1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Serrano, P.
Wuthrich, K.
Beuck, C.
Joint Center for Structural Genomics (JCSG)
Partnership for T-Cell Biology (TCELL)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be Published
0353
NMR structure of the acidic domain of SYNCRIP
12932.473
Heterogeneous nuclear ribonucleoprotein Q
1
man
polymer
hnRNP Q, Glycine- and tyrosine-rich RNA-binding protein, GRY-RBP, NS1-associated protein 1, Synaptotagmin-binding, cytoplasmic RNA-interacting protein
no
no
GSENFQTLLDAGLPQKVAEKLDEIYVAGLVAHSDLDERAIEALKEFNEDGALAVLQQFKDSDLSHVQNKSAFLCGVMKTY
RQREKQGTKVADSSKGPDEAKIKALLERTGYTLDVTTG
GSENFQTLLDAGLPQKVAEKLDEIYVAGLVAHSDLDERAIEALKEFNEDGALAVLQQFKDSDLSHVQNKSAFLCGVMKTY
RQREKQGTKVADSSKGPDEAKIKALLERTGYTLDVTTG
A
JCSG-430615
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
SYNCRIP, HNRPQ, NSAP1
9606
Homo sapiens
562
Escherichia coli
plasmid
pET28b
Joint Center for Structural Genomics
JCSG
PSI:Biology
Partnership for T-Cell Biology
TCELL
PSI:Biology
repository
Initial release
1
0
2016-06-01
Y
BMRB
Y
RCSB
2016-02-02
REL
REL
REL
1659
471
274
372
449
structures with the least restraint violations
80
19
1
APSY 4D-HACANH
APSY 5D-HACACONH
APSY 5D-CBCACONH
2D 1H-15N HSQC
3D 1H-15N NOESY
3D 1H-13C NOESY aliphatic
3D 1H-13C NOESY aromatic
1.2
mM
[U-99% 13C; U-98% 15N]
20
mM
50
mM
5
mM
0.0798
6.0
ambient
298
K
molecular dynamics
1
lowest energy
1.2 mM [U-99% 13C; U-98% 15N] protein, 20 mM sodium phosphate, 50 mM sodium chloride, 5 mM sodium azide, 95% H2O/5% D2O
95% H2O/5% D2O
refinement
DYANA
refinement
opalp
600
Bruker
Avance
Bruker Avance
800
Bruker
Avance
Bruker Avance
GLY
1
n
1
GLY
1
A
SER
2
n
2
SER
2
A
GLU
3
n
3
GLU
3
A
ASN
4
n
4
ASN
4
A
PHE
5
n
5
PHE
5
A
GLN
6
n
6
GLN
6
A
THR
7
n
7
THR
7
A
LEU
8
n
8
LEU
8
A
LEU
9
n
9
LEU
9
A
ASP
10
n
10
ASP
10
A
ALA
11
n
11
ALA
11
A
GLY
12
n
12
GLY
12
A
LEU
13
n
13
LEU
13
A
PRO
14
n
14
PRO
14
A
GLN
15
n
15
GLN
15
A
LYS
16
n
16
LYS
16
A
VAL
17
n
17
VAL
17
A
ALA
18
n
18
ALA
18
A
GLU
19
n
19
GLU
19
A
LYS
20
n
20
LYS
20
A
LEU
21
n
21
LEU
21
A
ASP
22
n
22
ASP
22
A
GLU
23
n
23
GLU
23
A
ILE
24
n
24
ILE
24
A
TYR
25
n
25
TYR
25
A
VAL
26
n
26
VAL
26
A
ALA
27
n
27
ALA
27
A
GLY
28
n
28
GLY
28
A
LEU
29
n
29
LEU
29
A
VAL
30
n
30
VAL
30
A
ALA
31
n
31
ALA
31
A
HIS
32
n
32
HIS
32
A
SER
33
n
33
SER
33
A
ASP
34
n
34
ASP
34
A
LEU
35
n
35
LEU
35
A
ASP
36
n
36
ASP
36
A
GLU
37
n
37
GLU
37
A
ARG
38
n
38
ARG
38
A
ALA
39
n
39
ALA
39
A
ILE
40
n
40
ILE
40
A
GLU
41
n
41
GLU
41
A
ALA
42
n
42
ALA
42
A
LEU
43
n
43
LEU
43
A
LYS
44
n
44
LYS
44
A
GLU
45
n
45
GLU
45
A
PHE
46
n
46
PHE
46
A
ASN
47
n
47
ASN
47
A
GLU
48
n
48
GLU
48
A
ASP
49
n
49
ASP
49
A
GLY
50
n
50
GLY
50
A
ALA
51
n
51
ALA
51
A
LEU
52
n
52
LEU
52
A
ALA
53
n
53
ALA
53
A
VAL
54
n
54
VAL
54
A
LEU
55
n
55
LEU
55
A
GLN
56
n
56
GLN
56
A
GLN
57
n
57
GLN
57
A
PHE
58
n
58
PHE
58
A
LYS
59
n
59
LYS
59
A
ASP
60
n
60
ASP
60
A
SER
61
n
61
SER
61
A
ASP
62
n
62
ASP
62
A
LEU
63
n
63
LEU
63
A
SER
64
n
64
SER
64
A
HIS
65
n
65
HIS
65
A
VAL
66
n
66
VAL
66
A
GLN
67
n
67
GLN
67
A
ASN
68
n
68
ASN
68
A
LYS
69
n
69
LYS
69
A
SER
70
n
70
SER
70
A
ALA
71
n
71
ALA
71
A
PHE
72
n
72
PHE
72
A
LEU
73
n
73
LEU
73
A
CYS
74
n
74
CYS
74
A
GLY
75
n
75
GLY
75
A
VAL
76
n
76
VAL
76
A
MET
77
n
77
MET
77
A
LYS
78
n
78
LYS
78
A
THR
79
n
79
THR
79
A
TYR
80
n
80
TYR
80
A
ARG
81
n
81
ARG
81
A
GLN
82
n
82
GLN
82
A
ARG
83
n
83
ARG
83
A
GLU
84
n
84
GLU
84
A
LYS
85
n
85
LYS
85
A
GLN
86
n
86
GLN
86
A
GLY
87
n
87
GLY
87
A
THR
88
n
88
THR
88
A
LYS
89
n
89
LYS
89
A
VAL
90
n
90
VAL
90
A
ALA
91
n
91
ALA
91
A
ASP
92
n
92
ASP
92
A
SER
93
n
93
SER
93
A
SER
94
n
94
SER
94
A
LYS
95
n
95
LYS
95
A
GLY
96
n
96
GLY
96
A
PRO
97
n
97
PRO
97
A
ASP
98
n
98
ASP
98
A
GLU
99
n
99
GLU
99
A
ALA
100
n
100
ALA
100
A
LYS
101
n
101
LYS
101
A
ILE
102
n
102
ILE
102
A
LYS
103
n
103
LYS
103
A
ALA
104
n
104
ALA
104
A
LEU
105
n
105
LEU
105
A
LEU
106
n
106
LEU
106
A
GLU
107
n
107
GLU
107
A
ARG
108
n
108
ARG
108
A
THR
109
n
109
THR
109
A
GLY
110
n
110
GLY
110
A
TYR
111
n
111
TYR
111
A
THR
112
n
112
THR
112
A
LEU
113
n
113
LEU
113
A
ASP
114
n
114
ASP
114
A
VAL
115
n
115
VAL
115
A
THR
116
n
116
THR
116
A
THR
117
n
117
THR
117
A
GLY
118
n
118
GLY
118
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
A
THR
GLY
117
118
137.00
2
A
A
GLY
LEU
12
13
-149.14
4
A
A
GLY
LEU
12
13
-143.19
6
A
A
VAL
ALA
30
31
149.72
9
A
A
GLY
SER
1
2
-146.56
9
A
A
PRO
ASP
97
98
137.05
9
A
A
LEU
ASP
113
114
-149.94
9
A
A
THR
GLY
117
118
147.65
10
A
A
THR
GLY
117
118
143.34
11
A
A
THR
LEU
112
113
149.10
12
A
A
SER
SER
93
94
141.83
13
A
A
THR
GLY
117
118
143.60
14
A
A
PRO
ASP
97
98
137.23
17
A
A
PRO
ASP
97
98
149.23
5
A
ARG
83
0.086
SIDE CHAIN
6
A
ARG
81
0.112
SIDE CHAIN
7
A
TYR
80
0.079
SIDE CHAIN
7
A
ARG
81
0.101
SIDE CHAIN
8
A
ARG
38
0.088
SIDE CHAIN
8
A
ARG
81
0.094
SIDE CHAIN
9
A
ARG
81
0.086
SIDE CHAIN
10
A
TYR
25
0.076
SIDE CHAIN
10
A
TYR
80
0.080
SIDE CHAIN
12
A
TYR
25
0.085
SIDE CHAIN
15
A
ARG
38
0.084
SIDE CHAIN
15
A
ARG
83
0.113
SIDE CHAIN
17
A
ARG
38
0.152
SIDE CHAIN
18
A
TYR
80
0.103
SIDE CHAIN
19
A
ARG
81
0.128
SIDE CHAIN
1
A
HIS
32
69.12
-41.92
1
A
HIS
65
-141.40
41.66
1
A
ASN
68
-150.89
83.28
1
A
THR
79
-128.56
-51.04
1
A
PRO
97
-62.80
-167.30
1
A
ASP
98
-58.69
-154.57
1
A
GLU
99
67.89
137.28
1
A
ALA
100
-160.59
116.08
1
A
ILE
102
-60.71
-72.55
1
A
LYS
103
53.28
-2.53
1
A
TYR
111
-58.76
109.57
2
A
GLU
3
-144.04
-46.40
2
A
VAL
30
-127.06
-167.30
2
A
ALA
31
-140.12
33.03
2
A
HIS
32
71.94
-45.15
2
A
LEU
43
-99.79
32.38
2
A
ASP
62
-78.42
44.15
2
A
LYS
85
70.09
-61.53
2
A
VAL
90
-111.03
55.72
2
A
ALA
91
-146.00
-3.12
2
A
SER
94
-165.58
119.58
2
A
ALA
100
-148.43
-30.12
2
A
ASP
114
-169.52
115.82
3
A
HIS
32
67.05
-80.38
3
A
SER
33
-82.57
34.83
3
A
LEU
43
-73.35
22.61
3
A
GLU
45
-118.15
77.15
3
A
ASP
60
-90.39
59.49
3
A
LEU
63
-77.51
33.05
3
A
SER
94
-164.78
117.94
3
A
ILE
102
-137.91
-41.40
3
A
LEU
113
-65.05
24.32
4
A
HIS
32
60.93
-85.64
4
A
LEU
43
-78.46
36.09
4
A
LYS
44
-125.87
-65.64
4
A
ASP
60
-144.60
43.65
4
A
HIS
65
-152.91
55.99
4
A
THR
88
-62.53
-174.38
4
A
VAL
90
-161.63
114.71
4
A
SER
93
-80.44
39.57
4
A
ASP
98
-164.81
76.71
4
A
ALA
100
-160.43
-60.24
4
A
ALA
104
-74.21
-154.57
4
A
ARG
108
-152.92
-7.19
4
A
THR
112
-118.88
-164.95
4
A
LEU
113
-71.36
-165.35
4
A
THR
116
-66.39
42.00
5
A
LEU
43
-70.87
38.48
5
A
GLU
45
-110.64
61.43
5
A
ASP
60
-107.56
41.39
5
A
THR
79
-96.32
-71.22
5
A
LYS
85
61.86
-172.61
5
A
SER
93
173.99
130.94
5
A
SER
94
173.72
104.97
5
A
ASP
98
-158.57
35.98
5
A
ALA
100
-161.78
105.47
5
A
ARG
108
-156.71
80.50
5
A
THR
112
-166.66
9.16
5
A
THR
116
-145.80
35.56
6
A
GLN
67
-98.45
-85.64
6
A
GLU
84
-96.71
-65.37
6
A
LYS
89
-159.76
88.83
6
A
VAL
90
-145.60
49.29
6
A
SER
94
176.16
125.10
6
A
ASP
98
-176.40
85.14
6
A
ALA
100
-151.77
67.65
6
A
ILE
102
-147.01
-16.34
6
A
ALA
104
-81.24
-157.32
6
A
ASP
114
-153.41
-4.63
6
A
THR
116
-63.50
90.64
7
A
GLU
3
174.95
-51.56
7
A
ALA
31
-92.96
31.71
7
A
HIS
32
67.48
-38.12
7
A
ASP
60
-95.26
56.81
7
A
ARG
81
-56.38
-6.65
7
A
LYS
85
60.04
-47.39
7
A
VAL
90
-140.39
52.58
7
A
ALA
91
-68.16
5.76
7
A
SER
94
179.53
-1.31
7
A
ASP
98
-152.72
84.63
7
A
GLU
99
-149.61
23.80
7
A
ALA
100
-148.06
13.93
7
A
ILE
102
-79.23
-73.22
7
A
LYS
103
63.90
-32.35
7
A
ALA
104
-145.13
-155.41
7
A
LEU
105
62.16
101.39
8
A
LEU
21
-141.13
-34.28
8
A
HIS
32
56.54
-85.39
8
A
ASP
34
-128.46
-58.32
8
A
PHE
46
-65.74
-177.17
8
A
LEU
63
-97.37
53.83
8
A
HIS
65
-147.67
39.65
8
A
GLU
84
-50.56
-75.86
8
A
GLN
86
-107.89
71.85
8
A
SER
93
-159.40
65.39
8
A
SER
94
-117.60
74.50
8
A
ASP
98
-143.34
18.26
8
A
ALA
100
-147.00
-6.87
8
A
ILE
102
-150.60
-39.17
8
A
ALA
104
-73.90
29.62
8
A
ARG
108
-159.81
56.46
8
A
THR
116
-144.89
21.37
9
A
GLU
3
-78.79
-85.27
9
A
ASN
4
49.25
-41.22
9
A
HIS
32
61.87
-42.74
9
A
GLN
67
-101.90
-76.91
9
A
GLN
86
-56.17
109.88
9
A
ASP
92
-156.35
-5.26
9
A
SER
94
-163.00
102.72
9
A
LYS
103
63.01
-59.69
9
A
ARG
108
-165.83
9.92
10
A
HIS
32
69.01
-74.20
10
A
PHE
46
-112.61
-168.11
10
A
LEU
63
-115.67
63.25
10
A
THR
79
-128.75
-52.71
10
A
GLU
84
-67.68
7.11
10
A
ALA
91
-75.33
36.23
10
A
SER
94
-156.45
69.79
10
A
ALA
100
45.66
71.72
11
A
SER
33
-142.49
29.38
11
A
ALA
91
-145.59
48.22
11
A
SER
93
-69.72
91.93
11
A
SER
94
-166.30
105.30
11
A
ALA
104
-79.33
48.93
11
A
ASP
114
-59.81
3.90
11
A
THR
116
-58.80
87.50
11
A
THR
117
-96.71
38.24
12
A
SER
2
174.87
171.10
12
A
LEU
21
-133.80
-36.54
12
A
HIS
32
47.41
-86.22
12
A
LEU
43
-69.64
23.46
12
A
LYS
85
72.80
-14.51
12
A
VAL
90
-103.26
73.51
12
A
ALA
91
-156.84
85.66
12
A
SER
93
-176.22
149.61
12
A
SER
94
174.58
112.03
12
A
ASP
98
-176.80
118.62
12
A
GLU
99
-141.01
35.98
12
A
LYS
101
-65.63
81.23
12
A
ILE
102
-148.79
-32.37
12
A
ALA
104
-70.02
35.61
12
A
ARG
108
-157.13
22.51
12
A
THR
112
-152.00
86.88
13
A
ALA
31
-99.28
32.14
13
A
HIS
32
60.76
-81.55
13
A
SER
33
-77.37
32.97
13
A
LEU
43
-73.02
39.75
13
A
LYS
44
-130.25
-31.55
13
A
ASP
60
-102.24
41.74
13
A
ARG
81
-59.45
18.28
13
A
GLN
82
-126.12
-50.45
13
A
GLU
84
-72.10
-84.11
13
A
ALA
91
-154.48
66.23
13
A
SER
94
-162.00
113.68
13
A
ILE
102
-127.79
-73.59
13
A
LYS
103
60.01
-44.14
13
A
LEU
105
-162.64
105.29
13
A
LEU
106
-160.93
76.64
13
A
ARG
108
-164.36
-166.90
14
A
HIS
32
75.06
-57.07
14
A
GLU
37
68.28
-82.70
14
A
ASP
60
-93.84
49.13
14
A
GLN
67
-76.25
-81.26
14
A
SER
93
-168.79
102.99
14
A
SER
94
-157.06
79.73
14
A
GLU
99
48.35
105.33
14
A
ALA
104
-69.88
92.62
14
A
THR
112
-162.87
105.33
14
A
THR
116
-62.89
86.31
15
A
HIS
32
61.67
-85.12
15
A
ASP
34
-148.39
16.56
15
A
ASN
47
-74.81
-166.02
15
A
ASP
60
-102.34
40.26
15
A
HIS
65
-149.37
24.91
15
A
LYS
78
-77.43
21.53
15
A
THR
79
-132.33
-61.07
15
A
LYS
85
-156.09
84.64
15
A
GLN
86
-56.88
85.82
15
A
LYS
103
44.48
-77.21
15
A
ARG
108
-165.05
53.19
15
A
VAL
115
-67.64
40.94
16
A
HIS
32
59.72
-79.36
16
A
SER
33
-74.74
34.48
16
A
SER
64
-92.53
-60.96
16
A
ASN
68
-101.17
78.41
16
A
SER
94
-162.62
105.86
16
A
GLU
99
-147.29
-18.10
16
A
ILE
102
-123.19
-85.85
16
A
LYS
103
63.87
-28.49
16
A
THR
112
174.79
162.42
16
A
ASP
114
-72.87
22.52
16
A
THR
116
-63.23
88.70
17
A
HIS
32
75.09
-67.82
17
A
SER
33
-75.26
37.49
17
A
LEU
43
-90.38
40.40
17
A
LYS
44
-129.54
-52.19
17
A
VAL
54
-121.78
-55.56
17
A
HIS
65
46.94
24.96
17
A
SER
94
-155.87
77.85
17
A
ALA
100
-152.02
71.09
17
A
LYS
101
-59.58
179.60
17
A
LYS
103
62.64
-57.03
17
A
ARG
108
173.96
38.17
17
A
THR
112
-155.46
19.27
17
A
THR
116
-142.53
19.68
18
A
ALA
27
-69.75
8.29
18
A
SER
33
-72.75
23.21
18
A
ASN
47
-78.87
-164.74
18
A
ASP
60
-115.23
61.96
18
A
GLU
84
-92.53
-81.14
18
A
SER
93
175.61
144.62
18
A
SER
94
174.55
126.29
18
A
ALA
100
-135.70
-60.51
18
A
ILE
102
-136.03
-53.34
18
A
LEU
105
-164.45
100.30
18
A
ARG
108
-178.69
50.42
19
A
ALA
31
-97.67
45.39
19
A
HIS
32
62.67
-35.02
19
A
ASP
34
-69.27
1.10
19
A
LEU
43
-77.43
21.69
19
A
GLN
56
-65.76
-70.21
19
A
ASP
60
-112.53
52.63
19
A
GLN
86
-50.69
101.15
19
A
LYS
89
-64.64
26.28
19
A
SER
94
-160.81
75.23
19
A
LYS
103
64.50
-56.19
19
A
ALA
104
-95.54
-154.45
19
A
LEU
105
58.97
77.87
19
A
ARG
108
-143.24
-7.03
Heterogeneous nuclear ribonucleoprotein Q
lowest energy, model1
NMR structure of the Acidic domain of SYNCRIP (24-140)
1
N
N
A
ASN
4
A
ASN
4
HELX_P
A
GLY
12
A
GLY
12
1
1
9
A
PRO
14
A
PRO
14
HELX_P
A
GLU
19
A
GLU
19
1
2
6
A
GLU
23
A
GLU
23
HELX_P
A
GLY
28
A
GLY
28
1
3
6
A
ASP
36
A
ASP
36
HELX_P
A
ALA
42
A
ALA
42
1
4
7
A
ASN
47
A
ASN
47
HELX_P
A
LYS
59
A
LYS
59
1
5
13
A
ASN
68
A
ASN
68
HELX_P
A
MET
77
A
MET
77
1
6
10
A
LYS
78
A
LYS
78
HELX_P
A
GLU
84
A
GLU
84
5
7
7
Structural Genomics, Unknown Function
Acidic domain, SYNCRIP, Structural Genomics, Unknown Function, PSI-Biology, Joint Center for Structural Genomics, JCSG, Partnership for T-Cell Biology, TCELL
HNRPQ_HUMAN
UNP
1
24
O60506
SENFQTLLDAGLPQKVAEKLDEIYVAGLVAHSDLDERAIEALKEFNEDGALAVLQQFKDSDLSHVQNKSAFLCGVMKTYR
QREKQGTKVADSSKGPDEAKIKALLERTGYTLDVTTG
24
140
2NBB
2
118
O60506
A
1
2
118
1
EXPRESSION TAG
GLY
1
2NBB
A
O60506
UNP
1
1
P 1