1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Afroz, T.
Skrisovska, L.
Belloc, E.
Boixet, J.G.
Mendez, R.
Allain, F.H.-T.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
R
C
N
12
N
O
N
13
R
C
Y
14
N
N
Y
15
N
C
Y
16
N
N
Y
17
N
C
Y
18
N
C
N
19
N
N
Y
20
N
N
Y
21
N
C
Y
22
N
N
Y
23
N
C
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
N
N
39
S
C
N
40
N
C
N
41
N
O
N
42
N
C
N
43
N
O
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
N
N
52
S
C
N
53
N
C
N
54
N
O
N
55
N
C
N
56
N
C
N
57
N
C
N
58
N
N
N
59
N
C
N
60
N
N
N
61
N
N
N
62
N
O
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
N
N
79
S
C
N
80
N
C
N
81
N
O
N
82
N
C
N
83
N
C
N
84
N
O
N
85
N
N
N
86
N
O
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
N
N
96
S
C
N
97
N
C
N
98
N
O
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
O
N
112
N
P
N
113
N
O
N
114
N
O
N
115
N
O
N
116
N
C
N
117
R
C
N
118
N
O
N
119
S
C
N
120
N
O
N
121
R
C
N
122
N
O
N
123
R
C
N
124
N
N
N
125
N
C
N
126
N
O
N
127
N
N
N
128
N
C
N
129
N
N
N
130
N
C
N
131
N
C
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
N
N
147
R
C
N
148
N
C
N
149
N
O
N
150
N
C
N
151
N
S
N
152
N
O
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
N
N
161
S
C
N
162
N
C
N
163
N
O
N
164
N
C
N
165
N
C
N
166
N
C
N
167
N
O
N
168
N
N
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
N
N
181
S
C
N
182
N
C
N
183
N
O
N
184
N
C
N
185
N
C
N
186
N
C
N
187
N
O
N
188
N
O
N
189
N
O
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
N
N
200
N
C
N
201
N
C
N
202
N
O
N
203
N
O
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
N
N
210
S
C
N
211
N
C
N
212
N
O
N
213
N
C
Y
214
N
C
Y
215
N
N
Y
216
N
C
Y
217
N
C
Y
218
N
N
N
219
N
O
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
S
C
N
235
N
C
N
236
N
C
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
N
N
253
S
C
N
254
N
C
N
255
N
O
N
256
N
C
N
257
N
C
N
258
N
C
N
259
N
C
N
260
N
O
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
N
N
275
S
C
N
276
N
C
N
277
N
O
N
278
N
C
N
279
N
C
N
280
N
C
N
281
N
C
N
282
N
N
N
283
N
O
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
N
N
300
S
C
N
301
N
C
N
302
N
O
N
303
N
C
N
304
N
C
N
305
N
S
N
306
N
C
N
307
N
O
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
N
N
320
S
C
N
321
N
C
N
322
N
O
N
323
N
C
Y
324
N
C
Y
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
C
N
330
N
O
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
N
N
343
S
C
N
344
N
C
N
345
N
O
N
346
N
C
N
347
N
C
N
348
N
C
N
349
N
O
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
N
N
360
S
C
N
361
N
C
N
362
N
O
N
363
N
C
N
364
N
O
N
365
N
O
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
N
N
374
S
C
N
375
N
C
N
376
N
O
N
377
R
C
N
378
N
O
N
379
N
C
N
380
N
O
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
N
N
391
S
C
N
392
N
C
N
393
N
O
N
394
N
C
Y
395
N
C
Y
396
N
C
Y
397
N
C
Y
398
N
N
Y
399
N
C
Y
400
N
C
Y
401
N
C
Y
402
N
C
Y
403
N
C
N
404
N
O
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
N
N
418
S
C
N
419
N
C
N
420
N
O
N
421
N
C
Y
422
N
C
Y
423
N
C
Y
424
N
C
Y
425
N
C
Y
426
N
C
Y
427
N
C
N
428
N
O
N
429
N
O
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
O
N
442
N
P
N
443
N
O
N
444
N
O
N
445
N
O
N
446
N
C
N
447
R
C
N
448
N
O
N
449
S
C
N
450
N
O
N
451
R
C
N
452
N
O
N
453
R
C
N
454
N
N
N
455
N
C
N
456
N
O
N
457
N
N
N
458
N
C
N
459
N
O
N
460
N
C
N
461
N
C
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
N
N
476
S
C
N
477
N
C
N
478
N
O
N
479
N
C
N
480
N
C
N
481
N
C
N
482
N
O
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
H
N
492
N
H
N
493
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
Y
25
N
sing
Y
26
N
sing
Y
27
N
doub
N
28
N
sing
Y
29
N
sing
Y
30
N
sing
Y
31
N
doub
N
32
N
sing
Y
33
N
doub
N
34
N
sing
N
35
N
sing
Y
36
N
sing
Y
37
N
doub
N
38
N
sing
Y
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
doub
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
doub
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
doub
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
doub
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
doub
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
doub
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
doub
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
doub
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
doub
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
doub
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
doub
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
doub
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
doub
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
Y
215
N
sing
Y
216
N
doub
Y
217
N
doub
N
218
N
sing
Y
219
N
sing
N
220
N
sing
Y
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
doub
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
doub
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
doub
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
doub
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
doub
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
doub
N
326
N
sing
Y
327
N
doub
N
328
N
sing
Y
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
doub
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
doub
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
doub
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
doub
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
Y
390
N
doub
Y
391
N
sing
Y
392
N
sing
N
393
N
sing
Y
394
N
doub
Y
395
N
sing
Y
396
N
sing
N
397
N
sing
Y
398
N
sing
Y
399
N
doub
N
400
N
sing
Y
401
N
doub
N
402
N
sing
Y
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
doub
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
Y
418
N
doub
Y
419
N
sing
Y
420
N
sing
N
421
N
sing
Y
422
N
doub
N
423
N
sing
Y
424
N
doub
N
425
N
sing
Y
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
doub
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
doub
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
doub
N
462
N
sing
N
463
N
doub
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
doub
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
US
Genes Dev.
GEDEEP
2056
0890-9369
28
1498
1514
10.1101/gad.241133.114
24990967
A fly trap mechanism provides sequence-specific RNA recognition by CPEB proteins
2014
10.2210/pdb2mki/pdb
pdb_00002mki
10.13018/BMR19776
22825.979
Cytoplasmic polyadenylation element-binding protein 4
UNP residues 53-255
1
man
polymer
1507.928
RNA (5'-R(*CP*UP*UP*UP*A)-3')
1
syn
polymer
CPE-BP4, CPE-binding protein 4, hCPEB-4
no
no
SHQNGERVERYSRKVFVGGLPPDIDEDEITASFRRFGPLIVDWPHKAESKSYFPPKGYAFLLFQDESSVQALIDACIEED
GKLYLCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGIDTDPELK
YPKGAGRVAFSNQQSYIAAISARFVQLQHGEIDKRVEVKPYVL
SHQNGERVERYSRKVFVGGLPPDIDEDEITASFRRFGPLIVDWPHKAESKSYFPPKGYAFLLFQDESSVQALIDACIEED
GKLYLCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGIDTDPELK
YPKGAGRVAFSNQQSYIAAISARFVQLQHGEIDKRVEVKPYVL
A
polypeptide(L)
no
no
CUUUA
CUUUA
B
polyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
CPEB4, KIAA1673
9606
Homo sapiens
562
Escherichia coli
pET28A(+)
vector
chem_comp_atom
chem_comp_bond
database_2
pdbx_nmr_software
pdbx_nmr_spectrometer
repository
Initial release
Data collection
Database references
1
0
2014-07-23
1
1
2024-05-01
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_pdbx_nmr_spectrometer.model
BMRB
Y
PDBJ
2014-02-07
REL
REL
REL
THIS PROTEIN SEQUENCE IS ISOFORM 3 OF CPEB4_HUMAN.
structures with the lowest energy
30
20
3
2D 1H-15N HSQC
2D 1H-13C HSQC
2D 1H-13C HSQC aliphatic
2D 1H-13C HSQC aromatic
2D 1H-1H TOCSY
2D 1H-1H NOESY
3D trHNCA
3D trHN(CO)CA
3D trCBCA(CO)NH
3D trHNCACB
3D trHNCO
3D trHCACO
3D HCCH-TOCSY
3D 1H-15N NOESY
3D 1H-13C NOESY aliphatic
3D 1H-13C NOESY aromatic
3D HCCH-TOCSY
2D 1H-15N TROSY
2D 13C F1-filtered F2-filtered NOESY
2D 1H-1H F1-13C-filtered F2-13C-edited NOESY
3D 13C F1-edited, F3-filtered NOESY HSQC
50
mM
100
mM
1
mM
0.6
mM
[U-100% 13C; U-100% 15N]
0.6
mM
0.4-0.6
mM
[U-100% 13C; U-100% 15N]
0.4-06
mM
100
mM
1
mM
50
mM
0.4-0.6
mM
[U-100% 13C; U-100% 15N; U-80% 2H]
0.4-0.6
mM
100
mM
1
mM
50
mM
0.4-0.6
mM
[U-100% 15N]
0.4-0.6
mM
100
mM
1
mM
50
mM
0.4-0.6
mM
[U-100% 15N]
0.4-0.6
mM
100
mM
1
mM
50
mM
0.15
7.0
ambient
303
K
simulated annealing
1
closest to the average
50 mM sodium phosphate-1, 100 mM sodium chloride-2, 1 mM DTT-3, 0.6 mM [U-100% 13C; U-100% 15N] CPEB4RRM12-4, 0.6 mM 5'-CUUUA-3'-5, 90% H2O/10% D2O
90% H2O/10% D2O
0.4-0.6 mM [U-100% 13C; U-100% 15N] CPEB4RRM12-6, 0.4-06 mM RNA (5'-CUUUA)-3')-7, 100 mM sodium chloride-8, 1 mM DTT-9, 50 mM sodium phosphate-10, 100% D2O
100% D2O
0.4-0.6 mM [U-100% 13C; U-100% 15N; U-80% 2H] CPEB4RRM12-11, 0.4-0.6 mM 5'-CUUUA-3'-12, 100 mM sodium chloride-13, 1 mM DTT-14, 50 mM sodium phosphate-15, 90% H2O/10% D2O
90% H2O/10% D2O
0.4-0.6 mM [U-100% 15N] CPEB4RRM12-16, 0.4-0.6 mM 5'-CUUUA-3'-17, 100 mM sodium chloride-18, 1 mM DTT-19, 50 mM potassium phosphate-20, 100% D2O
100% D2O
0.4-0.6 mM [U-100% 15N] CPEB4RRM12-21, 0.4-0.6 mM 5'-CUUUA-3'-22, 100 mM sodium chloride-23, 1 mM DTT-24, 50 mM potassium phosphate-25, 90% H2O/10% D2O
90% H2O/10% D2O
Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman
refinement
Amber
900
Bruker
AVANCE
Bruker Avance
700
Bruker
AVANCE
Bruker Avance
600
Bruker
AVANCE
Bruker Avance
500
Bruker
AVANCE
Bruker Avance
SER
53
n
1
SER
53
A
HIS
54
n
2
HIS
54
A
GLN
55
n
3
GLN
55
A
ASN
56
n
4
ASN
56
A
GLY
57
n
5
GLY
57
A
GLU
58
n
6
GLU
58
A
ARG
59
n
7
ARG
59
A
VAL
60
n
8
VAL
60
A
GLU
61
n
9
GLU
61
A
ARG
62
n
10
ARG
62
A
TYR
63
n
11
TYR
63
A
SER
64
n
12
SER
64
A
ARG
65
n
13
ARG
65
A
LYS
66
n
14
LYS
66
A
VAL
67
n
15
VAL
67
A
PHE
68
n
16
PHE
68
A
VAL
69
n
17
VAL
69
A
GLY
70
n
18
GLY
70
A
GLY
71
n
19
GLY
71
A
LEU
72
n
20
LEU
72
A
PRO
73
n
21
PRO
73
A
PRO
74
n
22
PRO
74
A
ASP
75
n
23
ASP
75
A
ILE
76
n
24
ILE
76
A
ASP
77
n
25
ASP
77
A
GLU
78
n
26
GLU
78
A
ASP
79
n
27
ASP
79
A
GLU
80
n
28
GLU
80
A
ILE
81
n
29
ILE
81
A
THR
82
n
30
THR
82
A
ALA
83
n
31
ALA
83
A
SER
84
n
32
SER
84
A
PHE
85
n
33
PHE
85
A
ARG
86
n
34
ARG
86
A
ARG
87
n
35
ARG
87
A
PHE
88
n
36
PHE
88
A
GLY
89
n
37
GLY
89
A
PRO
90
n
38
PRO
90
A
LEU
91
n
39
LEU
91
A
ILE
92
n
40
ILE
92
A
VAL
93
n
41
VAL
93
A
ASP
94
n
42
ASP
94
A
TRP
95
n
43
TRP
95
A
PRO
96
n
44
PRO
96
A
HIS
97
n
45
HIS
97
A
LYS
98
n
46
LYS
98
A
ALA
99
n
47
ALA
99
A
GLU
100
n
48
GLU
100
A
SER
101
n
49
SER
101
A
LYS
102
n
50
LYS
102
A
SER
103
n
51
SER
103
A
TYR
104
n
52
TYR
104
A
PHE
105
n
53
PHE
105
A
PRO
106
n
54
PRO
106
A
PRO
107
n
55
PRO
107
A
LYS
108
n
56
LYS
108
A
GLY
109
n
57
GLY
109
A
TYR
110
n
58
TYR
110
A
ALA
111
n
59
ALA
111
A
PHE
112
n
60
PHE
112
A
LEU
113
n
61
LEU
113
A
LEU
114
n
62
LEU
114
A
PHE
115
n
63
PHE
115
A
GLN
116
n
64
GLN
116
A
ASP
117
n
65
ASP
117
A
GLU
118
n
66
GLU
118
A
SER
119
n
67
SER
119
A
SER
120
n
68
SER
120
A
VAL
121
n
69
VAL
121
A
GLN
122
n
70
GLN
122
A
ALA
123
n
71
ALA
123
A
LEU
124
n
72
LEU
124
A
ILE
125
n
73
ILE
125
A
ASP
126
n
74
ASP
126
A
ALA
127
n
75
ALA
127
A
CYS
128
n
76
CYS
128
A
ILE
129
n
77
ILE
129
A
GLU
130
n
78
GLU
130
A
GLU
131
n
79
GLU
131
A
ASP
132
n
80
ASP
132
A
GLY
133
n
81
GLY
133
A
LYS
134
n
82
LYS
134
A
LEU
135
n
83
LEU
135
A
TYR
136
n
84
TYR
136
A
LEU
137
n
85
LEU
137
A
CYS
138
n
86
CYS
138
A
VAL
139
n
87
VAL
139
A
SER
140
n
88
SER
140
A
SER
141
n
89
SER
141
A
PRO
142
n
90
PRO
142
A
THR
143
n
91
THR
143
A
ILE
144
n
92
ILE
144
A
LYS
145
n
93
LYS
145
A
ASP
146
n
94
ASP
146
A
LYS
147
n
95
LYS
147
A
PRO
148
n
96
PRO
148
A
VAL
149
n
97
VAL
149
A
GLN
150
n
98
GLN
150
A
ILE
151
n
99
ILE
151
A
ARG
152
n
100
ARG
152
A
PRO
153
n
101
PRO
153
A
TRP
154
n
102
TRP
154
A
ASN
155
n
103
ASN
155
A
LEU
156
n
104
LEU
156
A
SER
157
n
105
SER
157
A
ASP
158
n
106
ASP
158
A
SER
159
n
107
SER
159
A
ASP
160
n
108
ASP
160
A
PHE
161
n
109
PHE
161
A
VAL
162
n
110
VAL
162
A
MET
163
n
111
MET
163
A
ASP
164
n
112
ASP
164
A
GLY
165
n
113
GLY
165
A
SER
166
n
114
SER
166
A
GLN
167
n
115
GLN
167
A
PRO
168
n
116
PRO
168
A
LEU
169
n
117
LEU
169
A
ASP
170
n
118
ASP
170
A
PRO
171
n
119
PRO
171
A
ARG
172
n
120
ARG
172
A
LYS
173
n
121
LYS
173
A
THR
174
n
122
THR
174
A
ILE
175
n
123
ILE
175
A
PHE
176
n
124
PHE
176
A
VAL
177
n
125
VAL
177
A
GLY
178
n
126
GLY
178
A
GLY
179
n
127
GLY
179
A
VAL
180
n
128
VAL
180
A
PRO
181
n
129
PRO
181
A
ARG
182
n
130
ARG
182
A
PRO
183
n
131
PRO
183
A
LEU
184
n
132
LEU
184
A
ARG
185
n
133
ARG
185
A
ALA
186
n
134
ALA
186
A
VAL
187
n
135
VAL
187
A
GLU
188
n
136
GLU
188
A
LEU
189
n
137
LEU
189
A
ALA
190
n
138
ALA
190
A
MET
191
n
139
MET
191
A
ILE
192
n
140
ILE
192
A
MET
193
n
141
MET
193
A
ASP
194
n
142
ASP
194
A
ARG
195
n
143
ARG
195
A
LEU
196
n
144
LEU
196
A
TYR
197
n
145
TYR
197
A
GLY
198
n
146
GLY
198
A
GLY
199
n
147
GLY
199
A
VAL
200
n
148
VAL
200
A
CYS
201
n
149
CYS
201
A
TYR
202
n
150
TYR
202
A
ALA
203
n
151
ALA
203
A
GLY
204
n
152
GLY
204
A
ILE
205
n
153
ILE
205
A
ASP
206
n
154
ASP
206
A
THR
207
n
155
THR
207
A
ASP
208
n
156
ASP
208
A
PRO
209
n
157
PRO
209
A
GLU
210
n
158
GLU
210
A
LEU
211
n
159
LEU
211
A
LYS
212
n
160
LYS
212
A
TYR
213
n
161
TYR
213
A
PRO
214
n
162
PRO
214
A
LYS
215
n
163
LYS
215
A
GLY
216
n
164
GLY
216
A
ALA
217
n
165
ALA
217
A
GLY
218
n
166
GLY
218
A
ARG
219
n
167
ARG
219
A
VAL
220
n
168
VAL
220
A
ALA
221
n
169
ALA
221
A
PHE
222
n
170
PHE
222
A
SER
223
n
171
SER
223
A
ASN
224
n
172
ASN
224
A
GLN
225
n
173
GLN
225
A
GLN
226
n
174
GLN
226
A
SER
227
n
175
SER
227
A
TYR
228
n
176
TYR
228
A
ILE
229
n
177
ILE
229
A
ALA
230
n
178
ALA
230
A
ALA
231
n
179
ALA
231
A
ILE
232
n
180
ILE
232
A
SER
233
n
181
SER
233
A
ALA
234
n
182
ALA
234
A
ARG
235
n
183
ARG
235
A
PHE
236
n
184
PHE
236
A
VAL
237
n
185
VAL
237
A
GLN
238
n
186
GLN
238
A
LEU
239
n
187
LEU
239
A
GLN
240
n
188
GLN
240
A
HIS
241
n
189
HIS
241
A
GLY
242
n
190
GLY
242
A
GLU
243
n
191
GLU
243
A
ILE
244
n
192
ILE
244
A
ASP
245
n
193
ASP
245
A
LYS
246
n
194
LYS
246
A
ARG
247
n
195
ARG
247
A
VAL
248
n
196
VAL
248
A
GLU
249
n
197
GLU
249
A
VAL
250
n
198
VAL
250
A
LYS
251
n
199
LYS
251
A
PRO
252
n
200
PRO
252
A
TYR
253
n
201
TYR
253
A
VAL
254
n
202
VAL
254
A
LEU
255
n
203
LEU
255
A
C
1
n
1
C
1
B
U
2
n
2
U
2
B
U
3
n
3
U
3
B
U
4
n
4
U
4
B
A
5
n
5
A
5
B
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ILE
92
A
N
ILE
40
A
O
LEU
114
A
O
LEU
62
A
O
LEU
113
A
O
LEU
61
A
N
VAL
67
A
N
VAL
15
A
N
PHE
68
A
N
PHE
16
A
O
ARG
152
A
O
ARG
100
A
O
VAL
149
A
O
VAL
97
A
N
LEU
137
A
N
LEU
85
A
O
LYS
134
A
O
LYS
82
A
N
GLU
131
A
N
GLU
79
A
N
PHE
161
A
N
PHE
109
A
O
ALA
203
A
O
ALA
151
A
N
TYR
202
A
N
TYR
150
A
O
ALA
221
A
O
ALA
169
A
O
GLY
218
A
O
GLY
166
A
N
VAL
177
A
N
VAL
125
A
N
PHE
176
A
N
PHE
124
A
O
LYS
251
A
O
LYS
199
1
B
A
5
0.117
SIDE CHAIN
2
B
A
5
0.104
SIDE CHAIN
3
B
A
5
0.125
SIDE CHAIN
4
B
U
2
0.064
SIDE CHAIN
4
B
A
5
0.110
SIDE CHAIN
5
B
A
5
0.089
SIDE CHAIN
6
B
A
5
0.113
SIDE CHAIN
7
B
A
5
0.103
SIDE CHAIN
8
B
A
5
0.139
SIDE CHAIN
9
B
A
5
0.123
SIDE CHAIN
10
B
A
5
0.094
SIDE CHAIN
11
B
A
5
0.112
SIDE CHAIN
12
B
U
2
0.062
SIDE CHAIN
12
B
A
5
0.100
SIDE CHAIN
13
B
A
5
0.080
SIDE CHAIN
14
B
A
5
0.115
SIDE CHAIN
16
B
A
5
0.115
SIDE CHAIN
17
B
A
5
0.118
SIDE CHAIN
18
B
A
5
0.113
SIDE CHAIN
19
B
U
2
0.108
SIDE CHAIN
19
B
A
5
0.119
SIDE CHAIN
1
5.44
0.70
108.50
113.94
B
B
B
O4'
C1'
N1
C
C
C
1
1
1
N
1
5.69
0.70
108.50
114.19
B
B
B
O4'
C1'
N1
U
U
U
3
3
3
N
2
-4.01
0.60
121.00
116.99
A
A
A
CB
CG
CD2
TYR
TYR
TYR
136
136
136
N
2
5.56
0.70
108.50
114.06
B
B
B
O4'
C1'
N1
U
U
U
3
3
3
N
3
4.42
0.70
108.50
112.92
B
B
B
O4'
C1'
N1
C
C
C
1
1
1
N
3
4.29
0.70
108.50
112.79
B
B
B
O4'
C1'
N1
U
U
U
3
3
3
N
4
-3.97
0.60
121.00
117.03
A
A
A
CB
CG
CD2
TYR
TYR
TYR
136
136
136
N
4
5.10
0.70
108.50
113.60
B
B
B
O4'
C1'
N1
C
C
C
1
1
1
N
4
4.60
0.70
108.50
113.10
B
B
B
O4'
C1'
N1
U
U
U
2
2
2
N
6
4.28
0.70
108.50
112.78
B
B
B
O4'
C1'
N1
U
U
U
2
2
2
N
6
5.18
0.70
108.50
113.68
B
B
B
O4'
C1'
N1
U
U
U
3
3
3
N
7
4.62
0.70
108.50
113.12
B
B
B
O4'
C1'
N1
U
U
U
2
2
2
N
8
4.78
0.70
108.50
113.28
B
B
B
O4'
C1'
N1
U
U
U
3
3
3
N
9
5.96
0.70
108.50
114.46
B
B
B
O4'
C1'
N1
C
C
C
1
1
1
N
10
-4.16
0.60
121.00
116.84
A
A
A
CB
CG
CD2
TYR
TYR
TYR
110
110
110
N
10
5.92
0.70
108.50
114.42
B
B
B
O4'
C1'
N1
C
C
C
1
1
1
N
10
5.43
0.70
108.50
113.93
B
B
B
O4'
C1'
N1
U
U
U
3
3
3
N
11
-4.38
0.70
101.30
96.92
B
B
B
C3'
C2'
C1'
C
C
C
1
1
1
N
11
7.39
0.70
108.50
115.89
B
B
B
O4'
C1'
N1
C
C
C
1
1
1
N
11
4.98
0.70
108.50
113.48
B
B
B
O4'
C1'
N1
U
U
U
3
3
3
N
12
4.64
0.70
108.50
113.14
B
B
B
O4'
C1'
N1
C
C
C
1
1
1
N
12
5.39
0.70
108.50
113.89
B
B
B
O4'
C1'
N1
U
U
U
3
3
3
N
13
5.47
0.70
108.50
113.97
B
B
B
O4'
C1'
N1
U
U
U
2
2
2
N
13
4.83
0.70
108.50
113.33
B
B
B
O4'
C1'
N1
U
U
U
3
3
3
N
14
-3.65
0.60
121.00
117.35
A
A
A
CB
CG
CD2
TYR
TYR
TYR
136
136
136
N
14
5.77
0.70
108.50
114.27
B
B
B
O4'
C1'
N1
C
C
C
1
1
1
N
15
4.45
0.70
108.50
112.95
B
B
B
O4'
C1'
N1
U
U
U
3
3
3
N
16
5.37
0.70
108.50
113.87
B
B
B
O4'
C1'
N1
U
U
U
2
2
2
N
16
4.74
0.70
108.50
113.24
B
B
B
O4'
C1'
N1
U
U
U
3
3
3
N
17
-3.61
0.60
121.00
117.39
A
A
A
CB
CG
CD2
TYR
TYR
TYR
110
110
110
N
17
4.37
0.70
108.50
112.87
B
B
B
O4'
C1'
N1
C
C
C
1
1
1
N
17
4.53
0.70
108.50
113.03
B
B
B
O4'
C1'
N1
U
U
U
3
3
3
N
18
5.35
0.70
108.50
113.85
B
B
B
O4'
C1'
N1
U
U
U
3
3
3
N
19
4.29
0.70
108.50
112.79
B
B
B
O4'
C1'
N1
C
C
C
1
1
1
N
19
4.43
0.70
108.50
112.93
B
B
B
O4'
C1'
N1
U
U
U
2
2
2
N
19
4.68
0.70
108.50
113.18
B
B
B
O4'
C1'
N1
U
U
U
3
3
3
N
20
5.07
0.70
108.50
113.57
B
B
B
O4'
C1'
N1
C
C
C
1
1
1
N
20
5.05
0.70
108.50
113.55
B
B
B
O4'
C1'
N1
U
U
U
3
3
3
N
1
A
GLU
58
57.39
10.81
1
A
PRO
74
-59.34
173.39
1
A
ASP
75
64.88
-78.94
1
A
ASP
77
-143.54
-156.01
1
A
TYR
104
53.02
-171.42
1
A
PHE
105
57.48
110.54
1
A
LYS
108
-151.35
-68.23
1
A
ASP
132
47.44
12.92
1
A
VAL
139
-142.60
-4.76
1
A
PRO
142
-62.71
8.95
1
A
PRO
148
-63.46
91.92
1
A
SER
157
-155.11
-32.66
1
A
LEU
184
-146.94
-43.54
1
A
ARG
185
52.76
102.71
1
A
TYR
197
-138.97
-30.37
1
A
CYS
201
-131.65
-35.30
1
A
ALA
217
52.38
-166.51
1
A
HIS
241
-149.49
16.89
1
A
GLU
243
53.49
15.74
2
A
ARG
65
54.13
18.94
2
A
GLU
100
-68.35
-178.99
2
A
LYS
108
-156.74
-68.53
2
A
ASP
132
52.31
9.57
2
A
ILE
144
57.17
-108.49
2
A
ASP
146
41.79
78.78
2
A
SER
159
-157.79
-45.43
2
A
ARG
185
44.15
80.48
2
A
TYR
197
-137.06
-33.60
2
A
ASP
206
-53.67
106.01
2
A
LEU
211
-161.26
6.59
2
A
TYR
213
54.18
-166.77
3
A
HIS
54
-145.93
14.21
3
A
PRO
74
-61.55
14.03
3
A
ASP
75
-140.55
32.31
3
A
SER
101
55.56
18.63
3
A
LYS
108
40.03
-93.30
3
A
ASP
132
-57.66
-1.89
3
A
SER
157
-156.76
-32.97
3
A
MET
163
-140.79
22.51
3
A
ASP
164
-147.21
13.07
3
A
PRO
181
-54.08
170.44
3
A
LEU
184
-145.70
-70.53
3
A
ARG
185
58.50
133.62
3
A
ASP
206
51.68
-58.30
3
A
THR
207
46.04
71.50
3
A
ALA
217
60.62
153.67
4
A
VAL
60
49.77
-178.54
4
A
PRO
74
-59.62
9.32
4
A
ASP
75
-138.66
-114.56
4
A
SER
103
56.07
-170.35
4
A
LYS
108
-153.41
-51.80
4
A
ASP
132
55.42
9.66
4
A
SER
157
-156.36
-32.85
4
A
ASP
158
-141.67
31.65
4
A
ASP
164
-159.69
-58.65
4
A
ARG
182
-151.58
-68.01
4
A
LEU
184
-136.89
-49.97
4
A
ARG
185
47.90
102.83
4
A
TYR
197
-142.69
40.39
4
A
LEU
211
-160.78
-5.06
4
A
TYR
213
50.98
-146.89
4
A
HIS
241
-144.62
11.87
5
A
ASN
56
-96.39
37.91
5
A
TYR
104
51.68
-157.32
5
A
PHE
105
54.72
86.41
5
A
PRO
106
-59.16
171.82
5
A
LYS
108
-155.99
22.09
5
A
GLU
118
52.95
14.48
5
A
CYS
128
-119.79
-159.92
5
A
PRO
142
-59.12
24.57
5
A
ASP
146
61.44
144.83
5
A
LEU
156
-89.17
36.01
5
A
SER
159
-152.40
-29.99
5
A
ASP
164
-160.34
-47.56
5
A
ARG
182
-146.59
-60.27
5
A
LEU
184
-159.49
-26.94
5
A
ARG
185
51.87
115.49
5
A
TYR
197
-141.70
-44.59
5
A
CYS
201
-139.84
-62.16
5
A
HIS
241
-146.90
20.41
5
A
GLU
243
53.89
16.70
6
A
GLU
58
60.66
161.61
6
A
SER
101
-78.80
36.42
6
A
LYS
102
55.74
19.10
6
A
LYS
108
-160.41
-54.23
6
A
ASP
132
51.88
14.74
6
A
VAL
180
-118.10
54.72
6
A
ARG
182
-139.70
-37.75
6
A
LEU
184
-80.61
-138.87
6
A
ARG
185
71.20
126.42
6
A
TYR
197
-140.40
42.56
6
A
ARG
235
45.39
-89.61
6
A
LEU
239
55.94
-77.13
6
A
GLN
240
58.49
132.09
7
A
HIS
54
57.78
178.46
7
A
ARG
65
-77.67
37.28
7
A
PRO
74
-55.90
172.95
7
A
ASP
75
61.18
-91.81
7
A
GLU
78
61.65
-51.62
7
A
PHE
105
56.18
102.33
7
A
LYS
108
-151.26
22.37
7
A
ASP
132
-63.76
3.94
7
A
THR
143
-117.89
63.94
7
A
ILE
144
64.38
-22.22
7
A
SER
157
-141.35
-40.52
7
A
SER
159
-149.29
-30.15
7
A
ASP
164
-158.62
-47.39
7
A
PRO
183
-80.02
32.38
7
A
ARG
185
54.23
122.01
7
A
TYR
197
-140.44
-34.77
7
A
LEU
211
-161.12
-15.88
7
A
TYR
213
56.50
-178.70
7
A
HIS
241
-146.51
20.08
7
A
GLU
243
52.85
17.82
8
A
VAL
60
47.54
28.80
8
A
PRO
74
-54.74
-9.38
8
A
ASP
75
-125.50
-123.46
8
A
ILE
76
63.55
-25.16
8
A
ASP
77
39.26
-113.88
8
A
GLU
100
59.21
14.30
8
A
SER
103
-149.69
-8.19
8
A
TYR
104
56.80
177.84
8
A
PHE
105
44.72
77.85
8
A
LYS
108
44.05
-83.42
8
A
ILE
144
-154.97
-155.39
8
A
SER
157
-158.18
-39.76
8
A
ASP
158
-143.91
39.58
8
A
ASP
164
-156.17
-40.93
8
A
LEU
184
50.70
-72.48
8
A
ARG
185
61.97
127.66
8
A
CYS
201
-134.91
-35.64
9
A
PRO
74
-64.95
13.39
9
A
LYS
98
42.04
27.98
9
A
ALA
99
53.13
-169.24
9
A
TYR
104
-141.41
33.00
9
A
ASP
132
52.72
12.23
9
A
LYS
147
-158.95
70.00
9
A
SER
157
-164.85
-32.23
9
A
ASP
158
-140.50
42.47
9
A
ASP
164
-160.55
-41.63
9
A
PRO
181
-68.28
-172.35
9
A
ARG
185
59.36
125.11
9
A
CYS
201
-133.12
-42.86
9
A
ASP
206
41.61
-84.43
9
A
LYS
212
56.17
115.20
9
A
TYR
213
65.34
170.05
9
A
ALA
234
-139.83
-156.68
9
A
HIS
241
-147.09
22.90
9
A
GLU
243
54.13
7.54
10
A
GLU
58
-155.41
-27.00
10
A
ASP
77
-143.31
-25.58
10
A
GLU
78
-154.25
-35.15
10
A
LYS
102
-95.61
41.91
10
A
PHE
105
52.60
94.21
10
A
PRO
107
-43.41
107.02
10
A
LYS
108
47.14
21.23
10
A
CYS
128
-129.74
-166.41
10
A
ASP
132
-59.80
-5.25
10
A
PRO
148
-61.84
96.82
10
A
SER
157
-172.62
-31.83
10
A
PRO
183
-65.29
20.94
10
A
ARG
185
56.92
106.74
11
A
ARG
65
-77.50
30.00
11
A
GLU
78
45.27
-99.42
11
A
GLU
100
58.88
-5.78
11
A
TYR
104
-142.72
-1.06
11
A
ILE
144
-150.31
-122.50
11
A
ASP
158
-144.50
20.33
11
A
ASP
164
-158.94
-49.91
11
A
LEU
184
-153.00
12.66
11
A
ALA
217
55.34
-173.98
11
A
ASP
245
-145.82
21.02
12
A
ARG
65
55.33
17.41
12
A
ASP
75
61.45
-79.70
12
A
ASP
77
-146.88
-24.67
12
A
GLU
78
-154.28
-36.69
12
A
ALA
99
60.45
173.38
12
A
GLU
100
53.54
82.77
12
A
SER
101
56.72
19.66
12
A
TYR
104
57.16
9.59
12
A
LYS
108
-162.14
-41.83
12
A
TYR
110
60.54
147.70
12
A
ASP
132
-55.84
-4.76
12
A
SER
157
-156.09
-33.10
12
A
MET
163
-141.74
15.36
12
A
ASP
164
-151.38
10.79
12
A
SER
166
52.89
73.17
12
A
ARG
182
-162.78
-47.24
12
A
LEU
184
-151.88
-87.12
12
A
ARG
185
59.38
126.48
12
A
ASP
206
56.72
-63.57
13
A
GLU
100
59.95
-25.08
13
A
SER
101
-163.07
-21.36
13
A
LYS
108
-146.98
-61.31
13
A
ASP
132
55.43
0.13
13
A
PRO
142
-67.82
11.91
13
A
ASP
146
-141.38
34.35
13
A
ASP
164
-159.66
-57.75
13
A
PRO
183
-78.48
27.08
13
A
ARG
185
59.35
129.64
13
A
TYR
197
-135.10
-41.64
13
A
CYS
201
-137.28
-31.82
13
A
ASP
206
47.39
-86.85
13
A
HIS
241
-150.18
12.42
13
A
PRO
252
-73.06
39.21
13
A
VAL
254
49.73
18.75
14
A
VAL
60
63.43
146.30
14
A
ASP
75
-105.00
-96.06
14
A
ILE
76
55.79
163.10
14
A
SER
101
-155.02
17.20
14
A
SER
103
58.01
163.20
14
A
TYR
104
-142.90
10.97
14
A
LYS
108
-159.29
-59.62
14
A
ASP
132
-61.75
98.11
14
A
ILE
144
-134.05
-144.72
14
A
ASP
158
-140.33
25.07
14
A
LEU
184
-155.52
16.32
14
A
TYR
197
-141.05
46.83
14
A
LEU
211
-150.35
3.83
14
A
ALA
217
59.00
173.47
14
A
HIS
241
-141.76
20.62
14
A
GLU
243
54.73
4.31
14
A
VAL
254
53.70
168.77
15
A
ASP
77
-163.39
5.80
15
A
GLU
78
-145.41
-45.71
15
A
ALA
99
55.81
167.44
15
A
SER
101
-141.90
-3.09
15
A
SER
103
55.68
171.06
15
A
PHE
105
-156.28
59.47
15
A
ASP
132
50.93
8.84
15
A
SER
157
-155.34
-36.25
15
A
ASP
158
-140.05
28.73
15
A
LEU
184
-148.02
-75.99
15
A
ARG
185
49.75
132.48
15
A
ASP
206
53.66
-66.77
15
A
HIS
241
-147.59
21.21
15
A
GLU
243
54.85
3.28
15
A
VAL
254
53.17
172.41
16
A
SER
64
-88.51
31.88
16
A
ARG
65
54.62
18.42
16
A
PRO
74
-62.43
0.78
16
A
LYS
98
-48.91
151.44
16
A
LYS
108
-142.76
-58.18
16
A
SER
141
61.48
-172.77
16
A
THR
143
-147.29
42.85
16
A
ILE
144
63.40
-62.20
16
A
LYS
145
-151.99
-62.09
16
A
ARG
152
-160.59
99.49
16
A
ASP
158
-146.37
27.71
16
A
ASP
164
-158.43
-41.16
16
A
SER
166
-141.79
-24.20
16
A
VAL
180
36.68
63.95
16
A
ALA
217
54.59
-175.42
17
A
GLN
55
-142.53
12.22
17
A
ARG
65
-76.60
26.77
17
A
LYS
98
-49.81
151.51
17
A
TYR
104
-75.16
24.29
17
A
LYS
108
-141.16
-69.96
17
A
ASP
132
51.97
9.39
17
A
PRO
142
-72.13
20.08
17
A
ILE
144
55.31
-149.76
17
A
ASP
158
-136.17
-110.44
17
A
SER
159
64.03
-33.40
17
A
ASP
164
-159.72
-44.50
17
A
ARG
182
-149.81
-38.12
17
A
PRO
183
-59.29
-168.75
17
A
LEU
184
65.35
-53.65
17
A
ARG
185
54.18
-163.43
17
A
TYR
197
-140.03
42.65
17
A
HIS
241
48.34
24.14
17
A
ASP
245
-141.58
25.63
18
A
ARG
62
-86.90
31.14
18
A
TYR
63
-142.22
-153.13
18
A
LYS
66
63.47
143.58
18
A
ASP
75
60.90
-85.86
18
A
ASP
77
-149.63
-121.76
18
A
SER
101
47.51
19.13
18
A
LYS
102
-152.94
-35.82
18
A
TYR
104
-153.78
22.70
18
A
LYS
108
-152.28
-38.72
18
A
ASP
132
-30.10
-39.57
18
A
LYS
145
58.20
-57.96
18
A
ASP
146
-149.83
12.72
18
A
MET
163
-140.62
10.42
18
A
ASP
164
-140.30
16.64
18
A
ARG
182
-161.11
-59.20
18
A
LEU
184
-157.59
0.68
18
A
ARG
185
-28.46
120.56
18
A
HIS
241
-148.71
19.26
18
A
GLU
243
55.86
7.39
19
A
SER
64
-141.01
36.37
19
A
LEU
72
54.97
101.50
19
A
PRO
74
-76.80
20.14
19
A
LYS
108
-75.93
33.70
19
A
TYR
110
54.89
-177.25
19
A
ASP
132
54.52
12.45
19
A
ASN
155
-69.31
0.84
19
A
ASP
158
-94.84
31.72
19
A
VAL
177
-104.80
78.66
19
A
ARG
182
-159.80
-75.32
19
A
ARG
185
57.53
95.38
19
A
HIS
241
-147.58
24.68
19
A
GLU
243
56.22
10.86
19
A
ASP
245
-142.80
18.56
20
A
GLU
58
57.31
-175.89
20
A
ARG
62
57.19
-80.66
20
A
TYR
63
53.85
172.16
20
A
ALA
99
49.34
-151.76
20
A
GLU
100
-77.37
39.88
20
A
TYR
104
-142.28
14.92
20
A
PHE
105
-151.90
71.99
20
A
LYS
108
-75.62
37.54
20
A
TYR
110
60.64
166.12
20
A
ASP
132
-61.34
3.34
20
A
SER
141
-141.68
32.60
20
A
ASP
146
57.50
159.47
20
A
LYS
147
-160.05
108.53
20
A
ASP
158
-143.97
29.55
20
A
ASP
164
-154.38
-48.52
20
A
SER
166
-141.08
-16.51
20
A
ARG
182
-160.92
-38.32
20
A
LEU
184
30.20
-106.74
20
A
ARG
185
64.47
136.39
20
A
TYR
197
-140.01
47.70
20
A
ASP
206
-70.76
38.68
20
A
GLU
210
-80.24
40.55
20
A
TYR
213
56.28
-169.60
20
A
HIS
241
-146.09
18.25
20
A
GLU
243
-141.74
10.31
20
A
ASP
245
-146.96
12.44
20
A
VAL
254
45.76
29.01
closest to the average, model3
Solution structure of tandem RRM domains of cytoplasmic polyadenylation element binding protein 4 (CPEB4) in complex with RNA
1
N
N
2
N
N
A
ASP
77
A
ASP
25
HELX_P
A
PHE
85
A
PHE
33
1
1
9
A
ARG
86
A
ARG
34
HELX_P
A
GLY
89
A
GLY
37
5
2
4
A
SER
119
A
SER
67
HELX_P
A
ALA
127
A
ALA
75
1
3
9
A
ARG
185
A
ARG
133
HELX_P
A
TYR
197
A
TYR
145
1
4
13
A
ASN
224
A
ASN
172
HELX_P
A
ILE
232
A
ILE
180
1
5
9
TRANSLATION REGULATOR/RNA
CPEB4, Cytoplasmic polyadenylation, RNA recognition motif (RRM), Protein-RNA Interaction, Translational regulation, TRANSLATION REGULATOR-RNA complex
CPEB4_HUMAN
UNP
1
53
Q17RY0
SHQNGERVERYSRKVFVGGLPPDIDEDEITASFRRFGPLIVDWPHKAESKSYFPPKGYAFLLFQDESSVQALIDACIEED
GKLYLCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGIDTDPELK
YPKGAGRVAFSNQQSYIAAISARFVQLQHGEIDKRVEVKPYVL
2MKI
PDB
2
2MKI
53
255
2MKI
53
255
Q17RY0
A
1
1
203
1
5
2MKI
1
5
2MKI
B
2
1
5
6
5
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ILE
92
A
ILE
40
A
ASP
94
A
ASP
42
A
ALA
111
A
ALA
59
A
LEU
114
A
LEU
62
A
LYS
66
A
LYS
14
A
GLY
70
A
GLY
18
A
VAL
149
A
VAL
97
A
PRO
153
A
PRO
101
A
LYS
134
A
LYS
82
A
LEU
137
A
LEU
85
A
ILE
129
A
ILE
77
A
GLU
131
A
GLU
79
A
ASP
160
A
ASP
108
A
VAL
162
A
VAL
110
A
VAL
200
A
VAL
148
A
ASP
208
A
ASP
156
A
TYR
213
A
TYR
161
A
PHE
222
A
PHE
170
A
THR
174
A
THR
122
A
GLY
178
A
GLY
126
A
GLU
249
A
GLU
197
A
PRO
252
A
PRO
200