1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Marassi, F.M. Ding, Y. Yao, Y. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking NE J.Biomol.Nmr JBNME9 0800 0925-2738 63 59 65 10.1007/s10858-015-9963-2 26143069 Backbone structure of Yersinia pestis Ail determined in micelles by NMR-restrained simulated annealing with implicit membrane solvation. 2015 10.2210/pdb2n2m/pdb pdb_00002n2m 17492.400 Outer membrane protein X 1 man polymer no no EGESSISIGYAQSRVKEDGYKLDKNPRGFNLKYRYEFNNDWGVIGSFAQTRRGFEESVDGFKLIDGDFKYYSVTAGPVFR INEYVSLYGLLGAGHGKAKFSSIFGQSESRSKTSLAYGAGLQFNPHPNFVIDASYEYSKLDDVKVGTWMLGAGYRF EGESSISIGYAQSRVKEDGYKLDKNPRGFNLKYRYEFNNDWGVIGSFAQTRRGFEESVDGFKLIDGDFKYYSVTAGPVFR INEYVSLYGLLGAGHGKAKFSSIFGQSESRSKTSLAYGAGLQFNPHPNFVIDASYEYSKLDDVKVGTWMLGAGYRF A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample ompX, y1324 632 Yersinia pestis 562 Escherichia coli Plasmid pET database_2 pdbx_database_status pdbx_nmr_software pdbx_nmr_spectrometer repository Initial release Database references Data collection Database references Other 1 0 2015-07-22 1 1 2015-10-07 1 2 2023-06-14 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.status_code_nmr_data _pdbx_nmr_software.name _pdbx_nmr_spectrometer.model BMRB Y RCSB 2015-05-10 REL REL REL REL structures with the least restraint violations 100 10 1 2D 1H-15N HSQC 3D HNCA 3D HNCACB 3D 1H-15N NOESY 0.4-0.5 mM [U-100% 13C; U-100% 15N] 20 mM 5 mM 170 mM 25 6.8 ambient 318 K Structures were folded and refined using the standard nonbonded potential REPEL simulated annealing 1 lowest energy 0.4-0.5 mM [U-100% 13C; U-100% 15N] Yersinia pestis Ail, 20 mM sodium phosphate, 5 mM sodium chloride, 170 mM decyl-phosphocholine (DePC), 90% H2O/10% D2O 90% H2O/10% D2O Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax data analysis NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax chemical shift assignment NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax processing NMRPipe Cornilescu, Delaglio and Bax chemical shift calculation TALOS Schwieters, Kuszewski, Tjandra and Clore structure solution X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore refinement X-PLOR NIH 600 Bruker AVANCE Bruker Avance GLU 1 n 1 GLU 1 A GLY 2 n 2 GLY 2 A GLU 3 n 3 GLU 3 A SER 4 n 4 SER 4 A SER 5 n 5 SER 5 A ILE 6 n 6 ILE 6 A SER 7 n 7 SER 7 A ILE 8 n 8 ILE 8 A GLY 9 n 9 GLY 9 A TYR 10 n 10 TYR 10 A ALA 11 n 11 ALA 11 A GLN 12 n 12 GLN 12 A SER 13 n 13 SER 13 A ARG 14 n 14 ARG 14 A VAL 15 n 15 VAL 15 A LYS 16 n 16 LYS 16 A GLU 17 n 17 GLU 17 A ASP 18 n 18 ASP 18 A GLY 19 n 19 GLY 19 A TYR 20 n 20 TYR 20 A LYS 21 n 21 LYS 21 A LEU 22 n 22 LEU 22 A ASP 23 n 23 ASP 23 A LYS 24 n 24 LYS 24 A ASN 25 n 25 ASN 25 A PRO 26 n 26 PRO 26 A ARG 27 n 27 ARG 27 A GLY 28 n 28 GLY 28 A PHE 29 n 29 PHE 29 A ASN 30 n 30 ASN 30 A LEU 31 n 31 LEU 31 A LYS 32 n 32 LYS 32 A TYR 33 n 33 TYR 33 A ARG 34 n 34 ARG 34 A TYR 35 n 35 TYR 35 A GLU 36 n 36 GLU 36 A PHE 37 n 37 PHE 37 A ASN 38 n 38 ASN 38 A ASN 39 n 39 ASN 39 A ASP 40 n 40 ASP 40 A TRP 41 n 41 TRP 41 A GLY 42 n 42 GLY 42 A VAL 43 n 43 VAL 43 A ILE 44 n 44 ILE 44 A GLY 45 n 45 GLY 45 A SER 46 n 46 SER 46 A PHE 47 n 47 PHE 47 A ALA 48 n 48 ALA 48 A GLN 49 n 49 GLN 49 A THR 50 n 50 THR 50 A ARG 51 n 51 ARG 51 A ARG 52 n 52 ARG 52 A GLY 53 n 53 GLY 53 A PHE 54 n 54 PHE 54 A GLU 55 n 55 GLU 55 A GLU 56 n 56 GLU 56 A SER 57 n 57 SER 57 A VAL 58 n 58 VAL 58 A ASP 59 n 59 ASP 59 A GLY 60 n 60 GLY 60 A PHE 61 n 61 PHE 61 A LYS 62 n 62 LYS 62 A LEU 63 n 63 LEU 63 A ILE 64 n 64 ILE 64 A ASP 65 n 65 ASP 65 A GLY 66 n 66 GLY 66 A ASP 67 n 67 ASP 67 A PHE 68 n 68 PHE 68 A LYS 69 n 69 LYS 69 A TYR 70 n 70 TYR 70 A TYR 71 n 71 TYR 71 A SER 72 n 72 SER 72 A VAL 73 n 73 VAL 73 A THR 74 n 74 THR 74 A ALA 75 n 75 ALA 75 A GLY 76 n 76 GLY 76 A PRO 77 n 77 PRO 77 A VAL 78 n 78 VAL 78 A PHE 79 n 79 PHE 79 A ARG 80 n 80 ARG 80 A ILE 81 n 81 ILE 81 A ASN 82 n 82 ASN 82 A GLU 83 n 83 GLU 83 A TYR 84 n 84 TYR 84 A VAL 85 n 85 VAL 85 A SER 86 n 86 SER 86 A LEU 87 n 87 LEU 87 A TYR 88 n 88 TYR 88 A GLY 89 n 89 GLY 89 A LEU 90 n 90 LEU 90 A LEU 91 n 91 LEU 91 A GLY 92 n 92 GLY 92 A ALA 93 n 93 ALA 93 A GLY 94 n 94 GLY 94 A HIS 95 n 95 HIS 95 A GLY 96 n 96 GLY 96 A LYS 97 n 97 LYS 97 A ALA 98 n 98 ALA 98 A LYS 99 n 99 LYS 99 A PHE 100 n 100 PHE 100 A SER 101 n 101 SER 101 A SER 102 n 102 SER 102 A ILE 103 n 103 ILE 103 A PHE 104 n 104 PHE 104 A GLY 105 n 105 GLY 105 A GLN 106 n 106 GLN 106 A SER 107 n 107 SER 107 A GLU 108 n 108 GLU 108 A SER 109 n 109 SER 109 A ARG 110 n 110 ARG 110 A SER 111 n 111 SER 111 A LYS 112 n 112 LYS 112 A THR 113 n 113 THR 113 A SER 114 n 114 SER 114 A LEU 115 n 115 LEU 115 A ALA 116 n 116 ALA 116 A TYR 117 n 117 TYR 117 A GLY 118 n 118 GLY 118 A ALA 119 n 119 ALA 119 A GLY 120 n 120 GLY 120 A LEU 121 n 121 LEU 121 A GLN 122 n 122 GLN 122 A PHE 123 n 123 PHE 123 A ASN 124 n 124 ASN 124 A PRO 125 n 125 PRO 125 A HIS 126 n 126 HIS 126 A PRO 127 n 127 PRO 127 A ASN 128 n 128 ASN 128 A PHE 129 n 129 PHE 129 A VAL 130 n 130 VAL 130 A ILE 131 n 131 ILE 131 A ASP 132 n 132 ASP 132 A ALA 133 n 133 ALA 133 A SER 134 n 134 SER 134 A TYR 135 n 135 TYR 135 A GLU 136 n 136 GLU 136 A TYR 137 n 137 TYR 137 A SER 138 n 138 SER 138 A LYS 139 n 139 LYS 139 A LEU 140 n 140 LEU 140 A ASP 141 n 141 ASP 141 A ASP 142 n 142 ASP 142 A VAL 143 n 143 VAL 143 A LYS 144 n 144 LYS 144 A VAL 145 n 145 VAL 145 A GLY 146 n 146 GLY 146 A THR 147 n 147 THR 147 A TRP 148 n 148 TRP 148 A MET 149 n 149 MET 149 A LEU 150 n 150 LEU 150 A GLY 151 n 151 GLY 151 A ALA 152 n 152 ALA 152 A GLY 153 n 153 GLY 153 A TYR 154 n 154 TYR 154 A ARG 155 n 155 ARG 155 A PHE 156 n 156 PHE 156 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 5 A A H3 H GLU GLY 1 2 1.29 6 A A HH21 HE22 ARG GLN 34 122 1.29 7 A A HH11 HE22 ARG GLN 34 122 1.30 8 A A HH12 HH ARG TYR 34 88 1.28 9 A A HD1 H HIS ASN 126 128 1.24 10 A A O H ASN TYR 82 84 1.58 1 A LYS 21 50.17 178.17 1 A ASN 38 41.05 -126.67 1 A ASN 39 -158.86 -55.02 1 A LYS 62 55.44 164.55 1 A ASP 65 46.41 -97.59 1 A ASN 82 -126.71 -137.30 1 A TYR 84 -154.35 20.04 2 A LYS 24 55.09 -6.67 2 A GLU 36 81.45 163.82 2 A ASP 40 86.82 -66.14 2 A PHE 54 -112.11 73.71 2 A ASP 59 76.91 -16.56 2 A LYS 62 55.12 -165.97 2 A ASN 82 -127.86 -155.83 2 A TYR 84 -140.87 35.01 3 A LYS 24 50.33 7.94 3 A PHE 54 -60.73 77.97 3 A ASP 59 75.34 -50.88 3 A ASP 65 58.97 1.94 3 A GLU 83 56.54 1.80 4 A LYS 24 53.62 -2.76 4 A ASP 59 72.14 -48.38 4 A ASP 65 -61.06 70.08 4 A ASP 67 55.34 13.55 4 A ASN 82 -154.67 38.87 4 A GLU 83 72.57 -49.58 5 A LYS 21 56.97 125.90 5 A ASN 38 -130.72 -64.80 5 A ASN 39 -168.92 -78.78 5 A PHE 61 55.97 106.11 5 A LYS 62 -129.98 -123.94 5 A ASP 65 44.07 -113.16 5 A ASN 82 173.84 165.11 5 A GLU 83 45.20 -92.17 5 A TYR 84 -144.31 37.71 6 A LYS 21 41.37 -166.82 6 A ASN 38 46.90 -174.76 6 A ASP 59 41.50 -158.67 6 A ASP 65 61.06 -70.94 6 A ASN 82 -161.74 41.84 6 A GLU 83 67.28 -37.62 7 A LYS 21 -155.06 37.03 7 A LYS 24 48.70 12.59 7 A ASP 59 45.38 -177.55 7 A PHE 61 42.73 25.03 7 A ASP 65 37.63 -107.27 7 A ASN 82 162.90 -73.87 7 A GLU 83 -67.71 64.14 8 A LYS 24 55.63 -3.85 8 A ASN 38 -155.53 61.72 8 A ASN 39 52.66 -138.76 8 A ASP 40 38.68 -106.51 8 A ASP 59 42.65 -167.56 8 A ASP 65 -65.50 -162.64 8 A GLU 83 76.17 -21.03 9 A LYS 24 55.59 -6.73 9 A GLU 36 80.99 166.47 9 A ASP 40 -136.07 -38.46 9 A ASN 82 -134.73 -148.87 9 A TYR 84 -149.23 15.62 10 A LYS 21 -164.42 39.75 10 A LYS 24 52.39 3.80 10 A ASN 38 -170.77 99.58 10 A ASN 39 41.56 -117.78 10 A ASP 40 43.10 -98.91 10 A ASP 59 -162.36 92.87 10 A ASN 82 -156.72 31.72 10 A GLU 83 68.52 -42.66 lowest energy, model1 NMR structure of yersinia pestis Ail (attachment invasion locus) in decylphosphocholine micelles 1 N N MEMBRANE PROTEIN membrane protein Q8D0Z7_YERPE UNP 1 39 Q8D0Z7 EGESSISIGYAQSRVKEDGYKLDKNPRGFNLKYRYEFNNDWGVIGSFAQTRRGFEESVDGFKLIDGDFKYYSVTAGPVFR INEYVSLYGLLGAGHGKAKFSSIFGQSESRSKTSLAYGAGLQFNPHPNFVIDASYEYSKLDDVKVGTWMLGAGYRF 39 194 2N2M 1 156 Q8D0Z7 A 1 1 156 1 1 1 1 1 1 1 1 A SER 4 A SER 4 A VAL 15 A VAL 15 A ARG 27 A ARG 27 A TYR 35 A TYR 35 A GLY 42 A GLY 42 A ARG 51 A ARG 51 A LYS 69 A LYS 69 A ARG 80 A ARG 80 A VAL 85 A VAL 85 A LYS 99 A LYS 99 A SER 109 A SER 109 A PHE 123 A PHE 123 A VAL 130 A VAL 130 A LYS 139 A LYS 139 A LYS 144 A LYS 144 A TYR 154 A TYR 154