1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Filippov, A.V.
Efimov, S.V.
Klochkov, V.V.
Antzutkin, O.N.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
NE
J.Biomol.Nmr
JBNME9
0800
0925-2738
61
227
234
10.1007/s10858-014-9885-4
25430060
High-resolution NMR structure of the antimicrobial peptide protegrin-2 in the presence of DPC micelles.
2015
10.2210/pdb2muh/pdb
pdb_00002muh
1952.426
Protegrin-2
UNP residues 131-146
1
syn
polymer
PG-2
no
no
RGGRLCYCRRRFCVCV
RGGRLCYCRRRFCVCV
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
database_2
pdbx_database_status
pdbx_nmr_software
pdbx_nmr_spectrometer
struct_ref_seq_dif
repository
Initial release
Database references
Data collection
Database references
Other
1
0
2014-12-10
1
1
2015-04-29
1
2
2023-06-14
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_nmr_data
_pdbx_nmr_software.name
_pdbx_nmr_spectrometer.model
_struct_ref_seq_dif.details
BMRB
Y
RCSB
2014-09-10
REL
REL
REL
REL
solid-phase peptide synthesis using amino acids protected by the 9-uorenylmethoxycarbonyl group and with reaction mixture conductivity control.
9823
pigs,swine,wild boar
Sus scrofa
sample
structures with the lowest energy
1000
20
2D 1H-1H NOESY
2D 1H-1H TOCSY
2D 1H-1H COSY
4
mg/mL
20
mg/mL
[U-99% 2H]
293
K
simulated annealing
1
lowest energy
4 mg/mL PG-2, 20 mg/mL [U-99% 2H] DPC, 90% H2O/10% D2O
90% H2O/10% D2O
Goddard
chemical shift assignment
Sparky
Schwieters, Kuszewski, Tjandra and Clore
structure solution
X-PLOR NIH
Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
structure solution
NMRPipe
Koradi, Billeter and Wuthrich
data analysis
MOLMOL
Bruker Biospin
processing
TopSpin
Schwieters, Kuszewski, Tjandra and Clore
refinement
X-PLOR NIH
500
Bruker
AVANCE
Bruker Avance
ARG
1
n
1
ARG
1
A
GLY
2
n
2
GLY
2
A
GLY
3
n
3
GLY
3
A
ARG
4
n
4
ARG
4
A
LEU
5
n
5
LEU
5
A
CYS
6
n
6
CYS
6
A
TYR
7
n
7
TYR
7
A
CYS
8
n
8
CYS
8
A
ARG
9
n
9
ARG
9
A
ARG
10
n
10
ARG
10
A
ARG
11
n
11
ARG
11
A
PHE
12
n
12
PHE
12
A
CYS
13
n
13
CYS
13
A
VAL
14
n
14
VAL
14
A
CYS
15
n
15
CYS
15
A
VAL
16
n
16
VAL
16
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ARG
9
A
N
ARG
9
A
O
PHE
12
A
O
PHE
12
1
A
ARG
4
-167.52
101.95
1
A
ARG
10
57.91
-114.39
2
A
ARG
10
63.28
-110.38
3
A
ARG
4
-92.66
-99.47
3
A
ARG
10
61.92
-126.47
4
A
ARG
10
45.42
-120.44
5
A
ARG
10
54.57
-102.13
6
A
ARG
10
62.61
-100.19
7
A
ARG
10
47.58
-103.24
8
A
ARG
4
-166.05
97.69
8
A
ARG
10
41.74
-124.75
8
A
ARG
11
-108.88
49.84
9
A
ARG
4
-165.87
109.63
9
A
ARG
10
56.03
-117.44
10
A
ARG
10
56.09
-114.51
11
A
ARG
10
46.42
-113.42
11
A
ARG
11
-100.25
43.31
12
A
ARG
10
57.95
-117.12
13
A
ARG
4
-127.54
-52.31
13
A
ARG
9
-111.08
65.98
13
A
ARG
10
54.77
-99.49
13
A
CYS
13
-174.28
124.73
14
A
ARG
4
-152.54
-21.32
14
A
LEU
5
-165.36
112.75
14
A
ARG
10
44.79
-110.12
15
A
ARG
10
46.59
-126.50
15
A
ARG
11
-106.15
45.76
16
A
ARG
10
54.86
-101.20
17
A
ARG
10
64.65
-115.26
18
A
ARG
10
47.89
-127.39
19
A
ARG
10
52.24
-131.22
19
A
ARG
11
-81.60
30.96
20
A
ARG
10
44.90
-119.12
High-resolution NMR structure of the protegrin-2 docked to DPC Micelles
1
N
N
disulf
2.020
A
CYS
6
A
SG
CYS
6
1_555
A
CYS
15
A
SG
CYS
15
1_555
disulf
2.023
A
CYS
8
A
SG
CYS
8
1_555
A
CYS
13
A
SG
CYS
13
1_555
ANTIMICROBIAL PROTEIN
Protegrin, ANTIMICROBIAL PROTEIN
PG2_PIG
UNP
1
131
P32195
RGGRLCYCRRRFCICV
131
146
2MUH
1
16
P32195
A
1
1
16
1
ILE
conflict
VAL
14
2MUH
A
P32195
UNP
144
14
2
anti-parallel
A
CYS
6
A
CYS
6
A
ARG
9
A
ARG
9
A
PHE
12
A
PHE
12
A
CYS
15
A
CYS
15