1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Kouno, T. Luengas, E.M. Shigematu, M. Shandilya, S.M.D. Zhang, J. Chen, L. Hara, M. Schiffer, C.A. Harris, R.S. Matsuo, H. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer US Nat.Struct.Mol.Biol. 1545-9993 22 485 491 10.1038/nsmb.3033 25984970 Structure of the Vif-binding domain of the antiviral enzyme APOBEC3G. 2015 10.2210/pdb2mzz/pdb pdb_00002mzz 21316.049 Apolipoprotein B mRNA-editing enzyme, catalytic polypeptide-like 3G variant 1 man polymer 65.409 ZINC ION 1 syn non-polymer no no MDPDTFSYNFNNRPILSRRNTVWLCYEVKTKGPSRPPLDAKIFRGQVYSEDKYHPEMRFLSLVSKWKLHRDQEYEVTWYI SWSPCTKCARDMATFLQENTHVTLTIFVARLYYAWDPDYQEALRSLAQAGATIKIMNYDEFQHCWSKFVYSQGAPFQPWD GLDEHSQALSGRLGEILRHS MDPDTFSYNFNNRPILSRRNTVWLCYEVKTKGPSRPPLDAKIFRGQVYSEDKYHPEMRFLSLVSKWKLHRDQEYEVTWYI SWSPCTKCARDMATFLQENTHVTLTIFVARLYYAWDPDYQEALRSLAQAGATIKIMNYDEFQHCWSKFVYSQGAPFQPWD GLDEHSQALSGRLGEILRHS A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample 32630 artificial gene 562 Escherichia coli pCold-GST database_2 pdbx_database_status pdbx_nmr_software pdbx_nmr_spectrometer pdbx_struct_conn_angle struct_conn struct_site repository Initial release Database references Database references Data collection Database references Derived calculations Other 1 0 2015-05-13 1 1 2015-06-03 1 2 2015-07-01 1 3 2023-06-14 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.status_code_nmr_data _pdbx_nmr_software.name _pdbx_nmr_spectrometer.model _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_seq_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id BMRB Y RCSB 2015-02-28 REL REL REL REL ZN ZINC ION structures with the lowest energy 100 10 2D 1H-15N TROSY 3D HNCA-TROSY 3D HN(CO)CA-TROSY 3D HNCO-TROSY 3D HN(CA)CO-TROSY 3D HNCACB-TROSY 3D HN(CO)CACB-TROSY 3D 15N-edited NOESY 2D 1H-15N TROSY 2D 1H-15N TROSY 2D 1H-15N TROSY 2D 1H-15N TROSY 2D 1H-15N TROSY 2D 1H-15N TROSY 2D 1H-13C HSQC 2D 1H-13C HSQC 2D 1H-13C HSQC 2D 1H-13C HSQC 2D 1H-13C HSQC 2D 1H-13C HSQC 2D 1H-13C HSQC 2D 1H-13C HSQC 2D 1H-13C HSQC 2D 1H-13C HSQC 2D 1H-1H NOESY 2D 1H-1H NOESY 2D 1H-1H NOESY 2D 1H-1H NOESY 2D 1H-1H NOESY 2D 1H-1H NOESY 2D 1H-1H NOESY 2D 1H-1H NOESY 2D 1H-1H NOESY 2D 1H-1H NOESY 2D 1H-1H NOESY 2D 1H-1H NOESY 2D 1H-1H NOESY 2D 1H-1H NOESY 2D 1H-1H NOESY 3D 1H-13C NOESY 0.15-0.20 mM [U-100% 15N; U-85% 2H] 10 mM 100 mM 0.005 % 0.5 mM 0.01 % 0.5 M [U-98% 2H] 0.15-0.20 mM [U-100% 13C; U-100% 15N; U-85% 2H] 10 mM 100 mM 0.005 % 0.5 mM 0.01 % 0.5 M [U-98% 2H] 0.05-0.10 mM [U-100% 13C; U-100% 15N; U-60% 2H] 10 mM 100 mM 0.005 % 0.5 mM 0.01 % 0.5 M [U-98% 2H] 0.05-0.10 mM [U-80% 2H; 100% 15N-Arg] 10 mM 100 mM 0.005 % 0.5 mM 0.01 % 0.5 M [U-98% 2H] 0.05-0.10 mM [U-80% 2H; 100% 15N-Ile] 10 mM 100 mM 0.005 % 0.5 mM 0.01 % 0.5 M [U-98% 2H] 0.05-0.10 mM [U-80% 2H; 100% 15N-Leu] 10 mM 100 mM 0.005 % 0.5 mM 0.01 % 0.5 M [U-98% 2H] 0.05-0.10 mM [U-80% 2H; 100% 15N-Lys] 10 mM 100 mM 0.005 % 0.5 mM 0.01 % 0.5 M [U-98% 2H] 0.05-0.10 mM [U-80% 2H; 100% 15N-Phe] 10 mM 100 mM 0.005 % 0.5 mM 0.01 % 0.5 M [U-98% 2H] 0.05-0.10 mM [U-80% 2H; 100% 15N-Tyr] 10 mM 100 mM 0.005 % 0.5 mM 0.01 % 0.5 M [U-98% 2H] 0.05-0.10 mM [U-80% 2H; 100% 1H, 100% 13C-Ala] 10 mM 100 mM 0.005 % 0.5 mM 0.01 % 0.5 M [U-98% 2H] 0.05-0.10 mM [U-80% 2H; 100% 1H, 100% 13C-Arg] 10 mM 100 mM 0.005 % 0.5 mM 0.01 % 0.5 M [U-98% 2H] 0.05-0.10 mM [U-80% 2H; 100% 1H, 100% 13C-Ile] 10 mM 100 mM 0.005 % 0.5 mM 0.01 % 0.5 M [U-98% 2H] 0.05-0.10 mM [U-80% 2H; 100% 1H, 100% 13C-Leu] 10 mM 100 mM 0.005 % 0.5 mM 0.01 % 0.5 M [U-98% 2H] 0.05-0.10 mM [U-80% 2H; 100% 1H, 100% 13C-Lys] 10 mM 100 mM 0.005 % 0.5 mM 0.01 % 0.5 M [U-98% 2H] 0.05-0.10 mM [U-80% 2H; 100% 1H, 100% 13C-Met] 10 mM 100 mM 0.005 % 0.5 mM 0.01 % 0.5 M [U-98% 2H] 0.05-0.10 mM [U-80% 2H; 100% 1H, 100% 13C-Phe] 10 mM 100 mM 0.005 % 0.5 mM 0.01 % 0.5 M [U-98% 2H] 0.05-0.10 mM [U-80% 2H; 100% 1H, 100% 13C-Thr] 10 mM 100 mM 0.005 % 0.5 mM 0.01 % 0.5 M [U-98% 2H] 0.05-0.10 mM [U-80% 2H; 100% 1H, 100% 13C-Tyr] 10 mM 100 mM 0.005 % 0.5 mM 0.01 % 0.5 M [U-98% 2H] 0.05-0.10 mM [U-80% 2H; 100% 1H, 100% 13C-Val] 10 mM 100 mM 0.005 % 0.5 mM 0.01 % 0.5 M [U-98% 2H] 0.05-0.10 mM [U-80% 2H; 100% 1H-Phe,Tyr,Ile] 10 mM 100 mM 0.005 % 0.5 mM 0.01 % 0.5 M [U-98% 2H] 0.05-0.10 mM [U-80% 2H; 100% 1H-Phe,Tyr,Leu] 10 mM 100 mM 0.005 % 0.5 mM 0.01 % 0.5 M [U-98% 2H] 0.05-0.10 mM [U-80% 2H; 100% 1H-Phe,Tyr,Val] 10 mM 100 mM 0.005 % 0.5 mM 0.01 % 0.5 M [U-98% 2H] 0.05-0.10 mM [U-80% 2H; 100% 1H-Trp,Ile,Leu,Val] 10 mM 100 mM 0.005 % 0.5 mM 0.01 % 0.5 M [U-98% 2H] 0.15-0.20 mM 10 mM 100 mM 0.005 % 0.5 mM 0.01 % 0.5 M [U-98% 2H] 7.3 ambient 298 K simulated annealing 1 minimized average structure 0.15-0.20 mM [U-100% 15N; U-85% 2H] sNTD, 10 mM sodium phosphate, 100 mM sodium chloride, 0.005 % Tween 20, 0.5 mM TCEP, 0.01 % sodium azide, 0.5 M [U-98% 2H] Choline o-sulfate, 95% H2O/5% D2O 95% H2O/5% D2O 0.15-0.20 mM [U-100% 13C; U-100% 15N; U-85% 2H] sNTD, 10 mM sodium phosphate, 100 mM sodium chloride, 0.005 % Tween 20, 0.5 mM TCEP, 0.01 % sodium azide, 0.5 M [U-98% 2H] Choline o-sulfate, 95% H2O/5% D2O 95% H2O/5% D2O 0.05-0.10 mM [U-100% 13C; U-100% 15N; U-60% 2H] sNTD, 10 mM sodium phosphate, 100 mM sodium chloride, 0.005 % Tween 20, 0.5 mM TCEP, 0.01 % sodium azide, 0.5 M [U-98% 2H] Choline o-sulfate, 95% H2O/5% D2O 95% H2O/5% D2O 0.05-0.10 mM [U-80% 2H; 100% 15N-Arg] sNTD, 10 mM sodium phosphate, 100 mM sodium chloride, 0.005 % Tween 20, 0.5 mM TCEP, 0.01 % sodium azide, 0.5 M [U-98% 2H] Choline o-sulfate, 95% H2O/5% D2O 95% H2O/5% D2O 0.05-0.10 mM [U-80% 2H; 100% 15N-Ile] sNTD, 10 mM sodium phosphate, 100 mM sodium chloride, 0.005 % Tween 20, 0.5 mM TCEP, 0.01 % sodium azide, 0.5 M [U-98% 2H] Choline o-sulfate, 95% H2O/5% D2O 95% H2O/5% D2O 0.05-0.10 mM [U-80% 2H; 100% 15N-Leu] sNTD, 10 mM sodium phosphate, 100 mM sodium chloride, 0.005 % Tween 20, 0.5 mM TCEP, 0.01 % sodium azide, 0.5 M [U-98% 2H] Choline o-sulfate, 95% H2O/5% D2O 95% H2O/5% D2O 0.05-0.10 mM [U-80% 2H; 100% 15N-Lys] sNTD, 10 mM sodium phosphate, 100 mM sodium chloride, 0.005 % Tween 20, 0.5 mM TCEP, 0.01 % sodium azide, 0.5 M [U-98% 2H] Choline o-sulfate, 95% H2O/5% D2O 95% H2O/5% D2O 0.05-0.10 mM [U-80% 2H; 100% 15N-Phe] sNTD, 10 mM sodium phosphate, 100 mM sodium chloride, 0.005 % Tween 20, 0.5 mM TCEP, 0.01 % sodium azide, 0.5 M [U-98% 2H] Choline o-sulfate, 95% H2O/5% D2O 95% H2O/5% D2O 0.05-0.10 mM [U-80% 2H; 100% 15N-Tyr] sNTD, 10 mM sodium phosphate, 100 mM sodium chloride, 0.005 % Tween 20, 0.5 mM TCEP, 0.01 % sodium azide, 0.5 M [U-98% 2H] Choline o-sulfate, 95% H2O/5% D2O 95% H2O/5% D2O 0.05-0.10 mM [U-80% 2H; 100% 1H, 100% 13C-Ala] sNTD, 10 mM sodium phosphate, 100 mM sodium chloride, 0.005 % Tween 20, 0.5 mM TCEP, 0.01 % sodium azide, 0.5 M [U-98% 2H] Choline o-sulfate, 100% D2O 100% D2O 0.05-0.10 mM [U-80% 2H; 100% 1H, 100% 13C-Arg] sNTD, 10 mM sodium phosphate, 100 mM sodium chloride, 0.005 % Tween 20, 0.5 mM TCEP, 0.01 % sodium azide, 0.5 M [U-98% 2H] Choline o-sulfate, 100% D2O 100% D2O 0.05-0.10 mM [U-80% 2H; 100% 1H, 100% 13C-Ile] sNTD, 10 mM sodium phosphate, 100 mM sodium chloride, 0.005 % Tween 20, 0.5 mM TCEP, 0.01 % sodium azide, 0.5 M [U-98% 2H] Choline o-sulfate, 100% D2O 100% D2O 0.05-0.10 mM [U-80% 2H; 100% 1H, 100% 13C-Leu] sNTD, 10 mM sodium phosphate, 100 mM sodium chloride, 0.005 % Tween 20, 0.5 mM TCEP, 0.01 % sodium azide, 0.5 M [U-98% 2H] Choline o-sulfate, 100% D2O 100% D2O 0.05-0.10 mM [U-80% 2H; 100% 1H, 100% 13C-Lys] sNTD, 10 mM sodium phosphate, 100 mM sodium chloride, 0.005 % Tween 20, 0.5 mM TCEP, 0.01 % sodium azide, 0.5 M [U-98% 2H] Choline o-sulfate, 100% D2O 100% D2O 0.05-0.10 mM [U-80% 2H; 100% 1H, 100% 13C-Met] sNTD, 10 mM sodium phosphate, 100 mM sodium chloride, 0.005 % Tween 20, 0.5 mM TCEP, 0.01 % sodium azide, 0.5 M [U-98% 2H] Choline o-sulfate, 100% D2O 100% D2O 0.05-0.10 mM [U-80% 2H; 100% 1H, 100% 13C-Phe] sNTD, 10 mM sodium phosphate, 100 mM sodium chloride, 0.005 % Tween 20, 0.5 mM TCEP, 0.01 % sodium azide, 0.5 M [U-98% 2H] Choline o-sulfate, 100% D2O 100% D2O 0.05-0.10 mM [U-80% 2H; 100% 1H, 100% 13C-Thr] sNTD, 10 mM sodium phosphate, 100 mM sodium chloride, 0.005 % Tween 20, 0.5 mM TCEP, 0.01 % sodium azide, 0.5 M [U-98% 2H] Choline o-sulfate, 100% D2O 100% D2O 0.05-0.10 mM [U-80% 2H; 100% 1H, 100% 13C-Tyr] sNTD, 10 mM sodium phosphate, 100 mM sodium chloride, 0.005 % Tween 20, 0.5 mM TCEP, 0.01 % sodium azide, 0.5 M [U-98% 2H] Choline o-sulfate, 100% D2O 100% D2O 0.05-0.10 mM [U-80% 2H; 100% 1H, 100% 13C-Val] sNTD, 10 mM sodium phosphate, 100 mM sodium chloride, 0.005 % Tween 20, 0.5 mM TCEP, 0.01 % sodium azide, 0.5 M [U-98% 2H] Choline o-sulfate, 100% D2O 100% D2O 0.05-0.10 mM [U-80% 2H; 100% 1H-Phe,Tyr,Ile] sNTD, 10 mM sodium phosphate, 100 mM sodium chloride, 0.005 % Tween 20, 0.5 mM TCEP, 0.01 % sodium azide, 0.5 M [U-98% 2H] Choline o-sulfate, 100% D2O 100% D2O 0.05-0.10 mM [U-80% 2H; 100% 1H-Phe,Tyr,Leu] sNTD, 10 mM sodium phosphate, 100 mM sodium chloride, 0.005 % Tween 20, 0.5 mM TCEP, 0.01 % sodium azide, 0.5 M [U-98% 2H] Choline o-sulfate, 100% D2O 100% D2O 0.05-0.10 mM [U-80% 2H; 100% 1H-Phe,Tyr,Val] sNTD, 10 mM sodium phosphate, 100 mM sodium chloride, 0.005 % Tween 20, 0.5 mM TCEP, 0.01 % sodium azide, 0.5 M [U-98% 2H] Choline o-sulfate, 100% D2O 100% D2O 0.05-0.10 mM [U-80% 2H; 100% 1H-Trp,Ile,Leu,Val] sNTD, 10 mM sodium phosphate, 100 mM sodium chloride, 0.005 % Tween 20, 0.5 mM TCEP, 0.01 % sodium azide, 0.5 M [U-98% 2H] Choline o-sulfate, 100% D2O 100% D2O 0.15-0.20 mM sNTD, 10 mM sodium phosphate, 100 mM sodium chloride, 0.005 % Tween 20, 0.5 mM TCEP, 0.01 % sodium azide, 0.5 M [U-98% 2H] Choline o-sulfate, 100% D2O 100% D2O Bruker Biospin collection TopSpin Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax processing NMRPipe Goddard data analysis Sparky Cornilescu, Delaglio and Bax estimation of dihedral angles TALOS Schwieters, Kuszewski, Tjandra and Clore structure solution X-PLOR NIH Koradi, Billeter and Wuthrich drawing structures MOLMOL Schrodinger drawing structures MacPyMol Laskowski and MacArthur evaluation of structure quality ProcheckNMR Schwieters, Kuszewski, Tjandra and Clore refinement X-PLOR NIH 700 Bruker AVANCE Bruker Avance 850 Bruker AVANCE Bruker Avance 900 Bruker AVANCE Bruker Avance ZN 250 2 ZN ZN 201 A MET 1 n 1 MET 1 A ASP 2 n 2 ASP 2 A PRO 3 n 3 PRO 3 A ASP 4 n 4 ASP 4 A THR 5 n 5 THR 5 A PHE 6 n 6 PHE 6 A SER 7 n 7 SER 7 A TYR 8 n 8 TYR 8 A ASN 9 n 9 ASN 9 A PHE 10 n 10 PHE 10 A ASN 11 n 11 ASN 11 A ASN 12 n 12 ASN 12 A ARG 13 n 13 ARG 13 A PRO 14 n 14 PRO 14 A ILE 15 n 15 ILE 15 A LEU 16 n 16 LEU 16 A SER 17 n 17 SER 17 A ARG 18 n 18 ARG 18 A ARG 19 n 19 ARG 19 A ASN 20 n 20 ASN 20 A THR 21 n 21 THR 21 A VAL 22 n 22 VAL 22 A TRP 23 n 23 TRP 23 A LEU 24 n 24 LEU 24 A CYS 25 n 25 CYS 25 A TYR 26 n 26 TYR 26 A GLU 27 n 27 GLU 27 A VAL 28 n 28 VAL 28 A LYS 29 n 29 LYS 29 A THR 30 n 30 THR 30 A LYS 31 n 31 LYS 31 A GLY 32 n 32 GLY 32 A PRO 33 n 33 PRO 33 A SER 34 n 34 SER 34 A ARG 35 n 35 ARG 35 A PRO 36 n 36 PRO 36 A PRO 37 n 37 PRO 37 A LEU 38 n 38 LEU 38 A ASP 39 n 39 ASP 39 A ALA 40 n 40 ALA 40 A LYS 41 n 41 LYS 41 A ILE 42 n 42 ILE 42 A PHE 43 n 43 PHE 43 A ARG 44 n 44 ARG 44 A GLY 45 n 45 GLY 45 A GLN 46 n 46 GLN 46 A VAL 47 n 47 VAL 47 A TYR 48 n 48 TYR 48 A SER 49 n 49 SER 49 A GLU 50 n 50 GLU 50 A ASP 51 n 51 ASP 51 A LYS 52 n 52 LYS 52 A TYR 53 n 53 TYR 53 A HIS 54 n 54 HIS 54 A PRO 55 n 55 PRO 55 A GLU 56 n 56 GLU 56 A MET 57 n 57 MET 57 A ARG 58 n 58 ARG 58 A PHE 59 n 59 PHE 59 A LEU 60 n 60 LEU 60 A SER 61 n 61 SER 61 A LEU 62 n 62 LEU 62 A VAL 63 n 63 VAL 63 A SER 64 n 64 SER 64 A LYS 65 n 65 LYS 65 A TRP 66 n 66 TRP 66 A LYS 67 n 67 LYS 67 A LEU 68 n 68 LEU 68 A HIS 69 n 69 HIS 69 A ARG 70 n 70 ARG 70 A ASP 71 n 71 ASP 71 A GLN 72 n 72 GLN 72 A GLU 73 n 73 GLU 73 A TYR 74 n 74 TYR 74 A GLU 75 n 75 GLU 75 A VAL 76 n 76 VAL 76 A THR 77 n 77 THR 77 A TRP 78 n 78 TRP 78 A TYR 79 n 79 TYR 79 A ILE 80 n 80 ILE 80 A SER 81 n 81 SER 81 A TRP 82 n 82 TRP 82 A SER 83 n 83 SER 83 A PRO 84 n 84 PRO 84 A CYS 85 n 85 CYS 85 A THR 86 n 86 THR 86 A LYS 87 n 87 LYS 87 A CYS 88 n 88 CYS 88 A ALA 89 n 89 ALA 89 A ARG 90 n 90 ARG 90 A ASP 91 n 91 ASP 91 A MET 92 n 92 MET 92 A ALA 93 n 93 ALA 93 A THR 94 n 94 THR 94 A PHE 95 n 95 PHE 95 A LEU 96 n 96 LEU 96 A GLN 97 n 97 GLN 97 A GLU 98 n 98 GLU 98 A ASN 99 n 99 ASN 99 A THR 100 n 100 THR 100 A HIS 101 n 101 HIS 101 A VAL 102 n 102 VAL 102 A THR 103 n 103 THR 103 A LEU 104 n 104 LEU 104 A THR 105 n 105 THR 105 A ILE 106 n 106 ILE 106 A PHE 107 n 107 PHE 107 A VAL 108 n 108 VAL 108 A ALA 109 n 109 ALA 109 A ARG 110 n 110 ARG 110 A LEU 111 n 111 LEU 111 A TYR 112 n 112 TYR 112 A TYR 113 n 113 TYR 113 A ALA 114 n 114 ALA 114 A TRP 115 n 115 TRP 115 A ASP 116 n 116 ASP 116 A PRO 117 n 117 PRO 117 A ASP 118 n 118 ASP 118 A TYR 119 n 119 TYR 119 A GLN 120 n 120 GLN 120 A GLU 121 n 121 GLU 121 A ALA 122 n 122 ALA 122 A LEU 123 n 123 LEU 123 A ARG 124 n 124 ARG 124 A SER 125 n 125 SER 125 A LEU 126 n 126 LEU 126 A ALA 127 n 127 ALA 127 A GLN 128 n 128 GLN 128 A ALA 129 n 129 ALA 129 A GLY 130 n 130 GLY 130 A ALA 131 n 131 ALA 131 A THR 132 n 132 THR 132 A ILE 133 n 133 ILE 133 A LYS 134 n 134 LYS 134 A ILE 135 n 135 ILE 135 A MET 136 n 136 MET 136 A ASN 137 n 137 ASN 137 A TYR 138 n 138 TYR 138 A ASP 139 n 139 ASP 139 A GLU 140 n 140 GLU 140 A PHE 141 n 141 PHE 141 A GLN 142 n 142 GLN 142 A HIS 143 n 143 HIS 143 A CYS 144 n 144 CYS 144 A TRP 145 n 145 TRP 145 A SER 146 n 146 SER 146 A LYS 147 n 147 LYS 147 A PHE 148 n 148 PHE 148 A VAL 149 n 149 VAL 149 A TYR 150 n 150 TYR 150 A SER 151 n 151 SER 151 A GLN 152 n 152 GLN 152 A GLY 153 n 153 GLY 153 A ALA 154 n 154 ALA 154 A PRO 155 n 155 PRO 155 A PHE 156 n 156 PHE 156 A GLN 157 n 157 GLN 157 A PRO 158 n 158 PRO 158 A TRP 159 n 159 TRP 159 A ASP 160 n 160 ASP 160 A GLY 161 n 161 GLY 161 A LEU 162 n 162 LEU 162 A ASP 163 n 163 ASP 163 A GLU 164 n 164 GLU 164 A HIS 165 n 165 HIS 165 A SER 166 n 166 SER 166 A GLN 167 n 167 GLN 167 A ALA 168 n 168 ALA 168 A LEU 169 n 169 LEU 169 A SER 170 n 170 SER 170 A GLY 171 n 171 GLY 171 A ARG 172 n 172 ARG 172 A LEU 173 n 173 LEU 173 A GLY 174 n 174 GLY 174 A GLU 175 n 175 GLU 175 A ILE 176 n 176 ILE 176 A LEU 177 n 177 LEU 177 A ARG 178 n 178 ARG 178 A HIS 179 n 179 HIS 179 A SER 180 n 180 SER 180 A author_defined_assembly 1 monomeric A HIS 54 A ND1 HIS 54 1_555 A ZN 201 B ZN ZN 1_555 A CYS 85 A SG CYS 85 1_555 110.5 A HIS 54 A ND1 HIS 54 1_555 A ZN 201 B ZN ZN 1_555 A CYS 88 A SG CYS 88 1_555 108.8 A CYS 85 A SG CYS 85 1_555 A ZN 201 B ZN ZN 1_555 A CYS 88 A SG CYS 88 1_555 109.5 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O PHE 43 A O PHE 43 A N VAL 28 A N VAL 28 A N CYS 25 A N CYS 25 A O TYR 79 A O TYR 79 A N TRP 78 A N TRP 78 A O THR 105 A O THR 105 A N LEU 104 A N LEU 104 A O THR 132 A O THR 132 1 A ARG 13 0.318 SIDE CHAIN 1 A ARG 18 0.315 SIDE CHAIN 1 A ARG 19 0.315 SIDE CHAIN 1 A ARG 35 0.308 SIDE CHAIN 1 A ARG 44 0.248 SIDE CHAIN 1 A ARG 58 0.296 SIDE CHAIN 1 A ARG 70 0.318 SIDE CHAIN 1 A ARG 90 0.297 SIDE CHAIN 1 A ARG 110 0.246 SIDE CHAIN 1 A ARG 124 0.308 SIDE CHAIN 1 A ARG 172 0.313 SIDE CHAIN 1 A ARG 178 0.315 SIDE CHAIN 2 A ARG 13 0.306 SIDE CHAIN 2 A ARG 18 0.317 SIDE CHAIN 2 A ARG 19 0.317 SIDE CHAIN 2 A ARG 35 0.308 SIDE CHAIN 2 A ARG 44 0.318 SIDE CHAIN 2 A ARG 58 0.300 SIDE CHAIN 2 A ARG 70 0.315 SIDE CHAIN 2 A ARG 90 0.302 SIDE CHAIN 2 A ARG 110 0.318 SIDE CHAIN 2 A ARG 124 0.309 SIDE CHAIN 2 A ARG 172 0.317 SIDE CHAIN 2 A ARG 178 0.317 SIDE CHAIN 3 A ARG 13 0.317 SIDE CHAIN 3 A ARG 18 0.293 SIDE CHAIN 3 A ARG 19 0.317 SIDE CHAIN 3 A ARG 35 0.317 SIDE CHAIN 3 A ARG 44 0.301 SIDE CHAIN 3 A ARG 58 0.309 SIDE CHAIN 3 A ARG 70 0.317 SIDE CHAIN 3 A ARG 90 0.301 SIDE CHAIN 3 A ARG 110 0.313 SIDE CHAIN 3 A ARG 124 0.277 SIDE CHAIN 3 A ARG 172 0.312 SIDE CHAIN 3 A ARG 178 0.310 SIDE CHAIN 4 A ARG 13 0.280 SIDE CHAIN 4 A ARG 18 0.306 SIDE CHAIN 4 A ARG 19 0.318 SIDE CHAIN 4 A ARG 35 0.316 SIDE CHAIN 4 A ARG 44 0.305 SIDE CHAIN 4 A ARG 58 0.316 SIDE CHAIN 4 A ARG 70 0.308 SIDE CHAIN 4 A ARG 90 0.315 SIDE CHAIN 4 A ARG 110 0.315 SIDE CHAIN 4 A ARG 124 0.313 SIDE CHAIN 4 A ARG 172 0.316 SIDE CHAIN 4 A ARG 178 0.316 SIDE CHAIN 5 A ARG 13 0.317 SIDE CHAIN 5 A ARG 18 0.305 SIDE CHAIN 5 A ARG 19 0.317 SIDE CHAIN 5 A ARG 35 0.315 SIDE CHAIN 5 A ARG 44 0.317 SIDE CHAIN 5 A ARG 58 0.210 SIDE CHAIN 5 A ARG 70 0.220 SIDE CHAIN 5 A ARG 90 0.309 SIDE CHAIN 5 A ARG 110 0.316 SIDE CHAIN 5 A ARG 124 0.316 SIDE CHAIN 5 A ARG 172 0.308 SIDE CHAIN 5 A ARG 178 0.315 SIDE CHAIN 6 A ARG 13 0.313 SIDE CHAIN 6 A ARG 18 0.318 SIDE CHAIN 6 A ARG 19 0.317 SIDE CHAIN 6 A ARG 35 0.318 SIDE CHAIN 6 A ARG 44 0.311 SIDE CHAIN 6 A ARG 58 0.316 SIDE CHAIN 6 A ARG 70 0.307 SIDE CHAIN 6 A ARG 90 0.278 SIDE CHAIN 6 A ARG 110 0.309 SIDE CHAIN 6 A ARG 124 0.317 SIDE CHAIN 6 A ARG 172 0.317 SIDE CHAIN 6 A ARG 178 0.315 SIDE CHAIN 7 A ARG 13 0.290 SIDE CHAIN 7 A ARG 18 0.313 SIDE CHAIN 7 A ARG 19 0.308 SIDE CHAIN 7 A ARG 35 0.313 SIDE CHAIN 7 A ARG 44 0.286 SIDE CHAIN 7 A ARG 58 0.301 SIDE CHAIN 7 A ARG 70 0.292 SIDE CHAIN 7 A ARG 90 0.310 SIDE CHAIN 7 A ARG 110 0.315 SIDE CHAIN 7 A ARG 124 0.273 SIDE CHAIN 7 A ARG 172 0.312 SIDE CHAIN 7 A ARG 178 0.316 SIDE CHAIN 8 A ARG 13 0.301 SIDE CHAIN 8 A ARG 18 0.316 SIDE CHAIN 8 A ARG 19 0.300 SIDE CHAIN 8 A ARG 35 0.317 SIDE CHAIN 8 A ARG 44 0.313 SIDE CHAIN 8 A ARG 58 0.314 SIDE CHAIN 8 A ARG 70 0.289 SIDE CHAIN 8 A ARG 90 0.313 SIDE CHAIN 8 A ARG 110 0.308 SIDE CHAIN 8 A ARG 124 0.314 SIDE CHAIN 8 A ARG 172 0.318 SIDE CHAIN 8 A ARG 178 0.316 SIDE CHAIN 9 A ARG 13 0.316 SIDE CHAIN 9 A ARG 18 0.317 SIDE CHAIN 9 A ARG 19 0.314 SIDE CHAIN 9 A ARG 35 0.309 SIDE CHAIN 9 A ARG 44 0.309 SIDE CHAIN 9 A ARG 58 0.313 SIDE CHAIN 9 A ARG 70 0.317 SIDE CHAIN 9 A ARG 90 0.257 SIDE CHAIN 9 A ARG 110 0.309 SIDE CHAIN 9 A ARG 124 0.304 SIDE CHAIN 9 A ARG 172 0.305 SIDE CHAIN 9 A ARG 178 0.314 SIDE CHAIN 10 A ARG 13 0.273 SIDE CHAIN 10 A ARG 18 0.316 SIDE CHAIN 10 A ARG 19 0.313 SIDE CHAIN 10 A ARG 35 0.313 SIDE CHAIN 10 A ARG 44 0.316 SIDE CHAIN 10 A ARG 58 0.310 SIDE CHAIN 10 A ARG 70 0.303 SIDE CHAIN 10 A ARG 90 0.308 SIDE CHAIN 10 A ARG 110 0.308 SIDE CHAIN 10 A ARG 124 0.315 SIDE CHAIN 10 A ARG 172 0.313 SIDE CHAIN 10 A ARG 178 0.313 SIDE CHAIN 1 A ASP 2 59.80 170.40 1 A ASP 4 -101.66 -66.71 1 A LEU 16 -155.73 49.76 1 A SER 17 53.95 -151.44 1 A ARG 19 -155.92 77.94 1 A ASN 20 -150.01 41.37 1 A TRP 23 -88.79 -88.72 1 A LYS 29 -129.06 -168.32 1 A LYS 31 -40.64 -83.87 1 A ALA 40 59.57 -167.28 1 A LYS 41 -117.20 70.49 1 A TYR 48 56.51 -168.83 1 A SER 49 -99.05 38.55 1 A HIS 54 -72.54 -168.47 1 A PRO 55 -75.48 31.55 1 A HIS 69 -162.22 43.53 1 A GLN 72 -168.73 -64.91 1 A SER 81 -140.31 -68.48 1 A SER 83 -171.30 -172.75 1 A PRO 84 -80.85 30.39 1 A THR 100 67.20 -50.10 1 A ARG 110 63.15 -76.19 1 A ALA 114 -136.47 -69.00 1 A TRP 115 -173.78 87.93 1 A TYR 150 -102.85 -75.34 1 A GLN 152 55.96 18.82 1 A TRP 159 -108.00 -108.44 1 A ASP 160 -81.52 44.57 1 A ARG 178 -94.34 -63.86 2 A ASP 4 -105.91 -64.91 2 A SER 17 54.36 81.75 2 A ARG 18 -79.94 -82.48 2 A TRP 23 -176.55 130.93 2 A PRO 37 -71.56 -76.02 2 A ASP 39 -122.49 -89.26 2 A ALA 40 177.21 -90.79 2 A GLU 50 -100.98 48.90 2 A TRP 66 -86.80 -77.54 2 A GLN 72 -162.98 -82.48 2 A SER 81 -113.37 -82.78 2 A PRO 84 -78.76 30.68 2 A THR 100 53.14 171.59 2 A HIS 101 67.21 -8.38 2 A LEU 111 -104.36 66.76 2 A TRP 115 -148.36 50.26 2 A LYS 147 -91.72 -61.19 2 A TYR 150 69.04 -68.40 2 A TRP 159 -102.61 -108.16 2 A ASP 160 -82.18 38.79 3 A ASP 4 -104.19 -67.54 3 A SER 17 57.90 177.37 3 A ARG 18 -162.94 48.60 3 A ASP 39 -160.92 -51.59 3 A ALA 40 -103.51 -152.93 3 A GLU 56 -83.66 48.74 3 A LYS 67 -149.65 50.22 3 A GLN 72 -133.03 -74.51 3 A CYS 85 48.44 176.62 3 A THR 100 66.70 -53.83 3 A ASP 116 59.40 98.79 3 A ASP 118 -154.20 -43.43 3 A GLN 152 52.52 80.97 3 A TRP 159 -100.05 -108.28 4 A ASP 4 -109.34 -68.67 4 A ARG 19 64.49 166.94 4 A LYS 31 -61.02 -85.08 4 A SER 34 -87.66 -140.54 4 A PRO 37 -75.58 -158.88 4 A LEU 38 -74.05 -154.18 4 A LYS 41 -147.44 47.00 4 A TYR 48 -172.10 -45.29 4 A LYS 52 -91.29 34.91 4 A HIS 69 -102.71 77.89 4 A SER 81 -104.24 -65.03 4 A SER 83 -177.59 -179.57 4 A THR 86 -70.26 -75.17 4 A THR 100 61.10 158.59 4 A TYR 112 -142.93 -38.36 4 A GLN 152 52.04 86.95 4 A TRP 159 -109.56 -107.66 4 A ASP 160 -81.16 40.42 5 A ASP 4 -109.09 -66.53 5 A PRO 14 -69.90 -172.02 5 A ILE 15 52.43 88.90 5 A SER 17 -140.62 48.58 5 A ARG 19 -115.56 -75.98 5 A VAL 22 -119.35 51.23 5 A PRO 37 -71.61 -167.06 5 A LYS 41 -148.54 47.66 5 A GLN 46 -142.29 -87.36 5 A SER 49 68.59 129.71 5 A GLU 50 -118.75 73.81 5 A PRO 55 -68.60 0.25 5 A GLU 56 -83.49 -72.11 5 A SER 83 61.50 106.36 5 A CYS 85 49.74 126.61 5 A THR 100 65.82 -50.92 5 A HIS 101 -69.84 0.66 5 A LEU 111 67.68 100.26 5 A TYR 112 53.78 77.24 5 A ASP 116 54.34 100.28 5 A ASP 118 -152.55 -36.73 5 A TYR 150 -101.00 -69.96 5 A TRP 159 -112.84 -109.29 5 A ARG 178 -98.48 -61.15 5 A HIS 179 -76.08 -80.41 6 A PHE 10 -92.24 34.46 6 A SER 17 67.47 158.96 6 A THR 21 61.59 155.26 6 A LYS 29 -123.15 -163.96 6 A LEU 38 -74.21 -160.75 6 A ALA 40 -169.44 -51.07 6 A GLU 50 -115.58 70.91 6 A HIS 54 -73.03 -163.92 6 A PRO 55 -76.09 35.40 6 A GLU 56 -84.03 -92.41 6 A HIS 69 -150.48 47.76 6 A GLN 72 -68.97 -168.42 6 A SER 81 -100.86 -65.13 6 A TRP 82 -143.73 43.90 6 A SER 83 -147.99 49.94 6 A CYS 85 52.14 132.24 6 A THR 100 61.25 158.07 6 A HIS 101 66.18 -0.87 6 A TYR 112 -115.51 65.23 6 A ALA 114 -68.25 -79.98 6 A TRP 115 -150.21 87.39 6 A MET 136 -53.17 109.44 6 A TRP 159 -108.21 -106.79 7 A ASP 4 -109.30 -69.22 7 A ASN 20 -146.41 52.32 7 A LEU 38 -71.88 -164.18 7 A LYS 41 -106.01 53.59 7 A GLN 46 -151.30 -153.49 7 A VAL 47 -103.61 62.47 7 A SER 49 63.35 172.51 7 A PRO 55 -74.33 24.95 7 A GLU 56 -84.66 -86.23 7 A LEU 68 -123.53 -73.14 7 A HIS 69 50.28 79.28 7 A ARG 70 -77.38 -83.70 7 A ASP 71 -111.03 -70.12 7 A GLN 72 -162.40 -39.22 7 A SER 81 -106.37 -67.76 7 A TRP 82 -155.23 -106.73 7 A SER 83 57.54 -168.45 7 A THR 100 56.35 -58.52 7 A ARG 110 61.86 -84.57 7 A LEU 111 64.58 -74.83 7 A TYR 113 -78.00 -74.58 7 A ALA 114 59.17 102.08 7 A TRP 115 58.94 -172.63 7 A VAL 149 -90.25 -134.89 7 A TYR 150 -132.93 -40.25 7 A GLN 152 53.70 77.25 7 A TRP 159 -105.49 -115.40 8 A ASP 4 -102.04 -61.12 8 A THR 5 -50.13 106.53 8 A ARG 18 66.88 152.21 8 A ARG 19 -153.25 67.99 8 A ASN 20 55.65 -96.33 8 A TYR 48 -97.20 46.36 8 A SER 49 -163.58 -48.24 8 A GLU 56 -82.89 36.85 8 A MET 57 -108.94 -64.21 8 A LYS 67 58.10 -166.81 8 A HIS 69 56.49 -177.99 8 A GLN 72 58.70 -91.40 8 A SER 81 -128.55 -74.37 8 A SER 83 -179.34 -171.59 8 A PRO 84 -79.67 32.28 8 A THR 100 65.43 -52.47 8 A HIS 101 -69.83 0.55 8 A TYR 113 58.31 -174.38 8 A ASP 118 -160.53 -50.82 8 A TYR 150 -103.03 -80.06 8 A SER 151 46.22 27.90 8 A GLN 152 55.74 17.43 8 A TRP 159 -127.03 -111.78 8 A ARG 178 -93.38 -64.46 9 A ASP 2 -151.28 89.92 9 A ASP 4 -104.26 -65.07 9 A ASN 9 -145.38 -6.46 9 A LEU 38 -100.03 -155.10 9 A ALA 40 63.66 172.80 9 A SER 49 -144.12 -59.42 9 A GLU 56 -78.08 24.11 9 A LYS 67 51.86 75.42 9 A LEU 68 -131.73 -58.23 9 A GLN 72 -73.26 -169.85 9 A SER 83 66.43 136.40 9 A CYS 85 46.50 177.55 9 A THR 100 67.36 -48.80 9 A ARG 110 57.58 -84.97 9 A GLN 152 54.82 89.09 9 A TRP 159 -102.26 -108.21 9 A ASP 160 -81.62 40.88 10 A ASP 4 -100.55 -65.71 10 A ILE 15 43.83 79.41 10 A LYS 29 -126.29 -160.73 10 A LYS 31 51.72 -93.19 10 A ASP 39 -169.14 -48.24 10 A ALA 40 -141.19 -148.09 10 A TYR 48 -157.98 33.29 10 A GLU 50 -118.46 72.15 10 A TRP 66 -87.01 -72.99 10 A LYS 67 -159.42 38.31 10 A LEU 68 54.04 -160.40 10 A HIS 69 -119.43 74.80 10 A GLN 72 72.88 -55.15 10 A SER 83 51.03 98.00 10 A CYS 85 50.96 125.40 10 A THR 100 34.85 79.41 10 A HIS 101 171.56 -25.33 10 A ALA 109 -102.14 -60.33 10 A TYR 112 -154.44 41.63 10 A TRP 115 58.58 -93.67 10 A TYR 150 -96.71 -91.61 10 A TRP 159 -118.42 -110.91 10 A ARG 178 -91.79 -63.86 minimized average structure, model1 minimized average NMR structure of APOBEC3G NTD variant, sNTD 1 N N 2 N N A PHE 59 A PHE 59 HELX_P A TRP 66 A TRP 66 1 1 8 A PRO 84 A PRO 84 HELX_P A THR 100 A THR 100 1 2 17 A ASP 116 A ASP 116 HELX_P A ALA 129 A ALA 129 1 3 14 A ASN 137 A ASN 137 HELX_P A VAL 149 A VAL 149 1 4 13 A TYR 150 A TYR 150 HELX_P A ALA 154 A ALA 154 5 5 5 A GLY 161 A GLY 161 HELX_P A HIS 179 A HIS 179 1 6 19 metalc 1.998 A HIS 54 A ND1 HIS 54 1_555 A ZN 201 B ZN ZN 1_555 metalc 2.321 A CYS 85 A SG CYS 85 1_555 A ZN 201 B ZN ZN 1_555 metalc 2.291 A CYS 88 A SG CYS 88 1_555 A ZN 201 B ZN ZN 1_555 Hydrolase, Antiviral protein Vif-binding domain, Hydrolase, Antiviral protein 2MZZ PDB 1 2MZZ 1 180 2MZZ 1 180 2MZZ A 1 1 180 5 anti-parallel anti-parallel parallel parallel A PHE 43 A PHE 43 A GLY 45 A GLY 45 A LEU 24 A LEU 24 A THR 30 A THR 30 A TYR 74 A TYR 74 A ILE 80 A ILE 80 A VAL 102 A VAL 102 A VAL 108 A VAL 108 A ALA 131 A ALA 131 A ILE 135 A ILE 135 BINDING SITE FOR RESIDUE ZN A 201 A ZN 201 Software 6 A LEU 24 A LEU 24 6 1_555 A HIS 54 A HIS 54 6 1_555 A PRO 55 A PRO 55 6 1_555 A CYS 85 A CYS 85 6 1_555 A CYS 88 A CYS 88 6 1_555 A MET 92 A MET 92 6 1_555