1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Marassi, F.M.
Ding, Y.
Yao, Y.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
NE
J.Biomol.Nmr
JBNME9
0800
0925-2738
63
59
65
10.1007/s10858-015-9963-2
26143069
Backbone structure of Yersinia pestis Ail determined in micelles by NMR-restrained simulated annealing with implicit membrane solvation.
2015
10.2210/pdb2n2m/pdb
pdb_00002n2m
17492.400
Outer membrane protein X
1
man
polymer
no
no
EGESSISIGYAQSRVKEDGYKLDKNPRGFNLKYRYEFNNDWGVIGSFAQTRRGFEESVDGFKLIDGDFKYYSVTAGPVFR
INEYVSLYGLLGAGHGKAKFSSIFGQSESRSKTSLAYGAGLQFNPHPNFVIDASYEYSKLDDVKVGTWMLGAGYRF
EGESSISIGYAQSRVKEDGYKLDKNPRGFNLKYRYEFNNDWGVIGSFAQTRRGFEESVDGFKLIDGDFKYYSVTAGPVFR
INEYVSLYGLLGAGHGKAKFSSIFGQSESRSKTSLAYGAGLQFNPHPNFVIDASYEYSKLDDVKVGTWMLGAGYRF
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
ompX, y1324
632
Yersinia pestis
562
Escherichia coli
Plasmid
pET
database_2
pdbx_database_status
pdbx_nmr_software
pdbx_nmr_spectrometer
repository
Initial release
Database references
Data collection
Database references
Other
1
0
2015-07-22
1
1
2015-10-07
1
2
2023-06-14
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_nmr_data
_pdbx_nmr_software.name
_pdbx_nmr_spectrometer.model
BMRB
Y
RCSB
2015-05-10
REL
REL
REL
REL
structures with the least restraint violations
100
10
1
2D 1H-15N HSQC
3D HNCA
3D HNCACB
3D 1H-15N NOESY
0.4-0.5
mM
[U-100% 13C; U-100% 15N]
20
mM
5
mM
170
mM
25
6.8
ambient
318
K
Structures were folded and refined using the standard nonbonded potential REPEL
simulated annealing
1
lowest energy
0.4-0.5 mM [U-100% 13C; U-100% 15N] Yersinia pestis Ail, 20 mM sodium phosphate, 5 mM sodium chloride, 170 mM decyl-phosphocholine (DePC), 90% H2O/10% D2O
90% H2O/10% D2O
Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
data analysis
NMRPipe
Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
chemical shift assignment
NMRPipe
Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
processing
NMRPipe
Cornilescu, Delaglio and Bax
chemical shift calculation
TALOS
Schwieters, Kuszewski, Tjandra and Clore
structure solution
X-PLOR NIH
Schwieters, Kuszewski, Tjandra and Clore
refinement
X-PLOR NIH
600
Bruker
AVANCE
Bruker Avance
GLU
1
n
1
GLU
1
A
GLY
2
n
2
GLY
2
A
GLU
3
n
3
GLU
3
A
SER
4
n
4
SER
4
A
SER
5
n
5
SER
5
A
ILE
6
n
6
ILE
6
A
SER
7
n
7
SER
7
A
ILE
8
n
8
ILE
8
A
GLY
9
n
9
GLY
9
A
TYR
10
n
10
TYR
10
A
ALA
11
n
11
ALA
11
A
GLN
12
n
12
GLN
12
A
SER
13
n
13
SER
13
A
ARG
14
n
14
ARG
14
A
VAL
15
n
15
VAL
15
A
LYS
16
n
16
LYS
16
A
GLU
17
n
17
GLU
17
A
ASP
18
n
18
ASP
18
A
GLY
19
n
19
GLY
19
A
TYR
20
n
20
TYR
20
A
LYS
21
n
21
LYS
21
A
LEU
22
n
22
LEU
22
A
ASP
23
n
23
ASP
23
A
LYS
24
n
24
LYS
24
A
ASN
25
n
25
ASN
25
A
PRO
26
n
26
PRO
26
A
ARG
27
n
27
ARG
27
A
GLY
28
n
28
GLY
28
A
PHE
29
n
29
PHE
29
A
ASN
30
n
30
ASN
30
A
LEU
31
n
31
LEU
31
A
LYS
32
n
32
LYS
32
A
TYR
33
n
33
TYR
33
A
ARG
34
n
34
ARG
34
A
TYR
35
n
35
TYR
35
A
GLU
36
n
36
GLU
36
A
PHE
37
n
37
PHE
37
A
ASN
38
n
38
ASN
38
A
ASN
39
n
39
ASN
39
A
ASP
40
n
40
ASP
40
A
TRP
41
n
41
TRP
41
A
GLY
42
n
42
GLY
42
A
VAL
43
n
43
VAL
43
A
ILE
44
n
44
ILE
44
A
GLY
45
n
45
GLY
45
A
SER
46
n
46
SER
46
A
PHE
47
n
47
PHE
47
A
ALA
48
n
48
ALA
48
A
GLN
49
n
49
GLN
49
A
THR
50
n
50
THR
50
A
ARG
51
n
51
ARG
51
A
ARG
52
n
52
ARG
52
A
GLY
53
n
53
GLY
53
A
PHE
54
n
54
PHE
54
A
GLU
55
n
55
GLU
55
A
GLU
56
n
56
GLU
56
A
SER
57
n
57
SER
57
A
VAL
58
n
58
VAL
58
A
ASP
59
n
59
ASP
59
A
GLY
60
n
60
GLY
60
A
PHE
61
n
61
PHE
61
A
LYS
62
n
62
LYS
62
A
LEU
63
n
63
LEU
63
A
ILE
64
n
64
ILE
64
A
ASP
65
n
65
ASP
65
A
GLY
66
n
66
GLY
66
A
ASP
67
n
67
ASP
67
A
PHE
68
n
68
PHE
68
A
LYS
69
n
69
LYS
69
A
TYR
70
n
70
TYR
70
A
TYR
71
n
71
TYR
71
A
SER
72
n
72
SER
72
A
VAL
73
n
73
VAL
73
A
THR
74
n
74
THR
74
A
ALA
75
n
75
ALA
75
A
GLY
76
n
76
GLY
76
A
PRO
77
n
77
PRO
77
A
VAL
78
n
78
VAL
78
A
PHE
79
n
79
PHE
79
A
ARG
80
n
80
ARG
80
A
ILE
81
n
81
ILE
81
A
ASN
82
n
82
ASN
82
A
GLU
83
n
83
GLU
83
A
TYR
84
n
84
TYR
84
A
VAL
85
n
85
VAL
85
A
SER
86
n
86
SER
86
A
LEU
87
n
87
LEU
87
A
TYR
88
n
88
TYR
88
A
GLY
89
n
89
GLY
89
A
LEU
90
n
90
LEU
90
A
LEU
91
n
91
LEU
91
A
GLY
92
n
92
GLY
92
A
ALA
93
n
93
ALA
93
A
GLY
94
n
94
GLY
94
A
HIS
95
n
95
HIS
95
A
GLY
96
n
96
GLY
96
A
LYS
97
n
97
LYS
97
A
ALA
98
n
98
ALA
98
A
LYS
99
n
99
LYS
99
A
PHE
100
n
100
PHE
100
A
SER
101
n
101
SER
101
A
SER
102
n
102
SER
102
A
ILE
103
n
103
ILE
103
A
PHE
104
n
104
PHE
104
A
GLY
105
n
105
GLY
105
A
GLN
106
n
106
GLN
106
A
SER
107
n
107
SER
107
A
GLU
108
n
108
GLU
108
A
SER
109
n
109
SER
109
A
ARG
110
n
110
ARG
110
A
SER
111
n
111
SER
111
A
LYS
112
n
112
LYS
112
A
THR
113
n
113
THR
113
A
SER
114
n
114
SER
114
A
LEU
115
n
115
LEU
115
A
ALA
116
n
116
ALA
116
A
TYR
117
n
117
TYR
117
A
GLY
118
n
118
GLY
118
A
ALA
119
n
119
ALA
119
A
GLY
120
n
120
GLY
120
A
LEU
121
n
121
LEU
121
A
GLN
122
n
122
GLN
122
A
PHE
123
n
123
PHE
123
A
ASN
124
n
124
ASN
124
A
PRO
125
n
125
PRO
125
A
HIS
126
n
126
HIS
126
A
PRO
127
n
127
PRO
127
A
ASN
128
n
128
ASN
128
A
PHE
129
n
129
PHE
129
A
VAL
130
n
130
VAL
130
A
ILE
131
n
131
ILE
131
A
ASP
132
n
132
ASP
132
A
ALA
133
n
133
ALA
133
A
SER
134
n
134
SER
134
A
TYR
135
n
135
TYR
135
A
GLU
136
n
136
GLU
136
A
TYR
137
n
137
TYR
137
A
SER
138
n
138
SER
138
A
LYS
139
n
139
LYS
139
A
LEU
140
n
140
LEU
140
A
ASP
141
n
141
ASP
141
A
ASP
142
n
142
ASP
142
A
VAL
143
n
143
VAL
143
A
LYS
144
n
144
LYS
144
A
VAL
145
n
145
VAL
145
A
GLY
146
n
146
GLY
146
A
THR
147
n
147
THR
147
A
TRP
148
n
148
TRP
148
A
MET
149
n
149
MET
149
A
LEU
150
n
150
LEU
150
A
GLY
151
n
151
GLY
151
A
ALA
152
n
152
ALA
152
A
GLY
153
n
153
GLY
153
A
TYR
154
n
154
TYR
154
A
ARG
155
n
155
ARG
155
A
PHE
156
n
156
PHE
156
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
5
A
A
H3
H
GLU
GLY
1
2
1.29
6
A
A
HH21
HE22
ARG
GLN
34
122
1.29
7
A
A
HH11
HE22
ARG
GLN
34
122
1.30
8
A
A
HH12
HH
ARG
TYR
34
88
1.28
9
A
A
HD1
H
HIS
ASN
126
128
1.24
10
A
A
O
H
ASN
TYR
82
84
1.58
1
A
LYS
21
50.17
178.17
1
A
ASN
38
41.05
-126.67
1
A
ASN
39
-158.86
-55.02
1
A
LYS
62
55.44
164.55
1
A
ASP
65
46.41
-97.59
1
A
ASN
82
-126.71
-137.30
1
A
TYR
84
-154.35
20.04
2
A
LYS
24
55.09
-6.67
2
A
GLU
36
81.45
163.82
2
A
ASP
40
86.82
-66.14
2
A
PHE
54
-112.11
73.71
2
A
ASP
59
76.91
-16.56
2
A
LYS
62
55.12
-165.97
2
A
ASN
82
-127.86
-155.83
2
A
TYR
84
-140.87
35.01
3
A
LYS
24
50.33
7.94
3
A
PHE
54
-60.73
77.97
3
A
ASP
59
75.34
-50.88
3
A
ASP
65
58.97
1.94
3
A
GLU
83
56.54
1.80
4
A
LYS
24
53.62
-2.76
4
A
ASP
59
72.14
-48.38
4
A
ASP
65
-61.06
70.08
4
A
ASP
67
55.34
13.55
4
A
ASN
82
-154.67
38.87
4
A
GLU
83
72.57
-49.58
5
A
LYS
21
56.97
125.90
5
A
ASN
38
-130.72
-64.80
5
A
ASN
39
-168.92
-78.78
5
A
PHE
61
55.97
106.11
5
A
LYS
62
-129.98
-123.94
5
A
ASP
65
44.07
-113.16
5
A
ASN
82
173.84
165.11
5
A
GLU
83
45.20
-92.17
5
A
TYR
84
-144.31
37.71
6
A
LYS
21
41.37
-166.82
6
A
ASN
38
46.90
-174.76
6
A
ASP
59
41.50
-158.67
6
A
ASP
65
61.06
-70.94
6
A
ASN
82
-161.74
41.84
6
A
GLU
83
67.28
-37.62
7
A
LYS
21
-155.06
37.03
7
A
LYS
24
48.70
12.59
7
A
ASP
59
45.38
-177.55
7
A
PHE
61
42.73
25.03
7
A
ASP
65
37.63
-107.27
7
A
ASN
82
162.90
-73.87
7
A
GLU
83
-67.71
64.14
8
A
LYS
24
55.63
-3.85
8
A
ASN
38
-155.53
61.72
8
A
ASN
39
52.66
-138.76
8
A
ASP
40
38.68
-106.51
8
A
ASP
59
42.65
-167.56
8
A
ASP
65
-65.50
-162.64
8
A
GLU
83
76.17
-21.03
9
A
LYS
24
55.59
-6.73
9
A
GLU
36
80.99
166.47
9
A
ASP
40
-136.07
-38.46
9
A
ASN
82
-134.73
-148.87
9
A
TYR
84
-149.23
15.62
10
A
LYS
21
-164.42
39.75
10
A
LYS
24
52.39
3.80
10
A
ASN
38
-170.77
99.58
10
A
ASN
39
41.56
-117.78
10
A
ASP
40
43.10
-98.91
10
A
ASP
59
-162.36
92.87
10
A
ASN
82
-156.72
31.72
10
A
GLU
83
68.52
-42.66
lowest energy, model1
NMR structure of yersinia pestis Ail (attachment invasion locus) in decylphosphocholine micelles
1
N
N
MEMBRANE PROTEIN
membrane protein
Q8D0Z7_YERPE
UNP
1
39
Q8D0Z7
EGESSISIGYAQSRVKEDGYKLDKNPRGFNLKYRYEFNNDWGVIGSFAQTRRGFEESVDGFKLIDGDFKYYSVTAGPVFR
INEYVSLYGLLGAGHGKAKFSSIFGQSESRSKTSLAYGAGLQFNPHPNFVIDASYEYSKLDDVKVGTWMLGAGYRF
39
194
2N2M
1
156
Q8D0Z7
A
1
1
156
1
1
1
1
1
1
1
1
A
SER
4
A
SER
4
A
VAL
15
A
VAL
15
A
ARG
27
A
ARG
27
A
TYR
35
A
TYR
35
A
GLY
42
A
GLY
42
A
ARG
51
A
ARG
51
A
LYS
69
A
LYS
69
A
ARG
80
A
ARG
80
A
VAL
85
A
VAL
85
A
LYS
99
A
LYS
99
A
SER
109
A
SER
109
A
PHE
123
A
PHE
123
A
VAL
130
A
VAL
130
A
LYS
139
A
LYS
139
A
LYS
144
A
LYS
144
A
TYR
154
A
TYR
154