1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Proudfoot, A.K.
Serrano, P.
Geralt, M.
Wuthrich, K.
Joint Center for Structural Genomics (JCSG)
Partnership for Stem Cell Biology (STEMCELL)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be Published
0353
NMR Structure of the homeodomain transcription factor Gbx1[E23R,R58E] from Homo sapiens
10.2210/pdb2n8g/pdb
pdb_00002n8g
8316.675
Homeobox protein GBX-1
Homeodomain (UNP residues 256-325)
E23R, R58E
1
man
polymer
Gastrulation and brain-specific homeobox protein 1
no
no
GAPGGKSRRRRTAFTSEQLLELRKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNERAKWKRIKAGNVS
GAPGGKSRRRRTAFTSEQLLELRKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNERAKWKRIKAGNVS
A
JCSG-424577
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
GBX1
9606
Homo sapiens
469008
Escherichia coli
BL21(DE3)
plasmid
pET28b
Joint Center for Structural Genomics
JCSG
PSI:Biology
Partnership for Stem Cell Biology
STEMCELL
PSI:Biology
database_2
pdbx_database_status
pdbx_nmr_spectrometer
struct_ref_seq_dif
repository
Initial release
Data collection
Database references
Other
1
0
2015-10-28
1
1
2023-06-14
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_nmr_data
_pdbx_nmr_spectrometer.model
_struct_ref_seq_dif.details
Y
BMRB
Y
RCSB
2015-10-15
REL
REL
REL
REL
1126
346
155
342
283
target function
80
20
2D 1H-15N HSQC
3D HNCA
3D HNCACB
3D 1H-15N NOESY
3D 1H-13C NOESY aliphatic
3D 1H-13C NOESY aromatic
1.2
mM
[U-99% 13C; U-98% 15N]
20
mM
50
mM
5
mM
0.0798
6.0
ambient
308
K
molecular dynamics
1
lowest energy
1.2 mM [U-99% 13C; U-98% 15N] protein, 20 mM sodium phosphate, 50 mM sodium chloride, 5 mM sodium azide, 95% H2O/5% D2O
95% H2O/5% D2O
Guntert, P. et al.
refinement
DYANA
Luginbuhl, P. et al.
refinement
OPAL
600
Bruker
AVANCE
Bruker Avance
800
Bruker
AVANCE
Bruker Avance
GLY
1
n
1
GLY
1
A
ALA
2
n
2
ALA
2
A
PRO
3
n
3
PRO
3
A
GLY
4
n
4
GLY
4
A
GLY
5
n
5
GLY
5
A
LYS
6
n
6
LYS
6
A
SER
7
n
7
SER
7
A
ARG
8
n
8
ARG
8
A
ARG
9
n
9
ARG
9
A
ARG
10
n
10
ARG
10
A
ARG
11
n
11
ARG
11
A
THR
12
n
12
THR
12
A
ALA
13
n
13
ALA
13
A
PHE
14
n
14
PHE
14
A
THR
15
n
15
THR
15
A
SER
16
n
16
SER
16
A
GLU
17
n
17
GLU
17
A
GLN
18
n
18
GLN
18
A
LEU
19
n
19
LEU
19
A
LEU
20
n
20
LEU
20
A
GLU
21
n
21
GLU
21
A
LEU
22
n
22
LEU
22
A
ARG
23
n
23
ARG
23
A
LYS
24
n
24
LYS
24
A
GLU
25
n
25
GLU
25
A
PHE
26
n
26
PHE
26
A
HIS
27
n
27
HIS
27
A
CYS
28
n
28
CYS
28
A
LYS
29
n
29
LYS
29
A
LYS
30
n
30
LYS
30
A
TYR
31
n
31
TYR
31
A
LEU
32
n
32
LEU
32
A
SER
33
n
33
SER
33
A
LEU
34
n
34
LEU
34
A
THR
35
n
35
THR
35
A
GLU
36
n
36
GLU
36
A
ARG
37
n
37
ARG
37
A
SER
38
n
38
SER
38
A
GLN
39
n
39
GLN
39
A
ILE
40
n
40
ILE
40
A
ALA
41
n
41
ALA
41
A
HIS
42
n
42
HIS
42
A
ALA
43
n
43
ALA
43
A
LEU
44
n
44
LEU
44
A
LYS
45
n
45
LYS
45
A
LEU
46
n
46
LEU
46
A
SER
47
n
47
SER
47
A
GLU
48
n
48
GLU
48
A
VAL
49
n
49
VAL
49
A
GLN
50
n
50
GLN
50
A
VAL
51
n
51
VAL
51
A
LYS
52
n
52
LYS
52
A
ILE
53
n
53
ILE
53
A
TRP
54
n
54
TRP
54
A
PHE
55
n
55
PHE
55
A
GLN
56
n
56
GLN
56
A
ASN
57
n
57
ASN
57
A
GLU
58
n
58
GLU
58
A
ARG
59
n
59
ARG
59
A
ALA
60
n
60
ALA
60
A
LYS
61
n
61
LYS
61
A
TRP
62
n
62
TRP
62
A
LYS
63
n
63
LYS
63
A
ARG
64
n
64
ARG
64
A
ILE
65
n
65
ILE
65
A
LYS
66
n
66
LYS
66
A
ALA
67
n
67
ALA
67
A
GLY
68
n
68
GLY
68
A
ASN
69
n
69
ASN
69
A
VAL
70
n
70
VAL
70
A
SER
71
n
71
SER
71
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
18
A
A
VAL
SER
70
71
-122.75
2
A
ARG
59
0.113
SIDE CHAIN
3
A
ARG
9
0.088
SIDE CHAIN
4
A
ARG
8
0.122
SIDE CHAIN
5
A
ARG
9
0.117
SIDE CHAIN
5
A
ARG
10
0.091
SIDE CHAIN
7
A
ARG
10
0.088
SIDE CHAIN
7
A
ARG
11
0.081
SIDE CHAIN
10
A
ARG
64
0.126
SIDE CHAIN
11
A
ARG
11
0.077
SIDE CHAIN
11
A
ARG
64
0.090
SIDE CHAIN
12
A
ARG
37
0.136
SIDE CHAIN
13
A
ARG
10
0.101
SIDE CHAIN
16
A
ARG
23
0.120
SIDE CHAIN
17
A
ARG
37
0.083
SIDE CHAIN
18
A
ARG
11
0.097
SIDE CHAIN
18
A
ARG
64
0.129
SIDE CHAIN
19
A
ARG
10
0.078
SIDE CHAIN
20
A
ARG
11
0.085
SIDE CHAIN
20
A
ARG
37
0.127
SIDE CHAIN
2
-3.19
0.50
120.30
117.11
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
11
11
11
N
8
8.89
1.40
123.60
132.49
A
A
A
CD
NE
CZ
ARG
ARG
ARG
10
10
10
N
14
-3.91
0.50
120.30
116.39
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
37
37
37
N
1
A
ALA
2
45.83
71.84
1
A
ARG
10
47.21
-164.71
1
A
CYS
28
-87.84
-76.35
1
A
LYS
66
-69.58
87.34
1
A
ASN
69
-145.23
16.55
2
A
ARG
9
-146.02
15.17
2
A
ALA
13
-59.07
94.68
2
A
LYS
45
54.07
9.44
2
A
ILE
65
-63.87
-74.25
2
A
LYS
66
44.91
12.70
3
A
LYS
6
-110.23
64.24
3
A
ARG
11
-64.86
99.89
3
A
ASN
69
-152.26
21.90
4
A
ALA
2
70.55
144.38
4
A
LYS
6
47.59
29.81
4
A
ARG
10
44.68
72.84
4
A
CYS
28
-134.39
-50.62
4
A
LYS
45
55.57
17.96
4
A
LYS
66
-68.42
70.34
5
A
ARG
10
-157.21
42.34
5
A
LYS
45
57.64
6.70
5
A
ALA
67
73.77
83.55
5
A
ASN
69
-159.84
47.37
6
A
ARG
10
-76.44
32.28
6
A
ALA
13
-64.94
95.51
6
A
LYS
45
54.61
13.04
7
A
SER
7
-163.21
102.20
7
A
ARG
8
43.08
79.21
7
A
ALA
13
-67.77
34.73
7
A
LYS
66
-58.34
62.62
7
A
ASN
69
-158.52
26.40
8
A
LYS
6
-164.45
-54.78
8
A
SER
7
58.53
4.97
8
A
ARG
9
75.11
123.93
8
A
LYS
45
48.33
29.71
8
A
LYS
66
-59.24
-9.37
8
A
ALA
67
44.74
79.14
8
A
ASN
69
-148.51
37.90
9
A
LYS
6
-157.29
41.17
9
A
ALA
13
-69.25
85.43
9
A
CYS
28
-105.46
-68.75
9
A
LYS
45
56.55
3.98
9
A
ALA
67
70.99
-58.41
10
A
ARG
8
174.35
147.36
10
A
ARG
9
-154.62
78.79
10
A
ARG
11
45.56
84.07
10
A
ALA
13
-53.72
95.19
10
A
LYS
66
-61.63
80.11
10
A
ASN
69
-140.61
34.66
11
A
THR
12
74.55
166.14
11
A
SER
33
-58.87
175.01
11
A
LYS
66
-67.85
49.65
12
A
ARG
10
48.56
74.29
12
A
LYS
45
56.01
16.37
12
A
LYS
66
-65.26
79.15
12
A
VAL
70
-69.76
32.08
13
A
CYS
28
-127.36
-53.02
13
A
LYS
63
-62.58
1.11
13
A
ILE
65
-67.61
-79.92
13
A
LYS
66
45.66
-6.01
13
A
ASN
69
-148.06
32.51
14
A
SER
7
65.91
-34.74
14
A
ARG
10
46.89
-178.26
14
A
ALA
13
74.97
34.71
14
A
LYS
66
-69.25
82.26
15
A
SER
7
-143.98
-85.17
15
A
ARG
9
67.06
174.49
15
A
ARG
10
57.75
74.88
15
A
ARG
11
-72.78
-164.71
15
A
ALA
13
-69.63
96.15
15
A
CYS
28
-96.28
-85.41
15
A
ILE
65
-87.66
-83.76
16
A
ALA
13
-61.42
97.57
16
A
CYS
28
-113.44
-85.79
16
A
ALA
67
75.20
-4.50
16
A
ASN
69
-67.33
86.44
17
A
ALA
2
50.87
85.40
17
A
LYS
6
-153.72
53.29
17
A
SER
7
62.21
93.10
17
A
ARG
10
-150.39
45.04
17
A
ALA
13
-79.54
37.24
17
A
CYS
28
-148.80
-56.59
17
A
LYS
45
55.41
11.59
17
A
LYS
66
-59.39
87.72
17
A
ASN
69
-155.25
44.17
18
A
PRO
3
-68.91
-176.76
18
A
SER
7
-140.12
-84.13
18
A
ARG
9
-74.32
-72.14
18
A
LYS
45
59.23
18.90
18
A
LYS
66
-67.60
53.57
18
A
ASN
69
-168.33
28.46
19
A
ARG
8
54.55
18.03
19
A
ARG
11
179.61
147.03
19
A
THR
12
-78.59
-166.87
19
A
ALA
13
-77.76
34.45
19
A
ASN
69
-146.78
13.66
20
A
ALA
2
58.08
75.76
20
A
ARG
8
-144.57
51.81
20
A
LYS
45
59.94
19.01
20
A
LYS
66
-67.73
77.17
20
A
VAL
70
-68.55
81.90
NMR Structure of the homeodomain transcription factor Gbx1[E23R,R58E] from Homo sapiens
1
N
N
A
THR
15
A
THR
15
HELX_P
A
LYS
29
A
LYS
29
1
1
15
A
SER
33
A
SER
33
HELX_P
A
ALA
43
A
ALA
43
1
2
11
A
SER
47
A
SER
47
HELX_P
A
ARG
64
A
ARG
64
1
3
18
DNA BINDING PROTEIN
Homeodomain, DNA binding protein, Mutant, PSI-Biology, Structural Genomics, Joint Center for Structural Genomics, JCSG, Partnership for Stem Cell Biology, STEMCELL
GBX1_HUMAN
UNP
1
256
Q14549
APGGKSRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRIKAGNVS
256
325
2N8G
2
71
Q14549
A
1
2
71
1
expression tag
GLY
1
2N8G
A
Q14549
UNP
1
1
GLU
engineered mutation
ARG
23
2N8G
A
Q14549
UNP
277
23
1
ARG
engineered mutation
GLU
58
2N8G
A
Q14549
UNP
312
58