1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Proudfoot, A.K. Serrano, P. Geralt, M. Wuthrich, K. Joint Center for Structural Genomics (JCSG) Partnership for Stem Cell Biology (STEMCELL) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking To be Published 0353 NMR Structure of the homeodomain transcription factor Gbx1[E23R,R58E] from Homo sapiens 10.2210/pdb2n8g/pdb pdb_00002n8g 8316.675 Homeobox protein GBX-1 Homeodomain (UNP residues 256-325) E23R, R58E 1 man polymer Gastrulation and brain-specific homeobox protein 1 no no GAPGGKSRRRRTAFTSEQLLELRKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNERAKWKRIKAGNVS GAPGGKSRRRRTAFTSEQLLELRKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNERAKWKRIKAGNVS A JCSG-424577 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample GBX1 9606 Homo sapiens 469008 Escherichia coli BL21(DE3) plasmid pET28b Joint Center for Structural Genomics JCSG PSI:Biology Partnership for Stem Cell Biology STEMCELL PSI:Biology database_2 pdbx_database_status pdbx_nmr_spectrometer struct_ref_seq_dif repository Initial release Data collection Database references Other 1 0 2015-10-28 1 1 2023-06-14 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.status_code_nmr_data _pdbx_nmr_spectrometer.model _struct_ref_seq_dif.details Y BMRB Y RCSB 2015-10-15 REL REL REL REL 1126 346 155 342 283 target function 80 20 2D 1H-15N HSQC 3D HNCA 3D HNCACB 3D 1H-15N NOESY 3D 1H-13C NOESY aliphatic 3D 1H-13C NOESY aromatic 1.2 mM [U-99% 13C; U-98% 15N] 20 mM 50 mM 5 mM 0.0798 6.0 ambient 308 K molecular dynamics 1 lowest energy 1.2 mM [U-99% 13C; U-98% 15N] protein, 20 mM sodium phosphate, 50 mM sodium chloride, 5 mM sodium azide, 95% H2O/5% D2O 95% H2O/5% D2O Guntert, P. et al. refinement DYANA Luginbuhl, P. et al. refinement OPAL 600 Bruker AVANCE Bruker Avance 800 Bruker AVANCE Bruker Avance GLY 1 n 1 GLY 1 A ALA 2 n 2 ALA 2 A PRO 3 n 3 PRO 3 A GLY 4 n 4 GLY 4 A GLY 5 n 5 GLY 5 A LYS 6 n 6 LYS 6 A SER 7 n 7 SER 7 A ARG 8 n 8 ARG 8 A ARG 9 n 9 ARG 9 A ARG 10 n 10 ARG 10 A ARG 11 n 11 ARG 11 A THR 12 n 12 THR 12 A ALA 13 n 13 ALA 13 A PHE 14 n 14 PHE 14 A THR 15 n 15 THR 15 A SER 16 n 16 SER 16 A GLU 17 n 17 GLU 17 A GLN 18 n 18 GLN 18 A LEU 19 n 19 LEU 19 A LEU 20 n 20 LEU 20 A GLU 21 n 21 GLU 21 A LEU 22 n 22 LEU 22 A ARG 23 n 23 ARG 23 A LYS 24 n 24 LYS 24 A GLU 25 n 25 GLU 25 A PHE 26 n 26 PHE 26 A HIS 27 n 27 HIS 27 A CYS 28 n 28 CYS 28 A LYS 29 n 29 LYS 29 A LYS 30 n 30 LYS 30 A TYR 31 n 31 TYR 31 A LEU 32 n 32 LEU 32 A SER 33 n 33 SER 33 A LEU 34 n 34 LEU 34 A THR 35 n 35 THR 35 A GLU 36 n 36 GLU 36 A ARG 37 n 37 ARG 37 A SER 38 n 38 SER 38 A GLN 39 n 39 GLN 39 A ILE 40 n 40 ILE 40 A ALA 41 n 41 ALA 41 A HIS 42 n 42 HIS 42 A ALA 43 n 43 ALA 43 A LEU 44 n 44 LEU 44 A LYS 45 n 45 LYS 45 A LEU 46 n 46 LEU 46 A SER 47 n 47 SER 47 A GLU 48 n 48 GLU 48 A VAL 49 n 49 VAL 49 A GLN 50 n 50 GLN 50 A VAL 51 n 51 VAL 51 A LYS 52 n 52 LYS 52 A ILE 53 n 53 ILE 53 A TRP 54 n 54 TRP 54 A PHE 55 n 55 PHE 55 A GLN 56 n 56 GLN 56 A ASN 57 n 57 ASN 57 A GLU 58 n 58 GLU 58 A ARG 59 n 59 ARG 59 A ALA 60 n 60 ALA 60 A LYS 61 n 61 LYS 61 A TRP 62 n 62 TRP 62 A LYS 63 n 63 LYS 63 A ARG 64 n 64 ARG 64 A ILE 65 n 65 ILE 65 A LYS 66 n 66 LYS 66 A ALA 67 n 67 ALA 67 A GLY 68 n 68 GLY 68 A ASN 69 n 69 ASN 69 A VAL 70 n 70 VAL 70 A SER 71 n 71 SER 71 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 18 A A VAL SER 70 71 -122.75 2 A ARG 59 0.113 SIDE CHAIN 3 A ARG 9 0.088 SIDE CHAIN 4 A ARG 8 0.122 SIDE CHAIN 5 A ARG 9 0.117 SIDE CHAIN 5 A ARG 10 0.091 SIDE CHAIN 7 A ARG 10 0.088 SIDE CHAIN 7 A ARG 11 0.081 SIDE CHAIN 10 A ARG 64 0.126 SIDE CHAIN 11 A ARG 11 0.077 SIDE CHAIN 11 A ARG 64 0.090 SIDE CHAIN 12 A ARG 37 0.136 SIDE CHAIN 13 A ARG 10 0.101 SIDE CHAIN 16 A ARG 23 0.120 SIDE CHAIN 17 A ARG 37 0.083 SIDE CHAIN 18 A ARG 11 0.097 SIDE CHAIN 18 A ARG 64 0.129 SIDE CHAIN 19 A ARG 10 0.078 SIDE CHAIN 20 A ARG 11 0.085 SIDE CHAIN 20 A ARG 37 0.127 SIDE CHAIN 2 -3.19 0.50 120.30 117.11 A A A NE CZ NH2 ARG ARG ARG 11 11 11 N 8 8.89 1.40 123.60 132.49 A A A CD NE CZ ARG ARG ARG 10 10 10 N 14 -3.91 0.50 120.30 116.39 A A A NE CZ NH2 ARG ARG ARG 37 37 37 N 1 A ALA 2 45.83 71.84 1 A ARG 10 47.21 -164.71 1 A CYS 28 -87.84 -76.35 1 A LYS 66 -69.58 87.34 1 A ASN 69 -145.23 16.55 2 A ARG 9 -146.02 15.17 2 A ALA 13 -59.07 94.68 2 A LYS 45 54.07 9.44 2 A ILE 65 -63.87 -74.25 2 A LYS 66 44.91 12.70 3 A LYS 6 -110.23 64.24 3 A ARG 11 -64.86 99.89 3 A ASN 69 -152.26 21.90 4 A ALA 2 70.55 144.38 4 A LYS 6 47.59 29.81 4 A ARG 10 44.68 72.84 4 A CYS 28 -134.39 -50.62 4 A LYS 45 55.57 17.96 4 A LYS 66 -68.42 70.34 5 A ARG 10 -157.21 42.34 5 A LYS 45 57.64 6.70 5 A ALA 67 73.77 83.55 5 A ASN 69 -159.84 47.37 6 A ARG 10 -76.44 32.28 6 A ALA 13 -64.94 95.51 6 A LYS 45 54.61 13.04 7 A SER 7 -163.21 102.20 7 A ARG 8 43.08 79.21 7 A ALA 13 -67.77 34.73 7 A LYS 66 -58.34 62.62 7 A ASN 69 -158.52 26.40 8 A LYS 6 -164.45 -54.78 8 A SER 7 58.53 4.97 8 A ARG 9 75.11 123.93 8 A LYS 45 48.33 29.71 8 A LYS 66 -59.24 -9.37 8 A ALA 67 44.74 79.14 8 A ASN 69 -148.51 37.90 9 A LYS 6 -157.29 41.17 9 A ALA 13 -69.25 85.43 9 A CYS 28 -105.46 -68.75 9 A LYS 45 56.55 3.98 9 A ALA 67 70.99 -58.41 10 A ARG 8 174.35 147.36 10 A ARG 9 -154.62 78.79 10 A ARG 11 45.56 84.07 10 A ALA 13 -53.72 95.19 10 A LYS 66 -61.63 80.11 10 A ASN 69 -140.61 34.66 11 A THR 12 74.55 166.14 11 A SER 33 -58.87 175.01 11 A LYS 66 -67.85 49.65 12 A ARG 10 48.56 74.29 12 A LYS 45 56.01 16.37 12 A LYS 66 -65.26 79.15 12 A VAL 70 -69.76 32.08 13 A CYS 28 -127.36 -53.02 13 A LYS 63 -62.58 1.11 13 A ILE 65 -67.61 -79.92 13 A LYS 66 45.66 -6.01 13 A ASN 69 -148.06 32.51 14 A SER 7 65.91 -34.74 14 A ARG 10 46.89 -178.26 14 A ALA 13 74.97 34.71 14 A LYS 66 -69.25 82.26 15 A SER 7 -143.98 -85.17 15 A ARG 9 67.06 174.49 15 A ARG 10 57.75 74.88 15 A ARG 11 -72.78 -164.71 15 A ALA 13 -69.63 96.15 15 A CYS 28 -96.28 -85.41 15 A ILE 65 -87.66 -83.76 16 A ALA 13 -61.42 97.57 16 A CYS 28 -113.44 -85.79 16 A ALA 67 75.20 -4.50 16 A ASN 69 -67.33 86.44 17 A ALA 2 50.87 85.40 17 A LYS 6 -153.72 53.29 17 A SER 7 62.21 93.10 17 A ARG 10 -150.39 45.04 17 A ALA 13 -79.54 37.24 17 A CYS 28 -148.80 -56.59 17 A LYS 45 55.41 11.59 17 A LYS 66 -59.39 87.72 17 A ASN 69 -155.25 44.17 18 A PRO 3 -68.91 -176.76 18 A SER 7 -140.12 -84.13 18 A ARG 9 -74.32 -72.14 18 A LYS 45 59.23 18.90 18 A LYS 66 -67.60 53.57 18 A ASN 69 -168.33 28.46 19 A ARG 8 54.55 18.03 19 A ARG 11 179.61 147.03 19 A THR 12 -78.59 -166.87 19 A ALA 13 -77.76 34.45 19 A ASN 69 -146.78 13.66 20 A ALA 2 58.08 75.76 20 A ARG 8 -144.57 51.81 20 A LYS 45 59.94 19.01 20 A LYS 66 -67.73 77.17 20 A VAL 70 -68.55 81.90 NMR Structure of the homeodomain transcription factor Gbx1[E23R,R58E] from Homo sapiens 1 N N A THR 15 A THR 15 HELX_P A LYS 29 A LYS 29 1 1 15 A SER 33 A SER 33 HELX_P A ALA 43 A ALA 43 1 2 11 A SER 47 A SER 47 HELX_P A ARG 64 A ARG 64 1 3 18 DNA BINDING PROTEIN Homeodomain, DNA binding protein, Mutant, PSI-Biology, Structural Genomics, Joint Center for Structural Genomics, JCSG, Partnership for Stem Cell Biology, STEMCELL GBX1_HUMAN UNP 1 256 Q14549 APGGKSRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRIKAGNVS 256 325 2N8G 2 71 Q14549 A 1 2 71 1 expression tag GLY 1 2N8G A Q14549 UNP 1 1 GLU engineered mutation ARG 23 2N8G A Q14549 UNP 277 23 1 ARG engineered mutation GLU 58 2N8G A Q14549 UNP 312 58