1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Usachev, K.S. Efimov, S.V. Kolosova, O.A. Klochkova, E.A. Aganov, A.V. Klochkov, V.V. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking NE J.Biomol.Nmr JBNME9 0800 0925-2738 62 71 79 10.1007/s10858-015-9920-0 25786621 Antimicrobial peptide protegrin-3 adopt an antiparallel dimer in the presence of DPC micelles: a high-resolution NMR study. 2015 10.2210/pdb2mz6/pdb pdb_00002mz6 2066.530 Protegrin-3 UNP residues 131-148 2 syn polymer PG-3 no no RGGGLCYCRRRFCVCVGR RGGGLCYCRRRFCVCVGR A,B polypeptide(L) n n n n n n n n n n n n n n n n n n database_2 pdbx_database_status pdbx_nmr_software pdbx_nmr_spectrometer repository Initial release Database references Database references Data collection Database references Other 1 0 2015-03-25 1 1 2015-04-01 1 2 2015-05-27 1 3 2023-06-14 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.status_code_nmr_data _pdbx_nmr_software.name _pdbx_nmr_spectrometer.model BMRB Y RCSB 2015-02-06 REL REL REL REL 9823 pigs,swine,wild boar Sus scrofa sample back calculated data agree with experimental NOESY spectrum 50 1 2D DQF-COSY 2D 1H-1H COSY 2D 1H-1H TOCSY 2D 1H-1H NOESY 2D 1H-15N HSQC 2D 1H-13C HSQC 3 mg/mL 20 mg/mL [U-99% 2H] 0.01 % [U-99% 2H] ambient 293 K distance geometry, simulated annealing 1 fewest violations 3 mg/mL peptide, 20 mg/mL [U-99% 2H] DPC, 0.01 % [U-99% 2H] TSP, 90% H2O/10% D2O 90% H2O/10% D2O Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax processing NMRPipe Goddard peak picking Sparky Goddard chemical shift assignment Sparky Schwieters, Kuszewski, Tjandra and Clore structure solution X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore refinement X-PLOR NIH 700 Bruker AVANCE Bruker Avance ARG 1 n 1 ARG 1 A GLY 2 n 2 GLY 2 A GLY 3 n 3 GLY 3 A GLY 4 n 4 GLY 4 A LEU 5 n 5 LEU 5 A CYS 6 n 6 CYS 6 A TYR 7 n 7 TYR 7 A CYS 8 n 8 CYS 8 A ARG 9 n 9 ARG 9 A ARG 10 n 10 ARG 10 A ARG 11 n 11 ARG 11 A PHE 12 n 12 PHE 12 A CYS 13 n 13 CYS 13 A VAL 14 n 14 VAL 14 A CYS 15 n 15 CYS 15 A VAL 16 n 16 VAL 16 A GLY 17 n 17 GLY 17 A ARG 18 n 18 ARG 18 A ARG 1 n 1 ARG 1 B GLY 2 n 2 GLY 2 B GLY 3 n 3 GLY 3 B GLY 4 n 4 GLY 4 B LEU 5 n 5 LEU 5 B CYS 6 n 6 CYS 6 B TYR 7 n 7 TYR 7 B CYS 8 n 8 CYS 8 B ARG 9 n 9 ARG 9 B ARG 10 n 10 ARG 10 B ARG 11 n 11 ARG 11 B PHE 12 n 12 PHE 12 B CYS 13 n 13 CYS 13 B VAL 14 n 14 VAL 14 B CYS 15 n 15 CYS 15 B VAL 16 n 16 VAL 16 B GLY 17 n 17 GLY 17 B ARG 18 n 18 ARG 18 B author_and_software_defined_assembly PISA 2 dimeric 560 -1 4000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N TYR 7 A N TYR 7 A O VAL 14 A O VAL 14 A N CYS 15 A N CYS 15 B O CYS 15 B O CYS 15 B O VAL 14 B O VAL 14 B N TYR 7 B N TYR 7 1 A ARG 10 52.84 -129.05 1 A ARG 11 -109.29 47.11 1 B ARG 10 52.52 -129.53 1 B ARG 11 -109.97 41.73 NMR structure of Protegrin-3 (PG3) in the presence of DPC micelles 1 N N 1 N N disulf 2.020 A CYS 6 A SG CYS 6 1_555 A CYS 15 A SG CYS 15 1_555 disulf 2.020 A CYS 8 A SG CYS 8 1_555 A CYS 13 A SG CYS 13 1_555 disulf 2.021 B CYS 6 B SG CYS 6 1_555 B CYS 15 B SG CYS 15 1_555 disulf 2.021 B CYS 8 B SG CYS 8 1_555 B CYS 13 B SG CYS 13 1_555 ANTIMICROBIAL PROTEIN Protegrin, antimicrobial protein, DPC micelle, dimer PG3_PIG UNP 1 131 P32196 RGGGLCYCRRRFCVCVGR 131 148 2MZ6 1 18 P32196 A 1 1 18 131 148 2MZ6 1 18 P32196 B 1 1 18 4 anti-parallel anti-parallel anti-parallel A LEU 5 A LEU 5 A ARG 9 A ARG 9 A PHE 12 A PHE 12 A GLY 17 A GLY 17 B PHE 12 B PHE 12 B GLY 17 B GLY 17 B GLY 4 B GLY 4 B ARG 9 B ARG 9