1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Naik, M.T. Kung, C.C.-H. Huang, T. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking To be Published 0353 Solution structure of Blo 1 12 CBD domain. 10.2210/pdb2mfk/pdb pdb_00002mfk 7528.647 Blo 1 12 Chitin-binding domain (CBD) 1 man polymer no no GPLGSDLIVHEGGKTYHVVCHEEGPIPHPGNVHKYIICSKSGSLWYITVMPCSIGTKFDPISRNCVLDN GPLGSDLIVHEGGKTYHVVCHEEGPIPHPGNVHKYIICSKSGSLWYITVMPCSIGTKFDPISRNCVLDN A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample Blo t 12.0102 40697 Blomia tropicalis 562 Escherichia coli BL21(DE3) pGEX6P-3 vector The data deposited under this entry was used to solve structure of chitin-binding domain of allergen Blo t 12. The structure describes Blo t 12.0102 isoform identified from the mites found in Singapore. database_2 pdbx_database_status pdbx_nmr_software pdbx_nmr_spectrometer repository Initial release Data collection Database references Other 1 0 2014-11-19 1 1 2023-06-14 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.status_code_nmr_data _pdbx_nmr_software.name _pdbx_nmr_spectrometer.model BMRB Y PDBJ 2013-10-15 REL REL REL REL FIRST FIVE RESIDUES (GPLGS) ARE EXPRESSION TAGS 1207 264 468 119 356 6 52 0 0 47 47 NMR data was acquired at 295K using Shigemi NMR tubes. 0.17643 structures with the lowest energy 400 20 6.20 0.41 1 PSVS 0.01981 0.01948 2D 1H-15N HSQC 2D 1H-13C HSQC 3D HNCO 3D HNCA 3D HNCACB 3D CBCA(CO)NH 3D H(CCO)NH 3D CCcoNH 3D HCCH-COSY 3D HBHA(CO)NH 2D-hbCBcgcdHD 3D 1H-13C NOESYHSQC 3D 1H-15N NOESYHSQC 2D 1H-15N IPAP HSQC 1 mM [U-100% 13C; U-100% 15N] 50 mM 100 mM 1 mM [U-100% 15N] 50 mM 100 mM 1 mM [U-100% 15N] 50 mM 100 mM 11 mg/mL 6.0 ambient 295 K Initial structure ensemble was calculated by semi-automated NOESY assignment by CYANA. The assignments were manually verified in Sparky and final structure annealing was performed in CYANA. Structure and restraints from CYANA were imported in Xplor-NIH for explicit water refinement. torsion angle dynamics, DGSA-distance geometry simulated annealing 1 lowest energy 1 mM [U-100% 13C; U-100% 15N] Blo t 12 CBD-1, 50 mM potassium phosphate-2, 100 mM sodium chloride-3, 90% H2O/10% D2O 90% H2O/10% D2O 1 mM [U-100% 15N] Blo t 12 CBD-4, 50 mM potassium phosphate-5, 100 mM sodium chloride-6, 90% H2O/10% D2O 90% H2O/10% D2O 1 mM [U-100% 15N] Blo t 12 CBD-7, 50 mM potassium phosphate-8, 100 mM sodium chloride-9, 11 mg/ml Pf1 phage-10, 90% H2O/10% D2O 90% H2O/10% D2O Bruker Biospin collection TopSpin 3.0 Bruker Biospin processing TopSpin 3.0 Goddard chemical shift assignment Sparky Goddard peak picking Sparky Guntert, Mumenthaler and Wuthrich structure solution CYANA 3.9 Guntert, Mumenthaler and Wuthrich geometry optimization CYANA 3.9 Bhattacharya and Montelione validation PSVS 1.5 Schwieters, Kuszewski, Tjandra and Clore refinement X-PLOR NIH 2.34 Guntert, Mumenthaler and Wuthrich refinement CYANA 500 Bruker AVANCE Bruker Avance 600 Bruker AVANCE Bruker Avance GLY 75 n 1 GLY 75 A PRO 76 n 2 PRO 76 A LEU 77 n 3 LEU 77 A GLY 78 n 4 GLY 78 A SER 79 n 5 SER 79 A ASP 80 n 6 ASP 80 A LEU 81 n 7 LEU 81 A ILE 82 n 8 ILE 82 A VAL 83 n 9 VAL 83 A HIS 84 n 10 HIS 84 A GLU 85 n 11 GLU 85 A GLY 86 n 12 GLY 86 A GLY 87 n 13 GLY 87 A LYS 88 n 14 LYS 88 A THR 89 n 15 THR 89 A TYR 90 n 16 TYR 90 A HIS 91 n 17 HIS 91 A VAL 92 n 18 VAL 92 A VAL 93 n 19 VAL 93 A CYS 94 n 20 CYS 94 A HIS 95 n 21 HIS 95 A GLU 96 n 22 GLU 96 A GLU 97 n 23 GLU 97 A GLY 98 n 24 GLY 98 A PRO 99 n 25 PRO 99 A ILE 100 n 26 ILE 100 A PRO 101 n 27 PRO 101 A HIS 102 n 28 HIS 102 A PRO 103 n 29 PRO 103 A GLY 104 n 30 GLY 104 A ASN 105 n 31 ASN 105 A VAL 106 n 32 VAL 106 A HIS 107 n 33 HIS 107 A LYS 108 n 34 LYS 108 A TYR 109 n 35 TYR 109 A ILE 110 n 36 ILE 110 A ILE 111 n 37 ILE 111 A CYS 112 n 38 CYS 112 A SER 113 n 39 SER 113 A LYS 114 n 40 LYS 114 A SER 115 n 41 SER 115 A GLY 116 n 42 GLY 116 A SER 117 n 43 SER 117 A LEU 118 n 44 LEU 118 A TRP 119 n 45 TRP 119 A TYR 120 n 46 TYR 120 A ILE 121 n 47 ILE 121 A THR 122 n 48 THR 122 A VAL 123 n 49 VAL 123 A MET 124 n 50 MET 124 A PRO 125 n 51 PRO 125 A CYS 126 n 52 CYS 126 A SER 127 n 53 SER 127 A ILE 128 n 54 ILE 128 A GLY 129 n 55 GLY 129 A THR 130 n 56 THR 130 A LYS 131 n 57 LYS 131 A PHE 132 n 58 PHE 132 A ASP 133 n 59 ASP 133 A PRO 134 n 60 PRO 134 A ILE 135 n 61 ILE 135 A SER 136 n 62 SER 136 A ARG 137 n 63 ARG 137 A ASN 138 n 64 ASN 138 A CYS 139 n 65 CYS 139 A VAL 140 n 66 VAL 140 A LEU 141 n 67 LEU 141 A ASP 142 n 68 ASP 142 A ASN 143 n 69 ASN 143 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N GLU 85 A N GLU 11 A O LYS 88 A O LYS 14 A N ILE 100 A N ILE 26 A O ILE 110 A O ILE 36 A N TYR 109 A N TYR 35 A O MET 124 A O MET 50 A N LYS 131 A N LYS 57 A O VAL 140 A O VAL 66 5 A A OE2 HZ3 GLU LYS 85 108 1.59 15 A A OE2 HZ3 GLU LYS 85 108 1.58 15 A A OD1 HD1 ASP HIS 80 91 1.59 2 A PRO 76 -65.62 99.83 2 A ASP 80 -160.14 104.80 3 A ASP 80 -161.80 94.57 3 A ARG 137 70.73 51.02 4 A LEU 77 -173.04 136.73 4 A ASN 105 -167.32 102.04 5 A PRO 76 -76.51 34.57 5 A LEU 77 -88.52 33.99 5 A SER 115 -108.23 79.81 5 A ARG 137 74.62 41.91 7 A SER 115 -102.15 77.98 8 A ASN 105 -167.63 105.31 8 A ARG 137 72.25 48.60 9 A ARG 137 71.31 46.21 10 A ASN 105 -168.88 117.70 10 A ARG 137 73.11 41.52 11 A ARG 137 71.21 48.83 12 A ASN 105 -163.84 87.30 12 A ARG 137 70.76 41.57 14 A ASN 105 -167.40 106.89 15 A PRO 76 -78.46 44.11 15 A ASN 105 -169.23 104.21 16 A ASN 105 -168.07 97.47 17 A ASN 105 -168.24 101.86 18 A ASP 80 -164.44 113.21 18 A ARG 137 70.33 43.22 19 A ASN 105 -169.15 109.85 19 A ARG 137 66.81 62.87 20 A ARG 137 66.42 62.02 lowest energy, model1 NMR solution structure of chitin-binding domain from dust mite group XII allergen Blo t 12 1 N N disulf 2.027 A CYS 94 A SG CYS 20 1_555 A CYS 112 A SG CYS 38 1_555 disulf 2.022 A CYS 126 A SG CYS 52 1_555 A CYS 139 A SG CYS 65 1_555 ALLERGEN Allergen, Chitin-binding Domain 2MFK PDB 1 2MFK 75 143 2MFK 75 143 2MFK A 1 1 69 2 3 2 anti-parallel anti-parallel anti-parallel anti-parallel A ASP 80 A ASP 6 A GLU 85 A GLU 11 A LYS 88 A LYS 14 A VAL 93 A VAL 19 A GLY 98 A GLY 24 A PRO 101 A PRO 27 A LYS 108 A LYS 34 A SER 115 A SER 41 A LEU 118 A LEU 44 A PRO 125 A PRO 51 A THR 130 A THR 56 A ASP 133 A ASP 59 A ASN 138 A ASN 64 A LEU 141 A LEU 67