1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Proudfoot, A.
Serrano, P.
Geralt, M.
Wuthrich, K.
Joint Center for Structural Genomics (JCSG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be Published
0353
NMR structure of the protein NP_809137.1 from Bacteroides thetaiotaomicron
10.2210/pdb2mw1/pdb
pdb_00002mw1
13189.693
Lipocalin-like protein
Residues 18-134
1
man
polymer
no
no
GCELSDPDGLADPMKWSKVPSGLKNGELKVEAEGGSSLFACKNYKSFWISSVKEEGKFKENTSYKEFDGGWYLVKIEDNE
LKVIINRNETNASRSFTVCVEAGNAFDEFKFVQDAAKQ
GCELSDPDGLADPMKWSKVPSGLKNGELKVEAEGGSSLFACKNYKSFWISSVKEEGKFKENTSYKEFDGGWYLVKIEDNE
LKVIINRNETNASRSFTVCVEAGNAFDEFKFVQDAAKQ
A
JCSG-417788
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482
sample
BT_0224
226186
Bacteroides thetaiotaomicron VPI-5482
562
Escherichia coli
Pspeedet
Joint Center for Structural Genomics
JCSG
PSI:Biology
database_2
pdbx_database_status
pdbx_nmr_software
pdbx_nmr_spectrometer
struct_ref_seq_dif
repository
Initial release
Data collection
Database references
Other
1
0
2014-11-12
1
1
2023-06-14
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_nmr_data
_pdbx_nmr_software.name
_pdbx_nmr_spectrometer.model
_struct_ref_seq_dif.details
Y
BMRB
Y
RCSB
2014-10-27
REL
REL
REL
REL
target function
80
20
2D 1H-15N HSQC
3D 1H-13C NOESY aliphatic
3D 1H-13C NOESY aromatic
3D 1H-15N NOESY
APSY 4D-HACANH
APSY 5D-CBCACONH
APSY 5D-HACACONH
1.2
mM
[U-98% 13C; U-98% 15N]
50
mM
20
mM
5
mM
5
mM
[U-99% 2H]
0.220
6.0
ambient
298
K
molecular dynamics
1
closest to the average
1.2 mM [U-98% 13C; U-98% 15N] protein, 50 mM sodium chloride, 20 mM sodium phosphate, 5 mM sodium azide, 5 mM [U-99% 2H] DTT, 95% H2O/5% D2O
95% H2O/5% D2O
Herrmann, Guntert and Wuthrich
refinement
CYANA
Luginbuhl, Guntert, Billeter and Wuthrich
refinement
OPAL
Bruker Biospin
collection
TopSpin
Bruker Biospin
processing
TopSpin
Keller and Wuthrich
chemical shift assignment
CARA
Herrmann and Wuthrich
chemical shift assignment
UNIO
Herrmann and Wuthrich
structure solution
UNIO
Maxim Mayzel, Vladislav Orekhov
processing
MddNMR
Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
processing
NMRDraw
600
Bruker
AVANCE
Bruker Avance
800
Bruker
AVANCE
Bruker Avance
GLY
1
n
1
GLY
1
A
CYS
2
n
2
CYS
2
A
GLU
3
n
3
GLU
3
A
LEU
4
n
4
LEU
4
A
SER
5
n
5
SER
5
A
ASP
6
n
6
ASP
6
A
PRO
7
n
7
PRO
7
A
ASP
8
n
8
ASP
8
A
GLY
9
n
9
GLY
9
A
LEU
10
n
10
LEU
10
A
ALA
11
n
11
ALA
11
A
ASP
12
n
12
ASP
12
A
PRO
13
n
13
PRO
13
A
MET
14
n
14
MET
14
A
LYS
15
n
15
LYS
15
A
TRP
16
n
16
TRP
16
A
SER
17
n
17
SER
17
A
LYS
18
n
18
LYS
18
A
VAL
19
n
19
VAL
19
A
PRO
20
n
20
PRO
20
A
SER
21
n
21
SER
21
A
GLY
22
n
22
GLY
22
A
LEU
23
n
23
LEU
23
A
LYS
24
n
24
LYS
24
A
ASN
25
n
25
ASN
25
A
GLY
26
n
26
GLY
26
A
GLU
27
n
27
GLU
27
A
LEU
28
n
28
LEU
28
A
LYS
29
n
29
LYS
29
A
VAL
30
n
30
VAL
30
A
GLU
31
n
31
GLU
31
A
ALA
32
n
32
ALA
32
A
GLU
33
n
33
GLU
33
A
GLY
34
n
34
GLY
34
A
GLY
35
n
35
GLY
35
A
SER
36
n
36
SER
36
A
SER
37
n
37
SER
37
A
LEU
38
n
38
LEU
38
A
PHE
39
n
39
PHE
39
A
ALA
40
n
40
ALA
40
A
CYS
41
n
41
CYS
41
A
LYS
42
n
42
LYS
42
A
ASN
43
n
43
ASN
43
A
TYR
44
n
44
TYR
44
A
LYS
45
n
45
LYS
45
A
SER
46
n
46
SER
46
A
PHE
47
n
47
PHE
47
A
TRP
48
n
48
TRP
48
A
ILE
49
n
49
ILE
49
A
SER
50
n
50
SER
50
A
SER
51
n
51
SER
51
A
VAL
52
n
52
VAL
52
A
LYS
53
n
53
LYS
53
A
GLU
54
n
54
GLU
54
A
GLU
55
n
55
GLU
55
A
GLY
56
n
56
GLY
56
A
LYS
57
n
57
LYS
57
A
PHE
58
n
58
PHE
58
A
LYS
59
n
59
LYS
59
A
GLU
60
n
60
GLU
60
A
ASN
61
n
61
ASN
61
A
THR
62
n
62
THR
62
A
SER
63
n
63
SER
63
A
TYR
64
n
64
TYR
64
A
LYS
65
n
65
LYS
65
A
GLU
66
n
66
GLU
66
A
PHE
67
n
67
PHE
67
A
ASP
68
n
68
ASP
68
A
GLY
69
n
69
GLY
69
A
GLY
70
n
70
GLY
70
A
TRP
71
n
71
TRP
71
A
TYR
72
n
72
TYR
72
A
LEU
73
n
73
LEU
73
A
VAL
74
n
74
VAL
74
A
LYS
75
n
75
LYS
75
A
ILE
76
n
76
ILE
76
A
GLU
77
n
77
GLU
77
A
ASP
78
n
78
ASP
78
A
ASN
79
n
79
ASN
79
A
GLU
80
n
80
GLU
80
A
LEU
81
n
81
LEU
81
A
LYS
82
n
82
LYS
82
A
VAL
83
n
83
VAL
83
A
ILE
84
n
84
ILE
84
A
ILE
85
n
85
ILE
85
A
ASN
86
n
86
ASN
86
A
ARG
87
n
87
ARG
87
A
ASN
88
n
88
ASN
88
A
GLU
89
n
89
GLU
89
A
THR
90
n
90
THR
90
A
ASN
91
n
91
ASN
91
A
ALA
92
n
92
ALA
92
A
SER
93
n
93
SER
93
A
ARG
94
n
94
ARG
94
A
SER
95
n
95
SER
95
A
PHE
96
n
96
PHE
96
A
THR
97
n
97
THR
97
A
VAL
98
n
98
VAL
98
A
CYS
99
n
99
CYS
99
A
VAL
100
n
100
VAL
100
A
GLU
101
n
101
GLU
101
A
ALA
102
n
102
ALA
102
A
GLY
103
n
103
GLY
103
A
ASN
104
n
104
ASN
104
A
ALA
105
n
105
ALA
105
A
PHE
106
n
106
PHE
106
A
ASP
107
n
107
ASP
107
A
GLU
108
n
108
GLU
108
A
PHE
109
n
109
PHE
109
A
LYS
110
n
110
LYS
110
A
PHE
111
n
111
PHE
111
A
VAL
112
n
112
VAL
112
A
GLN
113
n
113
GLN
113
A
ASP
114
n
114
ASP
114
A
ALA
115
n
115
ALA
115
A
ALA
116
n
116
ALA
116
A
LYS
117
n
117
LYS
117
A
GLN
118
n
118
GLN
118
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
SER
17
A
N
SER
17
A
O
ALA
40
A
O
ALA
40
A
N
PHE
39
A
N
PHE
39
A
O
LEU
81
A
O
LEU
81
A
O
GLU
80
A
O
GLU
80
A
N
GLU
77
A
N
GLU
77
A
O
VAL
74
A
O
VAL
74
A
N
PHE
67
A
N
PHE
67
A
N
LYS
24
A
N
LYS
24
A
O
GLU
27
A
O
GLU
27
A
N
VAL
30
A
N
VAL
30
A
O
VAL
112
A
O
VAL
112
A
O
PHE
109
A
O
PHE
109
A
N
VAL
98
A
N
VAL
98
A
O
CYS
99
A
O
CYS
99
A
N
SER
50
A
N
SER
50
A
N
VAL
52
A
N
VAL
52
A
O
LYS
59
A
O
LYS
59
1
A
A
SER
SER
50
51
148.40
3
A
A
GLY
CYS
1
2
149.86
3
A
A
GLU
PHE
66
67
138.41
4
A
A
GLU
GLU
54
55
-147.12
4
A
A
GLU
PHE
66
67
144.25
8
A
A
SER
LYS
17
18
143.83
13
A
A
LYS
SER
45
46
-146.79
15
A
A
PHE
THR
96
97
147.82
16
A
A
GLY
CYS
1
2
-138.94
17
A
A
CYS
VAL
99
100
144.69
7
A
ARG
94
0.078
SIDE CHAIN
8
A
ARG
87
0.141
SIDE CHAIN
11
A
ARG
94
0.090
SIDE CHAIN
14
A
ARG
87
0.086
SIDE CHAIN
16
A
TYR
72
0.075
SIDE CHAIN
16
A
ARG
87
0.086
SIDE CHAIN
18
A
TYR
44
0.075
SIDE CHAIN
19
A
ARG
87
0.077
SIDE CHAIN
1
-3.23
0.50
120.30
117.07
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
87
87
87
N
3
9.83
1.50
110.90
120.73
A
A
A
CA
CB
CG1
VAL
VAL
VAL
30
30
30
N
6
-3.60
0.50
120.30
116.70
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
94
94
94
N
16
14.08
1.50
110.90
124.98
A
A
A
CA
CB
CG2
VAL
VAL
VAL
30
30
30
N
1
A
CYS
2
55.34
-13.69
1
A
ALA
32
-74.18
28.17
1
A
GLU
55
-155.30
38.22
1
A
ASP
78
58.50
-78.60
1
A
ASN
91
-63.79
22.43
2
A
ASP
6
-115.59
66.96
2
A
LEU
23
-54.60
103.88
2
A
ALA
32
-67.30
2.70
2
A
GLU
54
-145.66
-6.15
2
A
LYS
59
-113.77
-167.16
2
A
LYS
65
-155.74
-12.88
2
A
ASP
78
58.30
-153.98
2
A
GLU
80
-109.95
79.51
3
A
GLU
3
-156.46
68.81
3
A
ASP
8
-152.05
-11.15
3
A
LEU
10
-65.70
-177.72
3
A
GLU
54
-143.54
-2.26
3
A
GLU
55
-154.15
27.01
3
A
LYS
65
-146.86
-9.60
3
A
ASN
79
-147.14
25.84
3
A
ASN
91
-66.21
2.82
4
A
CYS
2
60.43
85.17
4
A
GLU
3
56.80
174.85
4
A
ASP
6
-149.74
54.50
4
A
SER
17
-141.65
15.08
4
A
GLU
55
-145.13
14.89
4
A
TRP
71
-67.19
0.39
4
A
ASP
78
48.85
-84.92
5
A
LEU
4
53.54
-154.60
5
A
SER
5
-142.43
20.54
5
A
ASP
8
-145.18
34.33
5
A
SER
46
-179.34
83.80
5
A
LYS
59
-113.59
-157.56
5
A
ASP
78
44.45
-87.43
5
A
LYS
117
-112.60
76.10
6
A
GLU
3
54.94
-163.76
6
A
ALA
32
-77.25
44.11
6
A
ASN
43
-140.21
-7.80
6
A
SER
46
175.31
78.22
6
A
GLU
55
-149.13
25.38
6
A
ASP
78
45.96
-86.14
7
A
ASN
43
-140.99
-51.31
7
A
SER
46
-162.60
66.76
7
A
LYS
65
177.52
-5.33
7
A
ASP
78
44.71
-86.51
7
A
ASN
79
-141.16
55.19
8
A
ASP
6
-119.83
64.12
8
A
LYS
45
-142.65
48.41
8
A
SER
46
-179.38
85.64
8
A
SER
50
-140.76
-8.15
8
A
GLU
54
-153.12
-13.71
8
A
THR
62
-142.85
-4.49
8
A
ASP
78
74.82
-66.60
8
A
ASN
91
-92.45
52.12
9
A
ASP
6
-113.57
79.54
9
A
ALA
32
-80.78
40.51
9
A
LYS
45
-81.74
39.63
9
A
SER
46
-148.02
32.10
9
A
GLU
55
-153.11
46.29
9
A
LYS
65
-168.78
-2.19
9
A
ASP
78
65.77
-79.71
9
A
ASN
79
-147.98
12.12
9
A
ALA
102
-136.05
-159.84
10
A
ASP
8
-90.50
45.64
10
A
LYS
42
-94.57
34.84
10
A
ASN
43
-171.07
-6.85
10
A
TYR
44
-153.04
82.70
10
A
GLU
54
-142.83
-10.75
10
A
GLU
55
-147.50
33.56
10
A
ASP
78
44.71
-79.92
10
A
ASN
79
-154.95
19.22
10
A
GLU
89
-82.67
36.96
11
A
CYS
2
-136.81
-49.01
11
A
GLU
3
62.07
66.08
11
A
ASP
8
-159.40
-2.30
11
A
LEU
23
-57.82
105.24
11
A
ALA
32
-68.46
11.05
11
A
LYS
45
-143.38
40.83
11
A
SER
46
-150.56
36.61
11
A
GLU
55
-147.26
25.53
11
A
LYS
65
-162.46
5.14
11
A
ASP
78
66.66
-81.78
11
A
ASN
91
-64.98
24.10
12
A
CYS
2
-154.67
-75.26
12
A
GLU
3
63.93
-175.04
12
A
ASP
6
-118.92
61.33
12
A
ASP
8
-140.67
24.88
12
A
ALA
11
-179.32
32.09
12
A
LYS
24
-84.61
-154.42
12
A
ASN
25
-53.06
21.10
12
A
LYS
45
-143.68
58.22
12
A
SER
46
-176.18
87.21
12
A
GLU
54
-140.50
-7.61
12
A
THR
62
-150.56
8.99
12
A
LYS
65
-155.02
-18.87
12
A
ASP
78
45.23
-86.29
12
A
ASN
79
-152.28
2.82
13
A
ASN
25
62.71
-27.37
13
A
ALA
32
-64.20
32.77
13
A
GLU
33
-132.30
-40.41
13
A
SER
46
-169.11
47.74
13
A
GLU
55
-153.05
46.72
13
A
TYR
64
-99.50
31.91
13
A
LYS
65
-162.71
-10.87
13
A
ASP
78
64.73
-66.61
13
A
ASN
79
-160.47
5.67
14
A
ASP
8
-159.66
23.58
14
A
ASN
25
59.34
12.24
14
A
LYS
42
-96.84
36.07
14
A
ASN
43
-149.89
-28.98
14
A
GLU
55
-150.58
32.17
14
A
LYS
59
-130.59
-156.18
14
A
LYS
65
-156.20
-35.81
14
A
ASP
78
66.49
-76.11
14
A
ALA
102
-142.60
39.46
15
A
GLU
54
-140.53
-10.41
15
A
LYS
59
-123.13
-160.09
15
A
THR
62
-143.94
-3.33
15
A
SER
63
-170.09
136.05
15
A
LYS
65
-143.83
-6.50
15
A
ASP
78
54.77
-85.34
15
A
LYS
117
-97.26
52.09
16
A
CYS
2
66.40
120.50
16
A
SER
17
-140.01
23.78
16
A
ASN
25
49.73
24.54
16
A
ALA
32
-67.81
1.38
16
A
SER
46
-151.33
67.65
16
A
GLU
54
-156.02
21.82
16
A
GLU
55
-157.35
39.34
16
A
ASP
78
64.21
-72.26
16
A
LYS
117
-118.05
71.00
17
A
ASP
6
-115.68
74.38
17
A
GLU
55
-148.06
34.45
17
A
THR
62
-155.30
-0.13
17
A
TRP
71
-69.69
0.30
17
A
ASP
78
62.71
-83.83
17
A
ASN
79
-147.87
20.60
18
A
CYS
2
-125.44
-56.11
18
A
LYS
45
-141.36
34.45
18
A
SER
46
-172.25
100.08
18
A
GLU
54
-142.86
-5.97
18
A
GLU
77
-127.68
-164.66
18
A
ASN
79
-146.89
-1.44
19
A
ASP
8
-166.05
39.73
19
A
ALA
32
-74.38
44.10
19
A
GLU
33
-140.11
-28.31
19
A
SER
46
-176.50
89.61
19
A
SER
50
-141.41
-3.72
19
A
GLU
55
-153.85
38.88
19
A
ASP
78
44.50
-86.31
20
A
LEU
10
-70.98
-168.83
20
A
SER
17
-142.22
13.39
20
A
ASN
25
57.87
17.03
20
A
LYS
45
-143.69
30.87
20
A
SER
46
-171.32
127.03
20
A
GLU
54
-152.57
9.29
20
A
GLU
55
-168.21
31.05
20
A
LYS
65
-141.09
-4.30
20
A
GLU
77
-105.52
-165.84
20
A
ASN
79
-147.51
20.89
20
A
ASN
104
-75.72
35.28
closest to the average, model6
NMR structure of the protein NP_809137.1 from Bacteroides thetaiotaomicron
1
N
N
Structural genomics, Unknown Function
Structural genomics, Unknown Function, PSI-Biology, Joint Center for Structural Genomics, JCSG
Q8AB86_BACTN
UNP
1
18
Q8AB86
CELSDPDGLADPMKWSKVPSGLKNGELKVEAEGGSSLFACKNYKSFWISSVKEEGKFKENTSYKEFDGGWYLVKIEDNEL
KVIINRNETNASRSFTVCVEAGNAFDEFKFVQDAAKQ
18
134
2MW1
2
118
Q8AB86
A
1
2
118
1
expression tag
GLY
1
2MW1
A
Q8AB86
UNP
1
5
6
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
A
TRP
16
A
TRP
16
A
LYS
18
A
LYS
18
A
SER
36
A
SER
36
A
CYS
41
A
CYS
41
A
GLU
80
A
GLU
80
A
ILE
84
A
ILE
84
A
LEU
73
A
LEU
73
A
GLU
77
A
GLU
77
A
GLU
66
A
GLU
66
A
ASP
68
A
ASP
68
A
LEU
23
A
LEU
23
A
LYS
24
A
LYS
24
A
GLU
27
A
GLU
27
A
VAL
30
A
VAL
30
A
PHE
106
A
PHE
106
A
GLN
113
A
GLN
113
A
ARG
94
A
ARG
94
A
GLU
101
A
GLU
101
A
TRP
48
A
TRP
48
A
LYS
53
A
LYS
53
A
PHE
58
A
PHE
58
A
LYS
59
A
LYS
59