1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Serrano, S.
Apellaniz, B.
Huarte, N.L.
Nieva, J.L.
Jimenez, M.A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
290
12999
13015
10.1074/jbc.M115.644351
25787074
The Atomic Structure of the HIV-1 gp41 Transmembrane Domain and Its Connection to the Immunogenic Membrane-proximal External Region.
2015
10.2210/pdb2mg2/pdb
pdb_00002mg2
3489.308
Transmembrane protein gp41
1
syn
polymer
no
no
KKKNWFDITNWLWYIKLFIMIVGGLVKK
KKKNWFDITNWLWYIKLFIMIVGGLVKK
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
database_2
pdbx_database_status
pdbx_nmr_software
pdbx_nmr_spectrometer
repository
Initial release
Database references
Data collection
Database references
Other
1
0
2015-03-25
1
1
2015-06-17
1
2
2023-06-14
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_nmr_data
_pdbx_nmr_software.name
_pdbx_nmr_spectrometer.model
BMRB
Y
RCSB
2013-10-24
REL
REL
REL
REL
11676
HIV-1
Human immunodeficiency virus 1
sample
THESE RESIDUES ARE NON-NATIVE RESIDUES ADDED FOR SOLUBILITY PURPOSE.
structures with the least restraint violations
100
20
2D 1H-1H COSY
2D 1H-1H TOCSY
2D 1H-1H NOESY
2D 1H-13C HSQC aliphatic
0.5
mM
67.5
%
7.5
%
[U-100% 2H]
25
%
2
mM
0.1
mM
2
7.0
ambient
298
K
torsion angle dynamics, molecular dynamics
1
lowest energy
0.5 mM CpreTM, 67.5 % H2O, 7.5 % [U-100% 2H] D2O, 25 % hexafluoroisopropanol, 2 mM HEPES, 0.1 mM DSS, hexafluoroisopropanol/water
hexafluoroisopropanol/water
Bruker Biospin
collection
TopSpin
Bruker Biospin
processing
TopSpin
Goddard
chemical shift assignment
Sparky
Guntert, Mumenthaler and Wuthrich
structure solution
CYANA
Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman
refinement
Amber
refinement
CYANA
600
Bruker
AVANCE
Bruker Avance
LYS
1
n
1
LYS
1
A
LYS
2
n
2
LYS
2
A
LYS
3
n
3
LYS
3
A
ASN
4
n
4
ASN
4
A
TRP
5
n
5
TRP
5
A
PHE
6
n
6
PHE
6
A
ASP
7
n
7
ASP
7
A
ILE
8
n
8
ILE
8
A
THR
9
n
9
THR
9
A
ASN
10
n
10
ASN
10
A
TRP
11
n
11
TRP
11
A
LEU
12
n
12
LEU
12
A
TRP
13
n
13
TRP
13
A
TYR
14
n
14
TYR
14
A
ILE
15
n
15
ILE
15
A
LYS
16
n
16
LYS
16
A
LEU
17
n
17
LEU
17
A
PHE
18
n
18
PHE
18
A
ILE
19
n
19
ILE
19
A
MET
20
n
20
MET
20
A
ILE
21
n
21
ILE
21
A
VAL
22
n
22
VAL
22
A
GLY
23
n
23
GLY
23
A
GLY
24
n
24
GLY
24
A
LEU
25
n
25
LEU
25
A
VAL
26
n
26
VAL
26
A
LYS
27
n
27
LYS
27
A
LYS
28
n
28
LYS
28
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
4
A
LYS
2
-154.26
73.10
4
A
LYS
3
-124.32
-69.87
5
A
LYS
2
-66.95
93.68
5
A
LYS
3
-125.92
-76.23
7
A
LYS
3
-127.33
-66.08
8
A
LYS
2
-56.81
100.29
12
A
LYS
3
-70.06
-71.46
14
A
LYS
2
-67.29
96.38
16
A
LYS
3
-126.71
-78.32
18
A
LYS
3
-120.68
-66.40
20
A
LYS
3
-123.63
-66.14
lowest energy, model1
NMR assignment and structure of a peptide derived from the membrane proximal external region of HIV-1 gp41 in the presence of hexafluoroisopropanol
1
N
N
A
ASN
4
A
ASN
4
HELX_P
A
VAL
26
A
VAL
26
1
1
23
VIRAL PROTEIN
HIV-1 gp41 protein, neutralizing epitope, peptide vaccine, MPER, VIRAL PROTEIN
S4TEY8_9HIV1
UNP
1
161
S4TEY8
NWFDITNWLWYIKLFIMIVGGLV
161
183
2MG2
4
26
S4TEY8
A
1
4
26
1
SEE REMARK 999
LYS
1
2MG2
A
S4TEY8
UNP
1
1
SEE REMARK 999
LYS
2
2MG2
A
S4TEY8
UNP
2
1
SEE REMARK 999
LYS
3
2MG2
A
S4TEY8
UNP
3
1
SEE REMARK 999
LYS
27
2MG2
A
S4TEY8
UNP
27
1
SEE REMARK 999
LYS
28
2MG2
A
S4TEY8
UNP
28