1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Kumar, D.
Jaiswal, N.
Raikwal, N.
Shukla, V.
Arora, A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be Published
0353
Prot3DNMR: A simple and swift NMR strategy for Three-Dimentional structutral determination of proteins.
10.2210/pdb2mw5/pdb
pdb_00002mw5
11149.545
Small ubiquitin-related modifier 1
1
man
polymer
SUMO-1, GAP-modifying protein 1, GMP1, SMT3 homolog 3, Sentrin, Ubiquitin-homology domain protein PIC1, Ubiquitin-like protein SMT3C, Smt3C, Ubiquitin-like protein UBL1
no
no
MSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKEL
GMEEEDVIEVYQEQTGG
MSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKEL
GMEEEDVIEVYQEQTGG
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
SUMO1, SMT3C, SMT3H3, UBL1, OK/SW-cl.43
9606
Homo sapiens
562
Escherichia coli
BL21 Lambda DE3
pQE80L
vector
database_2
pdbx_database_status
pdbx_nmr_spectrometer
repository
Initial release
Structure summary
Data collection
Database references
Other
1
0
2014-12-03
1
1
2014-12-10
1
2
2023-06-14
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_nmr_data
_pdbx_nmr_spectrometer.model
BMRB
Y
PDBJ
2014-10-28
REL
REL
REL
REL
509
122
66
66
3.73
target function
200
10
5
6.9
7
1
Talos Plus
0.66
0.13
2D 1H-15N HSQC
3D 1H-15N TOCSY
3D HNCO
3D HNCA
3D H(CCO)NH
3D 1H-13C NOESY
3D 1H-15N NOESY
0.8-1
mM
[U-100% 13C; U-100% 15N]
20
6.5
ambient
298
K
distance geometry
1
lowest energy
0.8-1 mM [U-100% 13C; U-100% 15N] sodium phosphate-1, 90% H2O/10% D2O
90% H2O/10% D2O
Keller and Wuthrich
chemical shift assignment
CARA
9.8
refinement
CYANA
800
Bruker
AVANCE
Bruker Avance
MET
4
n
1
MET
4
A
SER
5
n
2
SER
5
A
ASP
6
n
3
ASP
6
A
GLN
7
n
4
GLN
7
A
GLU
8
n
5
GLU
8
A
ALA
9
n
6
ALA
9
A
LYS
10
n
7
LYS
10
A
PRO
11
n
8
PRO
11
A
SER
12
n
9
SER
12
A
THR
13
n
10
THR
13
A
GLU
14
n
11
GLU
14
A
ASP
15
n
12
ASP
15
A
LEU
16
n
13
LEU
16
A
GLY
17
n
14
GLY
17
A
ASP
18
n
15
ASP
18
A
LYS
19
n
16
LYS
19
A
LYS
20
n
17
LYS
20
A
GLU
21
n
18
GLU
21
A
GLY
22
n
19
GLY
22
A
GLU
23
n
20
GLU
23
A
TYR
24
n
21
TYR
24
A
ILE
25
n
22
ILE
25
A
LYS
26
n
23
LYS
26
A
LEU
27
n
24
LEU
27
A
LYS
28
n
25
LYS
28
A
VAL
29
n
26
VAL
29
A
ILE
30
n
27
ILE
30
A
GLY
31
n
28
GLY
31
A
GLN
32
n
29
GLN
32
A
ASP
33
n
30
ASP
33
A
SER
34
n
31
SER
34
A
SER
35
n
32
SER
35
A
GLU
36
n
33
GLU
36
A
ILE
37
n
34
ILE
37
A
HIS
38
n
35
HIS
38
A
PHE
39
n
36
PHE
39
A
LYS
40
n
37
LYS
40
A
VAL
41
n
38
VAL
41
A
LYS
42
n
39
LYS
42
A
MET
43
n
40
MET
43
A
THR
44
n
41
THR
44
A
THR
45
n
42
THR
45
A
HIS
46
n
43
HIS
46
A
LEU
47
n
44
LEU
47
A
LYS
48
n
45
LYS
48
A
LYS
49
n
46
LYS
49
A
LEU
50
n
47
LEU
50
A
LYS
51
n
48
LYS
51
A
GLU
52
n
49
GLU
52
A
SER
53
n
50
SER
53
A
TYR
54
n
51
TYR
54
A
CYS
55
n
52
CYS
55
A
GLN
56
n
53
GLN
56
A
ARG
57
n
54
ARG
57
A
GLN
58
n
55
GLN
58
A
GLY
59
n
56
GLY
59
A
VAL
60
n
57
VAL
60
A
PRO
61
n
58
PRO
61
A
MET
62
n
59
MET
62
A
ASN
63
n
60
ASN
63
A
SER
64
n
61
SER
64
A
LEU
65
n
62
LEU
65
A
ARG
66
n
63
ARG
66
A
PHE
67
n
64
PHE
67
A
LEU
68
n
65
LEU
68
A
PHE
69
n
66
PHE
69
A
GLU
70
n
67
GLU
70
A
GLY
71
n
68
GLY
71
A
GLN
72
n
69
GLN
72
A
ARG
73
n
70
ARG
73
A
ILE
74
n
71
ILE
74
A
ALA
75
n
72
ALA
75
A
ASP
76
n
73
ASP
76
A
ASN
77
n
74
ASN
77
A
HIS
78
n
75
HIS
78
A
THR
79
n
76
THR
79
A
PRO
80
n
77
PRO
80
A
LYS
81
n
78
LYS
81
A
GLU
82
n
79
GLU
82
A
LEU
83
n
80
LEU
83
A
GLY
84
n
81
GLY
84
A
MET
85
n
82
MET
85
A
GLU
86
n
83
GLU
86
A
GLU
87
n
84
GLU
87
A
GLU
88
n
85
GLU
88
A
ASP
89
n
86
ASP
89
A
VAL
90
n
87
VAL
90
A
ILE
91
n
88
ILE
91
A
GLU
92
n
89
GLU
92
A
VAL
93
n
90
VAL
93
A
TYR
94
n
91
TYR
94
A
GLN
95
n
92
GLN
95
A
GLU
96
n
93
GLU
96
A
GLN
97
n
94
GLN
97
A
THR
98
n
95
THR
98
A
GLY
99
n
96
GLY
99
A
GLY
100
n
97
GLY
100
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
GLN
72
A
O
GLN
69
A
N
PHE
69
A
N
PHE
66
A
N
LEU
68
A
N
LEU
65
A
O
GLU
92
A
O
GLU
89
1
4.43
0.50
120.30
124.73
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
57
57
57
N
1
3.69
0.50
120.30
123.99
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
66
66
66
N
1
4.50
0.50
120.30
124.80
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
73
73
73
N
2
4.15
0.50
120.30
124.45
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
57
57
57
N
2
3.57
0.50
120.30
123.87
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
66
66
66
N
2
3.94
0.50
120.30
124.24
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
73
73
73
N
3
3.86
0.50
120.30
124.16
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
57
57
57
N
3
3.28
0.50
120.30
123.58
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
66
66
66
N
3
3.52
0.50
120.30
123.82
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
73
73
73
N
4
3.10
0.50
120.30
123.40
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
57
57
57
N
4
3.92
0.50
120.30
124.22
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
66
66
66
N
4
4.21
0.50
120.30
124.51
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
73
73
73
N
5
4.06
0.50
120.30
124.36
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
57
57
57
N
5
4.31
0.50
120.30
124.61
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
73
73
73
N
6
3.92
0.50
120.30
124.22
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
57
57
57
N
6
4.47
0.50
120.30
124.77
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
66
66
66
N
6
4.42
0.50
120.30
124.72
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
73
73
73
N
7
3.27
0.50
120.30
123.57
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
57
57
57
N
7
4.13
0.50
120.30
124.43
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
66
66
66
N
7
4.17
0.50
120.30
124.47
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
73
73
73
N
8
3.69
0.50
120.30
123.99
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
57
57
57
N
8
3.53
0.50
120.30
123.83
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
66
66
66
N
8
4.10
0.50
120.30
124.40
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
73
73
73
N
9
3.60
0.50
120.30
123.90
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
57
57
57
N
9
4.03
0.50
120.30
124.33
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
66
66
66
N
9
4.16
0.50
120.30
124.46
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
73
73
73
N
10
4.21
0.50
120.30
124.51
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
57
57
57
N
10
4.62
0.50
120.30
124.92
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
66
66
66
N
10
3.27
0.50
120.30
123.57
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
73
73
73
N
1
A
LYS
40
-81.26
40.43
1
A
ASN
63
-69.52
0.59
2
A
ASP
18
-86.00
49.28
2
A
GLU
86
60.02
-40.13
2
A
GLU
87
-130.39
-57.65
3
A
GLU
21
60.15
-23.39
3
A
GLU
87
-148.51
-54.52
4
A
GLU
21
57.01
13.87
4
A
GLN
32
60.87
-52.16
4
A
GLU
86
64.72
-26.96
5
A
SER
12
59.10
16.78
5
A
GLU
21
56.01
-159.96
5
A
GLU
88
62.08
160.75
5
A
ASP
89
-134.50
-80.83
6
A
GLU
14
63.70
-33.10
6
A
GLU
86
61.87
-38.21
7
A
SER
12
54.27
18.49
7
A
LYS
28
-118.85
72.84
7
A
GLU
86
66.58
174.67
8
A
ASP
18
59.41
-67.64
8
A
LYS
40
-69.88
98.80
8
A
GLU
86
62.38
-18.02
9
A
GLU
86
61.97
-40.64
10
A
LYS
19
64.49
-36.47
10
A
GLU
21
56.48
-162.45
10
A
GLU
86
38.83
-80.04
10
A
GLU
88
56.75
171.53
10
A
ASP
89
-147.56
-22.80
lowest energy, model1
Backbone fold of Human Small Ubiquitin like Modifier protein-1 (SUMO-1) based on Prot3D-NMR approach.
1
N
N
A
HIS
46
A
HIS
43
HELX_P
A
GLY
59
A
GLY
56
1
1
14
A
PRO
61
A
PRO
58
HELX_P
A
ASN
63
A
ASN
60
5
2
3
A
THR
79
A
THR
76
HELX_P
A
GLY
84
A
GLY
81
1
3
6
PROTEIN BINDING
human SUMO, Small Ubiquitin like Modifier, SUMO-1, PROTEIN BINDING
SUMO1_HUMAN
UNP
1
1
P63165
MSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKEL
GMEEEDVIEVYQEQTGG
1
97
2MW5
4
100
P63165
A
1
1
97
3
anti-parallel
anti-parallel
A
GLN
72
A
GLN
69
A
ARG
73
A
ARG
70
A
LEU
65
A
LEU
62
A
PHE
69
A
PHE
66
A
GLU
92
A
GLU
89
A
GLN
95
A
GLN
92
1
P 1