 1_555 93.5 A HIS 864 A NE2 HIS 77 1_555 A ZN 902 E ZN ZN 1_555 A CYS 870 A SG CYS 83 1_555 56.6 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A GLY 788 A GLY 1 1 Y 1 A PRO 789 A PRO 2 1 Y 1 A LEU 790 A LEU 3 1 Y 1 A GLY 791 A GLY 4 1 Y 1 A SER 792 A SER 5 1 Y 1 A PHE 793 A PHE 6 1 Y 1 A ASP 794 A ASP 7 1 Y 1 A ILE 795 A ILE 8 1 Y 1 A LYS 796 A LYS 9 1 Y 1 A LYS 797 A LYS 10 1 Y 1 A GLU 798 A GLU 11 1 Y 1 A LYS 874 A LYS 87 1 Y 1 A LYS 875 A LYS 88 1 Y 1 A SER 876 A SER 89 1 Y 1 A GLY 877 A GLY 90 1 Y 1 A LEU 878 A LEU 91 1 Y 1 A ARG 879 A ARG 92 1 Y 1 A VAL 880 A VAL 93 1 Y 1 A B HE H61 ARG DA 821 7 1.16 1 B B H1' H5' DG DT 8 9 1.25 1 A C HE H61 ARG DA 865 18 1.29 1 C C H2'' OP2 DG DA 16 17 1.55 1 B B H2'' OP2 DG DT 8 9 1.58 1 A A HB3 ZN CYS ZN 851 902 1.58 1 A LEU 799 11.03 1 A LEU 828 11.26 1 A ALA 842 -17.92 1 A A C N LEU MET 836 837 1.08 1 A A C N ALA HIS 839 840 1.16 1 A A C N ALA ASP 842 843 1.03 1 A A C N LEU LYS 844 845 0.98 1 B B O3' P DA DC 1 2 1.27 1 B B O3' P DA DC 12 13 1.27 1 C C O3' P DT DG 15 16 1.26 1 C C O3' P DT DC 22 23 1.27 1 -12.73 2.10 120.10 107.37 A A A CA C O LEU LEU LEU 836 836 836 N 1 -18.12 2.10 120.10 101.98 A A A CA C O ALA ALA ALA 842 842 842 N 1 -20.97 1.20 119.70 98.73 B B B C3' O3' P DA DA DC 1 1 2 Y 1 29.54 1.10 110.50 140.04 B B B O3' P OP2 DA DC DC 1 2 2 Y 1 -39.70 2.20 105.20 65.50 B B B O3' P OP1 DA DC DC 1 2 2 Y 1 -18.96 1.20 119.70 100.74 B B B C3' O3' P DC DC DC 2 2 3 Y 1 24.41 1.10 110.50 134.91 B B B O3' P OP2 DC DC DC 2 3 3 Y 1 -39.28 2.20 105.20 65.92 B B B O3' P OP1 DC DC DC 2 3 3 Y 1 -18.17 1.20 119.70 101.53 B B B C3' O3' P DC DC DG 3 3 4 Y 1 23.92 1.10 110.50 134.42 B B B O3' P OP2 DC DG DG 3 4 4 Y 1 -38.74 2.20 105.20 66.46 B B B O3' P OP1 DC DG DG 3 4 4 Y 1 -10.31 1.20 119.70 109.39 B B B C3' O3' P DG DG DA 4 4 5 Y 1 15.25 1.10 110.50 125.75 B B B O3' P OP2 DG DA DA 4 5 5 Y 1 -27.43 2.20 105.20 77.77 B B B O3' P OP1 DG DA DA 4 5 5 Y 1 1.91 0.30 108.30 110.21 B B B O4' C1' N9 DG DG DG 8 8 8 N 1 13.69 1.10 110.50 124.19 B B B O3' P OP2 DT DC DC 10 11 11 Y 1 -20.81 2.20 105.20 84.39 B B B O3' P OP1 DT DC DC 10 11 11 Y 1 -9.39 1.20 119.70 110.31 B B B C3' O3' P DC DC DA 11 11 12 Y 1 14.37 1.10 110.50 124.87 B B B O3' P OP2 DC DA DA 11 12 12 Y 1 -27.20 2.20 105.20 78.00 B B B O3' P OP1 DC DA DA 11 12 12 Y 1 -20.84 1.20 119.70 98.86 B B B C3' O3' P DA DA DC 12 12 13 Y 1 29.42 1.10 110.50 139.92 B B B O3' P OP2 DA DC DC 12 13 13 Y 1 -39.74 2.20 105.20 65.46 B B B O3' P OP1 DA DC DC 12 13 13 Y 1 -11.04 1.20 119.70 108.66 C C C C3' O3' P DG DG DT 14 14 15 Y 1 15.30 1.10 110.50 125.80 C C C O3' P OP2 DG DT DT 14 15 15 Y 1 -28.90 2.20 105.20 76.30 C C C O3' P OP1 DG DT DT 14 15 15 Y 1 -18.61 1.20 119.70 101.09 C C C C3' O3' P DT DT DG 15 15 16 Y 1 27.84 1.10 110.50 138.34 C C C O3' P OP2 DT DG DG 15 16 16 Y 1 -39.01 2.20 105.20 66.19 C C C O3' P OP1 DT DG DG 15 16 16 Y 1 11.09 1.10 110.50 121.59 C C C O3' P OP2 DT DT DT 21 22 22 Y 1 -18.66 2.20 105.20 86.54 C C C O3' P OP1 DT DT DT 21 22 22 Y 1 -19.68 1.20 119.70 100.02 C C C C3' O3' P DT DT DC 22 22 23 Y 1 28.53 1.10 110.50 139.03 C C C O3' P OP2 DT DC DC 22 23 23 Y 1 -39.73 2.20 105.20 65.47 C C C O3' P OP1 DT DC DC 22 23 23 Y 1 -18.15 1.20 119.70 101.55 C C C C3' O3' P DC DC DG 23 23 24 Y 1 23.95 1.10 110.50 134.45 C C C O3' P OP2 DC DG DG 23 24 24 Y 1 -38.61 2.20 105.20 66.59 C C C O3' P OP1 DC DG DG 23 24 24 Y 1 -18.75 1.20 119.70 100.95 C C C C3' O3' P DG DG DG 24 24 25 Y 1 24.80 1.10 110.50 135.30 C C C O3' P OP2 DG DG DG 24 25 25 Y 1 -38.82 2.20 105.20 66.38 C C C O3' P OP1 DG DG DG 24 25 25 Y 1 -11.04 1.20 119.70 108.66 C C C C3' O3' P DG DG DT 25 25 26 Y 1 15.29 1.10 110.50 125.79 C C C O3' P OP2 DG DT DT 25 26 26 Y 1 -29.00 2.20 105.20 76.20 C C C O3' P OP1 DG DT DT 25 26 26 Y 1 A A CG CD1 LEU LEU 828 828 0.419 0.037 1.514 1.933 N 1 A A CG CD2 LEU LEU 828 828 0.338 0.037 1.514 1.852 N 1 A A CA CB ALA ALA 829 829 0.162 0.021 1.520 1.682 N 1 A A CA CB LYS LYS 831 831 0.139 0.022 1.535 1.674 N 1 A A CB CG LYS LYS 831 831 0.238 0.027 1.521 1.759 N 1 A A CD CE LYS LYS 831 831 0.353 0.025 1.508 1.861 N 1 A A CA CB SER SER 832 832 0.092 0.015 1.525 1.617 N 1 A A CG CD1 LEU LEU 833 833 0.318 0.037 1.514 1.832 N 1 A A C O LEU LEU 833 833 0.170 0.019 1.229 1.399 N 1 A A CB CG ARG ARG 834 834 0.339 0.027 1.521 1.860 N 1 A A NE CZ ARG ARG 834 834 -0.080 0.013 1.326 1.246 N 1 A A C O ASN ASN 835 835 -0.149 0.019 1.229 1.080 N 1 A A CG CD2 LEU LEU 836 836 0.313 0.037 1.514 1.827 N 1 A A C O LEU LEU 836 836 0.129 0.019 1.229 1.358 N 1 A A C N LEU MET 836 837 -0.254 0.023 1.336 1.082 Y 1 A A CA CB ALA ALA 838 838 0.164 0.021 1.520 1.684 N 1 A A CA CB ALA ALA 839 839 0.171 0.021 1.520 1.691 N 1 A A C N ALA HIS 839 840 -0.173 0.023 1.336 1.163 Y 1 A A CA CB SER SER 841 841 0.182 0.015 1.525 1.707 N 1 A A C O ALA ALA 842 842 0.196 0.019 1.229 1.425 N 1 A A C N ALA ASP 842 843 -0.301 0.023 1.336 1.035 Y 1 A A CA CB LEU LEU 844 844 0.175 0.023 1.533 1.708 N 1 A A C N LEU LYS 844 845 -0.352 0.023 1.336 0.984 Y 1 A A CB CG ARG ARG 872 872 0.293 0.027 1.521 1.814 N 1 A A CG CD ARG ARG 872 872 0.178 0.025 1.515 1.693 N 1 A A CD NE ARG ARG 872 872 -0.161 0.017 1.460 1.299 N 1 A A NE CZ ARG ARG 872 872 -0.106 0.013 1.326 1.220 N 1 A A C O ARG ARG 872 872 -0.176 0.019 1.229 1.053 N 1 A A CA CB ALA ALA 873 873 0.166 0.021 1.520 1.686 N 1 A A C O ALA ALA 873 873 -0.138 0.019 1.229 1.091 N 1 B B O3' P DA DC 1 2 -0.334 0.012 1.607 1.273 Y 1 B B O3' P DC DC 2 3 -0.149 0.012 1.607 1.458 Y 1 B B O3' P DC DG 3 4 -0.154 0.012 1.607 1.453 Y 1 B B O3' P DG DA 4 5 -0.093 0.012 1.607 1.514 Y 1 B B O3' P DC DA 11 12 -0.103 0.012 1.607 1.504 Y 1 B B O3' P DA DC 12 13 -0.336 0.012 1.607 1.271 Y 1 C C O3' P DG DT 14 15 -0.139 0.012 1.607 1.468 Y 1 C C O3' P DT DG 15 16 -0.342 0.012 1.607 1.265 Y 1 C C O3' C3' DT DT 21 21 -0.059 0.006 1.419 1.360 N 1 C C O3' P DT DC 22 23 -0.334 0.012 1.607 1.273 Y 1 C C O3' P DC DG 23 24 -0.153 0.012 1.607 1.454 Y 1 C C O3' P DG DG 24 25 -0.141 0.012 1.607 1.466 Y 1 C C O3' P DG DT 25 26 -0.138 0.012 1.607 1.469 Y 1 A ALA 818 -141.77 -40.48 1 A SER 822 -142.22 -132.88 1 A SER 824 -104.55 -79.42 1 A LEU 828 -72.51 -76.80 1 A ASP 830 63.62 -168.53 1 A LYS 831 -143.56 15.44 1 A SER 832 71.76 99.68 1 A LEU 833 -168.50 90.95 1 A ARG 834 -142.40 -87.14 1 A ASN 835 45.22 -124.90 1 A LEU 836 -107.71 40.48 1 A LYS 845 -106.83 -162.72 1 A ALA 862 -140.60 -37.03 1 A SER 866 -147.55 -128.06 1 A LEU 867 -90.06 55.30 1 A SER 868 -106.84 -77.05 1 A PRO 871 -82.92 43.02 1 A ARG 872 176.09 -173.29 HADDOCK model of MyT1 F4F5 - DNA complex 1 N N 2 N N 3 N N 4 N N 4 N N metalc 2.548 A CYS 802 A SG CYS 15 1_555 A ZN 901 D ZN ZN 1_555 metalc 1.944 A CYS 807 A SG CYS 20 1_555 A ZN 901 D ZN ZN 1_555 metalc 2.220 A HIS 820 A NE2 HIS 33 1_555 A ZN 901 D ZN ZN 1_555 metalc 1.907 A CYS 826 A SG CYS 39 1_555 A ZN 901 D ZN ZN 1_555 metalc 1.956 A CYS 846 A SG CYS 59 1_555 A ZN 902 E ZN ZN 1_555 metalc 2.383 A CYS 851 A SG CYS 64 1_555 A ZN 902 E ZN ZN 1_555 metalc 2.639 A HIS 864 A NE2 HIS 77 1_555 A ZN 902 E ZN ZN 1_555 metalc 1.976 A CYS 870 A SG CYS 83 1_555 A ZN 902 E ZN ZN 1_555 hydrog WATSON-CRICK B DA 1 B N1 DA 1 1_555 C DT 26 C N3 DT 13 1_555 hydrog WATSON-CRICK B DA 1 B N6 DA 1 1_555 C DT 26 C O4 DT 13 1_555 hydrog WATSON-CRICK B DC 2 B N3 DC 2 1_555 C DG 25 C N1 DG 12 1_555 hydrog WATSON-CRICK B DC 2 B N4 DC 2 1_555 C DG 25 C O6 DG 12 1_555 hydrog WATSON-CRICK B DC 2 B O2 DC 2 1_555 C DG 25 C N2 DG 12 1_555 hydrog WATSON-CRICK B DC 3 B N3 DC 3 1_555 C DG 24 C N1 DG 11 1_555 hydrog WATSON-CRICK B DC 3 B N4 DC 3 1_555 C DG 24 C O6 DG 11 1_555 hydrog WATSON-CRICK B DC 3 B O2 DC 3 1_555 C DG 24 C N2 DG 11 1_555 hydrog WATSON-CRICK B DG 4 B N1 DG 4 1_555 C DC 23 C N3 DC 10 1_555 hydrog WATSON-CRICK B DG 4 B N2 DG 4 1_555 C DC 23 C O2 DC 10 1_555 hydrog WATSON-CRICK B DG 4 B O6 DG 4 1_555 C DC 23 C N4 DC 10 1_555 hydrog WATSON-CRICK B DA 5 B N1 DA 5 1_555 C DT 22 C N3 DT 9 1_555 hydrog WATSON-CRICK B DA 5 B N6 DA 5 1_555 C DT 22 C O4 DT 9 1_555 hydrog WATSON-CRICK B DA 6 B N1 DA 6 1_555 C DT 21 C N3 DT 8 1_555 hydrog WATSON-CRICK B DA 6 B N6 DA 6 1_555 C DT 21 C O4 DT 8 1_555 hydrog WATSON-CRICK B DA 7 B N1 DA 7 1_555 C DT 20 C N3 DT 7 1_555 hydrog WATSON-CRICK B DA 7 B N6 DA 7 1_555 C DT 20 C O4 DT 7 1_555 hydrog WATSON-CRICK B DG 8 B N1 DG 8 1_555 C DC 19 C N3 DC 6 1_555 hydrog WATSON-CRICK B DG 8 B N2 DG 8 1_555 C DC 19 C O2 DC 6 1_555 hydrog WATSON-CRICK B DG 8 B O6 DG 8 1_555 C DC 19 C N4 DC 6 1_555 hydrog WATSON-CRICK B DT 9 B N3 DT 9 1_555 C DA 18 C N1 DA 5 1_555 hydrog WATSON-CRICK B DT 9 B O4 DT 9 1_555 C DA 18 C N6 DA 5 1_555 hydrog WATSON-CRICK B DT 10 B N3 DT 10 1_555 C DA 17 C N1 DA 4 1_555 hydrog WATSON-CRICK B DT 10 B O4 DT 10 1_555 C DA 17 C N6 DA 4 1_555 hydrog WATSON-CRICK B DC 11 B N3 DC 11 1_555 C DG 16 C N1 DG 3 1_555 hydrog WATSON-CRICK B DC 11 B N4 DC 11 1_555 C DG 16 C O6 DG 3 1_555 hydrog WATSON-CRICK B DC 11 B O2 DC 11 1_555 C DG 16 C N2 DG 3 1_555 hydrog WATSON-CRICK B DA 12 B N1 DA 12 1_555 C DT 15 C N3 DT 2 1_555 hydrog WATSON-CRICK B DA 12 B N6 DA 12 1_555 C DT 15 C O4 DT 2 1_555 hydrog WATSON-CRICK B DC 13 B N3 DC 13 1_555 C DG 14 C N1 DG 1 1_555 hydrog WATSON-CRICK B DC 13 B N4 DC 13 1_555 C DG 14 C O6 DG 1 1_555 hydrog WATSON-CRICK B DC 13 B O2 DC 13 1_555 C DG 14 C N2 DG 1 1_555 METAL BINDING PROTEIN/DNA MyT1, zinc finger, METAL BINDING PROTEIN-DNA complex MYT1_MOUSE UNP 1 792 Q8CFC2 SKDIKKELLTCPTPGCDGSGHITGNYASHRSLSGCPLADKSLRNLMAAHSADLKCPTPGCDGSGHITGNYASHRSLSGCP RAKKSGLKV 2MF8 PDB 2 2MF8 2MF8 PDB 3 2MF8 792 880 2MF8 792 880 Q8CFC2 A 1 5 93 1 13 2MF8 1 13 2MF8 B 2 1 13 14 26 2MF8 14 26 2MF8 C 3 1 13 1 expression tag GLY 788 2MF8 A Q8CFC2 UNP 1 1 expression tag PRO 789 2MF8 A Q8CFC2 UNP 2 1 expression tag LEU 790 2MF8 A Q8CFC2 UNP 3 1 expression tag GLY 791 2MF8 A Q8CFC2 UNP 4 1 LYS conflict PHE 793 2MF8 A Q8CFC2 UNP 793 6 1 LYS conflict ARG 879 2MF8 A Q8CFC2 UNP 879 92 BINDING SITE FOR RESIDUE ZN A 901 A ZN 901 Software 5 BINDING SITE FOR RESIDUE ZN A 902 A ZN 902 Software 5 A CYS 802 A CYS 15 5 1_555 A THR 804 A THR 17 5 1_555 A CYS 807 A CYS 20 5 1_555 A HIS 820 A HIS 33 5 1_555 A CYS 826 A CYS 39 5 1_555 A CYS 846 A CYS 59 5 1_555 A THR 848 A THR 61 5 1_555 A CYS 851 A CYS 64 5 1_555 A HIS 864 A HIS 77 5 1_555 A CYS 870 A CYS 83 5 1_555