1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Usachev, K.S.
Efimov, S.V.
Kolosova, O.A.
Klochkova, E.A.
Aganov, A.V.
Klochkov, V.V.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
NE
J.Biomol.Nmr
JBNME9
0800
0925-2738
62
71
79
10.1007/s10858-015-9920-0
25786621
Antimicrobial peptide protegrin-3 adopt an antiparallel dimer in the presence of DPC micelles: a high-resolution NMR study.
2015
10.2210/pdb2mz6/pdb
pdb_00002mz6
2066.530
Protegrin-3
UNP residues 131-148
2
syn
polymer
PG-3
no
no
RGGGLCYCRRRFCVCVGR
RGGGLCYCRRRFCVCVGR
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
database_2
pdbx_database_status
pdbx_nmr_software
pdbx_nmr_spectrometer
repository
Initial release
Database references
Database references
Data collection
Database references
Other
1
0
2015-03-25
1
1
2015-04-01
1
2
2015-05-27
1
3
2023-06-14
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_nmr_data
_pdbx_nmr_software.name
_pdbx_nmr_spectrometer.model
BMRB
Y
RCSB
2015-02-06
REL
REL
REL
REL
9823
pigs,swine,wild boar
Sus scrofa
sample
back calculated data agree with experimental NOESY spectrum
50
1
2D DQF-COSY
2D 1H-1H COSY
2D 1H-1H TOCSY
2D 1H-1H NOESY
2D 1H-15N HSQC
2D 1H-13C HSQC
3
mg/mL
20
mg/mL
[U-99% 2H]
0.01
%
[U-99% 2H]
ambient
293
K
distance geometry, simulated annealing
1
fewest violations
3 mg/mL peptide, 20 mg/mL [U-99% 2H] DPC, 0.01 % [U-99% 2H] TSP, 90% H2O/10% D2O
90% H2O/10% D2O
Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
processing
NMRPipe
Goddard
peak picking
Sparky
Goddard
chemical shift assignment
Sparky
Schwieters, Kuszewski, Tjandra and Clore
structure solution
X-PLOR NIH
Schwieters, Kuszewski, Tjandra and Clore
refinement
X-PLOR NIH
700
Bruker
AVANCE
Bruker Avance
ARG
1
n
1
ARG
1
A
GLY
2
n
2
GLY
2
A
GLY
3
n
3
GLY
3
A
GLY
4
n
4
GLY
4
A
LEU
5
n
5
LEU
5
A
CYS
6
n
6
CYS
6
A
TYR
7
n
7
TYR
7
A
CYS
8
n
8
CYS
8
A
ARG
9
n
9
ARG
9
A
ARG
10
n
10
ARG
10
A
ARG
11
n
11
ARG
11
A
PHE
12
n
12
PHE
12
A
CYS
13
n
13
CYS
13
A
VAL
14
n
14
VAL
14
A
CYS
15
n
15
CYS
15
A
VAL
16
n
16
VAL
16
A
GLY
17
n
17
GLY
17
A
ARG
18
n
18
ARG
18
A
ARG
1
n
1
ARG
1
B
GLY
2
n
2
GLY
2
B
GLY
3
n
3
GLY
3
B
GLY
4
n
4
GLY
4
B
LEU
5
n
5
LEU
5
B
CYS
6
n
6
CYS
6
B
TYR
7
n
7
TYR
7
B
CYS
8
n
8
CYS
8
B
ARG
9
n
9
ARG
9
B
ARG
10
n
10
ARG
10
B
ARG
11
n
11
ARG
11
B
PHE
12
n
12
PHE
12
B
CYS
13
n
13
CYS
13
B
VAL
14
n
14
VAL
14
B
CYS
15
n
15
CYS
15
B
VAL
16
n
16
VAL
16
B
GLY
17
n
17
GLY
17
B
ARG
18
n
18
ARG
18
B
author_and_software_defined_assembly
PISA
2
dimeric
560
-1
4000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
TYR
7
A
N
TYR
7
A
O
VAL
14
A
O
VAL
14
A
N
CYS
15
A
N
CYS
15
B
O
CYS
15
B
O
CYS
15
B
O
VAL
14
B
O
VAL
14
B
N
TYR
7
B
N
TYR
7
1
A
ARG
10
52.84
-129.05
1
A
ARG
11
-109.29
47.11
1
B
ARG
10
52.52
-129.53
1
B
ARG
11
-109.97
41.73
NMR structure of Protegrin-3 (PG3) in the presence of DPC micelles
1
N
N
1
N
N
disulf
2.020
A
CYS
6
A
SG
CYS
6
1_555
A
CYS
15
A
SG
CYS
15
1_555
disulf
2.020
A
CYS
8
A
SG
CYS
8
1_555
A
CYS
13
A
SG
CYS
13
1_555
disulf
2.021
B
CYS
6
B
SG
CYS
6
1_555
B
CYS
15
B
SG
CYS
15
1_555
disulf
2.021
B
CYS
8
B
SG
CYS
8
1_555
B
CYS
13
B
SG
CYS
13
1_555
ANTIMICROBIAL PROTEIN
Protegrin, antimicrobial protein, DPC micelle, dimer
PG3_PIG
UNP
1
131
P32196
RGGGLCYCRRRFCVCVGR
131
148
2MZ6
1
18
P32196
A
1
1
18
131
148
2MZ6
1
18
P32196
B
1
1
18
4
anti-parallel
anti-parallel
anti-parallel
A
LEU
5
A
LEU
5
A
ARG
9
A
ARG
9
A
PHE
12
A
PHE
12
A
GLY
17
A
GLY
17
B
PHE
12
B
PHE
12
B
GLY
17
B
GLY
17
B
GLY
4
B
GLY
4
B
ARG
9
B
ARG
9