1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Serrano, S. Apellaniz, B. Huarte, N.L. Nieva, J.L. Jimenez, M.A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US J.Biol.Chem. JBCHA3 0071 0021-9258 290 12999 13015 10.1074/jbc.M115.644351 25787074 The Atomic Structure of the HIV-1 gp41 Transmembrane Domain and Its Connection to the Immunogenic Membrane-proximal External Region. 2015 10.2210/pdb2mg2/pdb pdb_00002mg2 3489.308 Transmembrane protein gp41 1 syn polymer no no KKKNWFDITNWLWYIKLFIMIVGGLVKK KKKNWFDITNWLWYIKLFIMIVGGLVKK A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n database_2 pdbx_database_status pdbx_nmr_software pdbx_nmr_spectrometer repository Initial release Database references Data collection Database references Other 1 0 2015-03-25 1 1 2015-06-17 1 2 2023-06-14 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.status_code_nmr_data _pdbx_nmr_software.name _pdbx_nmr_spectrometer.model BMRB Y RCSB 2013-10-24 REL REL REL REL 11676 HIV-1 Human immunodeficiency virus 1 sample THESE RESIDUES ARE NON-NATIVE RESIDUES ADDED FOR SOLUBILITY PURPOSE. structures with the least restraint violations 100 20 2D 1H-1H COSY 2D 1H-1H TOCSY 2D 1H-1H NOESY 2D 1H-13C HSQC aliphatic 0.5 mM 67.5 % 7.5 % [U-100% 2H] 25 % 2 mM 0.1 mM 2 7.0 ambient 298 K torsion angle dynamics, molecular dynamics 1 lowest energy 0.5 mM CpreTM, 67.5 % H2O, 7.5 % [U-100% 2H] D2O, 25 % hexafluoroisopropanol, 2 mM HEPES, 0.1 mM DSS, hexafluoroisopropanol/water hexafluoroisopropanol/water Bruker Biospin collection TopSpin Bruker Biospin processing TopSpin Goddard chemical shift assignment Sparky Guntert, Mumenthaler and Wuthrich structure solution CYANA Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman refinement Amber refinement CYANA 600 Bruker AVANCE Bruker Avance LYS 1 n 1 LYS 1 A LYS 2 n 2 LYS 2 A LYS 3 n 3 LYS 3 A ASN 4 n 4 ASN 4 A TRP 5 n 5 TRP 5 A PHE 6 n 6 PHE 6 A ASP 7 n 7 ASP 7 A ILE 8 n 8 ILE 8 A THR 9 n 9 THR 9 A ASN 10 n 10 ASN 10 A TRP 11 n 11 TRP 11 A LEU 12 n 12 LEU 12 A TRP 13 n 13 TRP 13 A TYR 14 n 14 TYR 14 A ILE 15 n 15 ILE 15 A LYS 16 n 16 LYS 16 A LEU 17 n 17 LEU 17 A PHE 18 n 18 PHE 18 A ILE 19 n 19 ILE 19 A MET 20 n 20 MET 20 A ILE 21 n 21 ILE 21 A VAL 22 n 22 VAL 22 A GLY 23 n 23 GLY 23 A GLY 24 n 24 GLY 24 A LEU 25 n 25 LEU 25 A VAL 26 n 26 VAL 26 A LYS 27 n 27 LYS 27 A LYS 28 n 28 LYS 28 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 4 A LYS 2 -154.26 73.10 4 A LYS 3 -124.32 -69.87 5 A LYS 2 -66.95 93.68 5 A LYS 3 -125.92 -76.23 7 A LYS 3 -127.33 -66.08 8 A LYS 2 -56.81 100.29 12 A LYS 3 -70.06 -71.46 14 A LYS 2 -67.29 96.38 16 A LYS 3 -126.71 -78.32 18 A LYS 3 -120.68 -66.40 20 A LYS 3 -123.63 -66.14 lowest energy, model1 NMR assignment and structure of a peptide derived from the membrane proximal external region of HIV-1 gp41 in the presence of hexafluoroisopropanol 1 N N A ASN 4 A ASN 4 HELX_P A VAL 26 A VAL 26 1 1 23 VIRAL PROTEIN HIV-1 gp41 protein, neutralizing epitope, peptide vaccine, MPER, VIRAL PROTEIN S4TEY8_9HIV1 UNP 1 161 S4TEY8 NWFDITNWLWYIKLFIMIVGGLV 161 183 2MG2 4 26 S4TEY8 A 1 4 26 1 SEE REMARK 999 LYS 1 2MG2 A S4TEY8 UNP 1 1 SEE REMARK 999 LYS 2 2MG2 A S4TEY8 UNP 2 1 SEE REMARK 999 LYS 3 2MG2 A S4TEY8 UNP 3 1 SEE REMARK 999 LYS 27 2MG2 A S4TEY8 UNP 27 1 SEE REMARK 999 LYS 28 2MG2 A S4TEY8 UNP 28